Wall clock time and date at job start Tue Mar 31 2020 07:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 C 1.52995 * 109.47240 * 240.00076 * 2 1 3 5 5 C 1.53007 * 109.47093 * 174.99783 * 4 2 1 6 6 C 1.50699 * 109.46651 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00270 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00014 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99666 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00532 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46651 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47280 * 119.99795 * 10 8 6 13 13 H 1.48496 * 109.47148 * 240.00119 * 10 8 6 14 14 N 1.46905 * 109.47191 * 119.99949 * 2 1 3 15 15 C 1.46902 * 110.99800 * 274.99934 * 14 2 1 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 2 17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47000 * 180.02562 * 17 16 15 19 19 N 1.46500 * 109.47373 * 180.02562 * 18 17 16 20 20 C 1.34517 * 125.20447 * 269.69639 * 19 18 17 21 21 O 1.21398 * 125.79408 * 359.97438 * 20 19 18 22 22 C 1.47967 * 108.40946 * 179.85231 * 20 19 18 23 23 C 1.34318 * 106.79467 * 0.40572 * 22 20 19 24 24 C 1.34522 * 125.20582 * 89.99778 * 19 18 17 25 25 O 1.21403 * 125.79123 * 359.97438 * 24 19 18 26 26 H 1.09002 * 109.46808 * 299.99830 * 1 2 3 27 27 H 1.09001 * 109.47129 * 59.99933 * 1 2 3 28 28 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47077 * 294.99883 * 4 2 1 30 30 H 1.09003 * 109.46883 * 55.00222 * 4 2 1 31 31 H 1.08993 * 109.47402 * 299.99690 * 5 4 2 32 32 H 1.08993 * 109.46938 * 60.00418 * 5 4 2 33 33 H 0.97007 * 120.00253 * 179.97438 * 9 8 6 34 34 H 1.00898 * 110.99743 * 151.04984 * 14 2 1 35 35 H 1.09000 * 109.47263 * 60.00269 * 15 14 2 36 36 H 1.09001 * 109.47582 * 299.99548 * 15 14 2 37 37 H 1.08993 * 109.46955 * 300.00347 * 16 15 14 38 38 H 1.09000 * 109.47050 * 60.00176 * 16 15 14 39 39 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 40 40 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 41 41 H 1.09004 * 109.47107 * 300.00294 * 18 17 16 42 42 H 1.09000 * 109.46866 * 60.00185 * 18 17 16 43 43 H 1.08003 * 126.60243 * 180.13746 * 22 20 19 44 44 H 1.08000 * 126.60465 * 179.79405 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 6 4.0671 -1.3230 -2.5445 7 1 3.3686 -1.8028 -3.2140 8 6 5.4184 -1.3600 -2.8159 9 7 6.2690 -0.7762 -2.0003 10 14 6.0411 -2.2405 -4.3411 11 1 4.8910 -2.8110 -5.0874 12 1 6.7644 -1.2764 -5.2087 13 1 6.9628 -3.3335 -3.9400 14 7 2.0197 -0.6925 1.1995 15 6 2.0825 0.2226 2.3469 16 6 2.5951 -0.5332 3.5745 17 6 2.6611 0.4201 4.7694 18 6 3.1743 -0.3355 5.9969 19 7 3.2370 0.5770 7.1412 20 6 4.3044 1.3212 7.4821 21 8 5.3678 1.3473 6.8970 22 6 3.9615 2.1047 8.6895 23 6 2.6999 1.7804 9.0173 24 6 2.2378 0.7947 8.0152 25 8 1.1426 0.2716 7.9862 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7517 -1.7715 -1.2055 30 1 1.6054 -0.2616 -2.1369 31 1 3.8533 0.4370 -1.3574 32 1 3.9995 -1.0727 -0.4260 33 1 7.2198 -0.8024 -2.1910 34 1 2.9174 -1.1204 1.0287 35 1 1.0871 0.6163 2.5526 36 1 2.7589 1.0462 2.1183 37 1 1.9184 -1.3565 3.8029 38 1 3.5904 -0.9273 3.3691 39 1 3.3380 1.2431 4.5407 40 1 1.6660 0.8145 4.9749 41 1 2.4977 -1.1589 6.2258 42 1 4.1695 -0.7296 5.7911 43 1 4.6036 2.8000 9.2099 44 1 2.1320 2.1653 9.8514 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172494284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:14 Heat of formation + Delta-G solvation = -71.486773 kcal Electronic energy + Delta-G solvation = -22705.235706 eV Core-core repulsion = 19236.242457 eV Total energy + Delta-G solvation = -3468.993249 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.23861 -39.76710 -38.91529 -37.38104 -36.65674 -35.26433 -34.03897 -32.13364 -30.74243 -28.20606 -27.00704 -26.35189 -24.42496 -23.17209 -22.57150 -22.30270 -21.00009 -20.92081 -18.59499 -18.47144 -17.62614 -17.34028 -16.95562 -16.56469 -16.47859 -16.27931 -15.88139 -15.17184 -15.01235 -14.91848 -14.77157 -14.53074 -14.44774 -14.20365 -13.79835 -13.30306 -13.19619 -13.14219 -12.87842 -12.69506 -12.51271 -12.32377 -12.22795 -11.99116 -11.81375 -11.72611 -11.52776 -11.34438 -11.32107 -11.18792 -10.97294 -10.79080 -10.57583 -9.36796 -8.22300 -6.33098 -0.92329 1.31994 1.38062 1.38361 1.51845 1.61341 1.71212 2.39135 2.90610 3.10319 3.14887 3.22068 3.74116 3.79292 4.01905 4.08143 4.17419 4.26655 4.32205 4.35301 4.45044 4.46841 4.56677 4.61088 4.65111 4.75158 4.76687 4.85623 4.89664 4.97938 5.01273 5.04958 5.15281 5.20819 5.26880 5.42580 5.51550 5.60338 5.67889 5.81874 6.11198 6.19899 6.23852 6.41289 6.51264 6.83645 7.36222 8.89295 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002522 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.939289 B =11100.497150 C =12261.358581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.085 3.915 3 H 0.025 0.975 4 C -0.102 4.102 5 C 0.027 3.973 6 C -0.542 4.542 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.965 3.035 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.278 1.278 14 N -0.689 5.689 15 C 0.062 3.938 16 C -0.105 4.105 17 C -0.120 4.120 18 C 0.112 3.888 19 N -0.598 5.598 20 C 0.528 3.472 21 O -0.496 6.496 22 C -0.125 4.125 23 C -0.120 4.120 24 C 0.532 3.468 25 O -0.490 6.490 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.057 0.943 31 H -0.018 1.018 32 H -0.001 1.001 33 H 0.263 0.737 34 H 0.338 0.662 35 H 0.079 0.921 36 H 0.013 0.987 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.220 0.780 44 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.875 6.431 24.944 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.025 4.025 3 H 0.043 0.957 4 C -0.140 4.140 5 C -0.010 4.010 6 C -0.579 4.579 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.203 1.203 14 N -0.322 5.322 15 C -0.068 4.068 16 C -0.144 4.144 17 C -0.159 4.159 18 C -0.008 4.008 19 N -0.340 5.340 20 C 0.319 3.681 21 O -0.369 6.369 22 C -0.146 4.146 23 C -0.141 4.141 24 C 0.323 3.677 25 O -0.363 6.363 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.000 1.000 32 H 0.017 0.983 33 H 0.072 0.928 34 H 0.157 0.843 35 H 0.097 0.903 36 H 0.031 0.969 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.237 0.763 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.351 5.878 24.720 27.075 hybrid contribution 1.632 0.081 -1.379 2.139 sum -7.718 5.959 23.341 25.296 Atomic orbital electron populations 1.21705 0.93041 1.02226 1.01515 1.21556 0.96538 0.94848 0.89546 0.95702 1.21657 0.96134 0.99927 0.96296 1.19006 0.92163 0.94355 0.95513 1.21716 0.92549 1.34486 1.09197 0.92292 1.25979 0.97377 0.96366 1.00130 1.70101 1.02726 1.45456 1.38989 0.85405 0.78421 0.78257 0.79008 1.18603 1.20437 1.20322 1.60717 1.33640 1.32990 1.04839 1.21979 1.00437 0.93617 0.90739 1.21367 1.01735 0.98510 0.92779 1.21737 1.01741 0.98654 0.93800 1.21748 1.04140 0.91716 0.83245 1.46966 1.16323 1.42279 1.28444 1.20318 0.82365 0.79315 0.86066 1.90825 1.25101 1.63279 1.57662 1.24853 0.97783 0.98756 0.93161 1.24877 0.96271 0.94146 0.98807 1.20214 0.83049 0.82107 0.82304 1.90803 1.21271 1.50766 1.73415 0.92295 0.91872 0.92212 0.92487 0.92397 0.99998 0.98298 0.92838 0.84252 0.90287 0.96915 0.89944 0.92392 0.92517 0.90985 0.87870 0.88956 0.76289 0.75992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 9.42 71.98 0.68 -2.93 16 2 C 0.08 3.01 2.65 44.91 0.12 3.13 16 3 H 0.02 0.94 7.80 -2.38 -0.02 0.92 16 4 C -0.10 -4.32 4.74 30.60 0.15 -4.18 16 5 C 0.03 1.43 4.80 29.85 0.14 1.57 16 6 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 7 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 8 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 9 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 10 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 N -0.69 -23.67 6.31 -491.54 -3.10 -26.77 16 15 C 0.06 1.79 5.48 86.31 0.47 2.26 16 16 C -0.11 -2.59 5.48 30.60 0.17 -2.42 16 17 C -0.12 -2.59 5.54 30.60 0.17 -2.42 16 18 C 0.11 2.20 5.82 86.38 0.50 2.70 16 19 N -0.60 -10.87 2.64 -762.70 -2.02 -12.89 16 20 C 0.53 9.34 8.04 86.86 0.70 10.03 16 21 O -0.50 -12.89 17.74 -3.39 -0.06 -12.95 16 22 C -0.12 -0.79 11.15 23.96 0.27 -0.52 16 23 C -0.12 -0.67 11.15 23.95 0.27 -0.40 16 24 C 0.53 8.52 8.04 86.86 0.70 9.22 16 25 O -0.49 -11.05 17.74 -3.41 -0.06 -11.11 16 26 H 0.06 1.49 7.45 -2.39 -0.02 1.48 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 31 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 32 H 0.00 -0.07 6.43 -2.39 -0.02 -0.08 16 33 H 0.26 15.21 8.31 -92.70 -0.77 14.43 16 34 H 0.34 13.21 6.47 -89.70 -0.58 12.63 16 35 H 0.08 2.07 7.44 -2.39 -0.02 2.06 16 36 H 0.01 0.40 8.06 -2.39 -0.02 0.38 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 41 H 0.10 1.87 8.01 -2.38 -0.02 1.85 16 42 H 0.09 1.89 8.01 -2.39 -0.02 1.87 16 43 H 0.22 -0.27 8.06 -2.91 -0.02 -0.29 16 44 H 0.22 -0.57 8.06 -2.91 -0.02 -0.60 16 Total: -1.00 -74.77 370.57 2.50 -72.28 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.40 Total: 16.25 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 5.02 Total: -14.66 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -4.83 Total: -96.85 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.12 Total: -24.05 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -74.77 2.50 -72.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.790 kcal (2) G-P(sol) polarization free energy of solvation -74.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds