Wall clock time and date at job start Tue Mar 31 2020 07:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99829 * 2 1 4 4 C 1.50707 * 109.46902 * 179.97438 * 3 2 1 5 5 N 1.30768 * 127.01331 * 270.00178 * 4 3 2 6 6 O 1.21556 * 111.70147 * 179.97438 * 5 4 3 7 7 C 1.32888 * 111.23210 * 359.89165 * 6 5 4 8 8 C 1.35749 * 106.52536 * 0.19240 * 7 6 5 9 9 C 1.50036 * 124.14962 * 179.76980 * 8 7 6 10 10 N 1.47481 * 108.12678 * 344.07518 * 9 8 7 11 11 C 1.46897 * 111.00030 * 286.29380 * 10 9 8 12 12 H 1.08997 * 109.46901 * 37.41345 * 11 10 9 13 13 C 1.52995 * 109.47240 * 157.41406 * 11 10 9 14 14 C 1.52995 * 109.47287 * 277.41512 * 11 10 9 15 15 C 1.53000 * 109.47346 * 60.98439 * 14 11 10 16 16 C 1.50701 * 109.47219 * 173.90656 * 15 14 11 17 17 H 1.07995 * 120.00095 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99851 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00011 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99952 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46925 * 59.99865 * 20 18 16 22 22 H 1.48496 * 109.47144 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46747 * 299.99853 * 20 18 16 24 24 C 1.46940 * 111.50312 * 50.61885 * 10 9 8 25 25 C 1.50432 * 130.66338 * 180.35175 * 7 6 5 26 26 H 1.09008 * 109.47014 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47557 * 300.00018 * 1 2 3 28 28 H 1.08998 * 109.46942 * 60.00639 * 1 2 3 29 29 H 1.09000 * 109.46643 * 59.99914 * 3 2 1 30 30 H 1.08992 * 109.46896 * 299.99358 * 3 2 1 31 31 H 1.09007 * 109.72985 * 224.41707 * 9 8 7 32 32 H 1.09000 * 109.77167 * 103.75992 * 9 8 7 33 33 H 1.08996 * 109.47255 * 69.29583 * 13 11 10 34 34 H 1.08997 * 109.47757 * 189.30119 * 13 11 10 35 35 H 1.09008 * 109.47206 * 309.30006 * 13 11 10 36 36 H 1.09003 * 109.47627 * 180.98688 * 14 11 10 37 37 H 1.09007 * 109.47062 * 300.98502 * 14 11 10 38 38 H 1.08999 * 109.47035 * 293.90398 * 15 14 11 39 39 H 1.08996 * 109.46967 * 53.90689 * 15 14 11 40 40 H 0.97002 * 119.99785 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.40101 * 48.96848 * 24 10 9 42 42 H 1.08995 * 109.39878 * 168.80683 * 24 10 9 43 43 H 1.09001 * 109.70078 * 44.32495 * 25 7 6 44 44 H 1.08995 * 109.80619 * 283.51314 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2969 1.1245 1.0451 6 8 5.4657 1.0314 0.7246 7 6 5.6027 1.0176 -0.5971 8 6 4.3524 1.1197 -1.1159 9 6 4.0499 1.1469 -2.5852 10 7 5.3040 1.4326 -3.3067 11 6 5.6900 2.8417 -3.1539 12 1 5.4515 3.1763 -2.1443 13 6 7.1932 2.9882 -3.3981 14 6 4.9233 3.6933 -4.1677 15 6 3.4209 3.5662 -3.9080 16 6 2.6735 4.5178 -4.8064 17 1 3.2159 5.1496 -5.4942 18 6 1.2974 4.5816 -4.7504 19 7 0.6369 3.8118 -3.9132 20 14 0.3710 5.7617 -5.8635 21 1 0.6573 5.4313 -7.2827 22 1 -1.0872 5.6382 -5.6115 23 1 0.8065 7.1530 -5.5815 24 6 6.3887 0.5398 -2.8759 25 6 6.8346 0.9113 -1.4539 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.3182 1.9269 -2.7959 32 1 3.6571 0.1797 -2.8987 33 1 7.4090 2.8125 -4.4519 34 1 7.5093 3.9950 -3.1254 35 1 7.7325 2.2611 -2.7908 36 1 5.2226 4.7365 -4.0662 37 1 5.1482 3.3474 -5.1767 38 1 3.1016 2.5448 -4.1149 39 1 3.2104 3.8089 -2.8665 40 1 -0.3312 3.8570 -3.8736 41 1 6.0349 -0.4911 -2.8868 42 1 7.2328 0.6403 -3.5580 43 1 7.4913 0.1363 -1.0586 44 1 7.3577 1.8674 -1.4688 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172496057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:34 Heat of formation + Delta-G solvation = 20.280529 kcal Electronic energy + Delta-G solvation = -25235.385304 eV Core-core repulsion = 21770.371384 eV Total energy + Delta-G solvation = -3465.013920 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.13007 -40.76312 -39.04802 -36.08717 -35.47134 -34.33201 -32.43843 -32.12300 -30.23915 -29.34695 -26.90950 -26.81892 -26.29443 -24.59073 -23.43863 -22.30886 -21.61400 -19.92672 -18.89274 -18.68255 -18.16167 -17.39338 -16.99359 -16.75833 -16.58373 -16.51262 -16.09777 -15.80871 -14.76353 -14.57832 -14.38496 -14.11132 -13.98263 -13.88247 -13.57051 -13.42453 -13.13596 -12.88612 -12.83972 -12.66447 -12.60440 -12.42160 -12.26220 -12.23560 -11.95834 -11.75635 -11.53532 -11.25747 -10.96607 -10.86470 -10.70758 -10.45024 -9.94325 -9.28254 -8.14035 -6.22533 0.32637 0.95319 1.40697 1.42385 1.49769 1.95004 2.43540 2.62777 2.92413 3.18707 3.25888 3.49804 3.81190 3.90822 3.98319 4.10359 4.14958 4.18364 4.24575 4.40360 4.45840 4.47074 4.52050 4.56244 4.62165 4.72280 4.75325 4.77624 4.83570 4.87876 5.00922 5.09305 5.11386 5.16305 5.22059 5.39659 5.46573 5.59327 5.83975 5.92466 5.94307 6.15040 6.28973 6.37210 6.92749 7.09934 7.44808 8.95994 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.006294 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.887709 B = 4447.578537 C = 6350.506076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.146 3.854 4 C 0.018 3.982 5 N -0.382 5.382 6 O 0.113 5.887 7 C -0.029 4.029 8 C -0.229 4.229 9 C 0.106 3.894 10 N -0.525 5.525 11 C 0.084 3.916 12 H 0.020 0.980 13 C -0.163 4.163 14 C -0.093 4.093 15 C 0.029 3.971 16 C -0.544 4.544 17 H 0.053 0.947 18 C 0.007 3.993 19 N -0.924 5.924 20 Si 0.954 3.046 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.051 3.949 25 C -0.079 4.079 26 H 0.110 0.890 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.020 0.980 39 H -0.022 1.022 40 H 0.261 0.739 41 H 0.082 0.918 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.191 -7.697 5.207 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C 0.069 3.931 4 C -0.139 4.139 5 N -0.088 5.088 6 O 0.047 5.953 7 C -0.095 4.095 8 C -0.235 4.235 9 C -0.023 4.023 10 N -0.246 5.246 11 C -0.024 4.024 12 H 0.038 0.962 13 C -0.219 4.219 14 C -0.131 4.131 15 C -0.007 4.007 16 C -0.582 4.582 17 H 0.071 0.929 18 C -0.192 4.192 19 N -0.564 5.564 20 Si 0.779 3.221 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.077 4.077 25 C -0.117 4.117 26 H 0.128 0.872 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.038 0.962 39 H -0.004 1.004 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.798 -7.968 6.055 14.722 hybrid contribution -1.552 1.132 -0.136 1.926 sum 9.245 -6.836 5.919 12.933 Atomic orbital electron populations 1.22991 0.78443 1.04429 1.01024 1.87833 1.22233 1.26612 1.95661 1.20425 0.84839 0.85731 1.02087 1.22815 0.97793 1.03799 0.89453 1.74220 0.89676 1.20982 1.23914 1.84600 1.21364 1.66305 1.23017 1.24662 0.99453 1.02178 0.83211 1.21743 0.93131 1.09034 0.99632 1.21198 0.94668 1.03419 0.82969 1.62284 1.03095 1.04413 1.54843 1.21662 0.96707 0.87485 0.96523 0.96175 1.22441 0.92419 1.03331 1.03748 1.21527 0.95642 0.97457 0.98459 1.19172 0.92142 0.95842 0.93578 1.21732 0.92302 1.22436 1.21692 0.92886 1.25808 0.98802 0.97506 0.97042 1.70051 1.07695 1.40513 1.38134 0.85680 0.77318 0.79504 0.79598 1.19412 1.20945 1.19727 1.22626 0.95529 0.97063 0.92473 1.21627 0.90634 1.06722 0.92762 0.87197 0.92534 0.93843 0.90948 0.91390 0.87942 0.89949 0.91106 0.91796 0.88335 0.93440 0.92526 0.96203 1.00410 0.93044 0.89928 0.85494 0.85192 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -14.18 10.69 -148.98 -1.59 -15.77 16 3 C 0.15 5.35 6.52 71.24 0.46 5.81 16 4 C 0.02 0.68 6.95 43.12 0.30 0.98 16 5 N -0.38 -13.98 12.11 -48.62 -0.59 -14.57 16 6 O 0.11 3.62 11.19 81.11 0.91 4.52 16 7 C -0.03 -0.86 6.93 25.02 0.17 -0.68 16 8 C -0.23 -8.09 5.36 -20.25 -0.11 -8.20 16 9 C 0.11 3.89 5.44 85.24 0.46 4.36 16 10 N -0.52 -16.10 4.73 -873.93 -4.14 -20.24 16 11 C 0.08 2.67 1.76 44.91 0.08 2.75 16 12 H 0.02 0.73 6.73 -2.39 -0.02 0.71 16 13 C -0.16 -3.48 7.84 71.98 0.56 -2.91 16 14 C -0.09 -3.74 4.85 30.59 0.15 -3.59 16 15 C 0.03 1.49 3.30 29.85 0.10 1.59 16 16 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 17 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 18 C 0.01 0.37 5.46 84.66 0.46 0.84 16 19 N -0.92 -54.40 13.29 21.45 0.28 -54.12 16 20 Si 0.95 44.10 29.54 68.60 2.03 46.12 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 C 0.05 1.04 5.28 86.49 0.46 1.50 16 25 C -0.08 -1.46 5.39 29.96 0.16 -1.30 16 26 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.10 4.67 3.66 -2.38 -0.01 4.66 16 32 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.07 1.45 8.12 -2.39 -0.02 1.44 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.49 3.66 -2.38 -0.01 1.48 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 37 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.02 1.08 5.77 -2.39 -0.01 1.07 16 39 H -0.02 -1.27 7.70 -2.39 -0.02 -1.28 16 40 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 42 H 0.13 1.86 6.76 -2.39 -0.02 1.84 16 43 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.12 1.98 5.18 -2.39 -0.01 1.96 16 Total: -1.00 -68.96 341.19 2.65 -66.31 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 1.00 Total: 15.07 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 4.74 Total: -27.33 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -4.44 Total: -88.93 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.68 Total: -11.24 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -68.96 2.65 -66.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.590 kcal (2) G-P(sol) polarization free energy of solvation -68.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds