Wall clock time and date at job start Tue Mar 31 2020 07:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47104 * 120.00098 * 2 1 3 5 5 C 1.53005 * 109.47138 * 182.13971 * 4 2 1 6 6 C 1.50698 * 109.47138 * 184.76122 * 5 4 2 7 7 H 1.08001 * 120.00003 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99867 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00270 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99781 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47153 * 90.00486 * 10 8 6 12 12 H 1.48501 * 109.47026 * 209.99996 * 10 8 6 13 13 H 1.48498 * 109.47507 * 329.99922 * 10 8 6 14 14 N 1.46902 * 109.46964 * 239.99870 * 2 1 3 15 15 C 1.46960 * 110.99953 * 71.25911 * 14 2 1 16 16 C 1.53039 * 109.36437 * 176.81139 * 15 14 2 17 17 N 1.46961 * 109.36743 * 58.39887 * 16 15 14 18 18 C 1.46904 * 111.00003 * 176.80936 * 17 16 15 19 19 C 1.52999 * 109.46898 * 46.83819 * 18 17 16 20 20 F 1.39896 * 109.47253 * 53.49455 * 19 18 17 21 21 F 1.39903 * 109.46814 * 173.49318 * 19 18 17 22 22 F 1.39893 * 109.47105 * 293.49133 * 19 18 17 23 23 C 1.46951 * 110.87929 * 300.68125 * 17 16 15 24 24 C 1.46957 * 110.99834 * 307.45935 * 14 2 1 25 25 H 1.09003 * 109.46888 * 299.99498 * 1 2 3 26 26 H 1.08995 * 109.47023 * 59.99689 * 1 2 3 27 27 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47272 * 302.13372 * 4 2 1 29 29 H 1.09001 * 109.47704 * 62.14028 * 4 2 1 30 30 H 1.08997 * 109.47096 * 304.76048 * 5 4 2 31 31 H 1.09004 * 109.46957 * 64.75845 * 5 4 2 32 32 H 0.96998 * 120.00359 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.48885 * 296.77781 * 15 14 2 34 34 H 1.08997 * 109.48811 * 56.84230 * 15 14 2 35 35 H 1.09004 * 109.49167 * 298.43167 * 16 15 14 36 36 H 1.09001 * 109.49285 * 178.36586 * 16 15 14 37 37 H 1.09000 * 109.46949 * 166.83675 * 18 17 16 38 38 H 1.08996 * 109.47356 * 286.83804 * 18 17 16 39 39 H 1.08996 * 109.49035 * 299.35034 * 23 17 16 40 40 H 1.09004 * 109.49037 * 179.28546 * 23 17 16 41 41 H 1.09000 * 109.48832 * 303.14969 * 24 14 2 42 42 H 1.09001 * 109.49138 * 63.20242 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5691 -0.6748 1.2764 6 6 4.0756 -1.4840 2.4425 7 1 3.3768 -1.9814 3.0987 8 6 5.4312 -1.5895 2.6714 9 7 5.8732 -2.2961 3.6887 10 14 6.6398 -0.7298 1.5358 11 1 6.9118 0.6379 2.0464 12 1 7.9078 -1.5012 1.4872 13 1 6.0608 -0.6427 0.1711 14 7 2.0197 -0.6925 -1.1994 15 6 1.7796 0.1109 -2.4063 16 6 2.3735 -0.6071 -3.6204 17 7 1.7624 -1.9377 -3.7467 18 6 2.2520 -2.6301 -4.9462 19 6 3.7753 -2.5071 -5.0200 20 9 4.3377 -2.9510 -3.8185 21 9 4.2556 -3.2884 -6.0765 22 9 4.1253 -1.1694 -5.2326 23 6 2.0025 -2.7410 -2.5399 24 6 1.4085 -2.0230 -1.3257 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6458 -0.2300 2.1388 29 1 1.7084 -1.7594 1.2303 30 1 3.9618 -1.0899 0.3482 31 1 3.8994 0.3588 1.3806 32 1 6.8269 -2.3700 3.8500 33 1 0.7068 0.2406 -2.5494 34 1 2.2524 1.0865 -2.2937 35 1 3.4505 -0.7126 -3.4896 36 1 2.1713 -0.0271 -4.5208 37 1 1.9745 -3.6830 -4.8966 38 1 1.8077 -2.1787 -5.8332 39 1 3.0752 -2.8707 -2.3968 40 1 1.5297 -3.7167 -2.6525 41 1 1.6108 -2.6031 -0.4253 42 1 0.3315 -1.9176 -1.4562 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172501390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:45 Heat of formation + Delta-G solvation = -138.194684 kcal Electronic energy + Delta-G solvation = -25755.220932 eV Core-core repulsion = 21741.478271 eV Total energy + Delta-G solvation = -4013.742662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.35026 -47.82262 -47.76760 -39.61848 -36.85950 -33.48213 -32.04008 -30.94967 -29.99845 -28.65470 -25.68794 -25.03791 -23.68799 -22.98526 -21.24272 -20.25808 -19.11622 -18.72128 -18.64217 -17.39756 -16.59957 -16.19038 -15.44752 -15.23756 -15.00663 -14.62065 -14.37940 -14.27735 -14.12790 -14.08332 -14.03062 -13.86114 -13.39469 -13.37732 -12.74017 -12.64280 -12.47607 -12.31777 -11.97690 -11.91361 -11.72862 -11.43018 -11.15860 -10.98434 -10.79097 -10.54930 -10.31977 -9.74723 -9.64454 -9.43708 -8.99719 -8.72381 -8.42205 -7.89581 -5.93866 -3.89890 2.59310 3.33849 3.39782 3.47187 3.56152 3.63725 3.81718 4.09302 4.11838 4.56989 4.70079 4.79382 5.03748 5.08012 5.24360 5.33925 5.37403 5.40600 5.42275 5.50263 5.57690 5.61468 5.78193 5.88465 5.99727 6.07393 6.11866 6.21032 6.30645 6.47554 6.59112 6.65483 6.71061 7.08058 7.36825 7.41009 7.53518 7.73943 7.95109 8.65909 9.12151 9.70706 11.19915 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.005556 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.857771 B = 5037.950265 C = 6278.127009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 H 0.076 0.924 4 C -0.093 4.093 5 C -0.007 4.007 6 C -0.516 4.516 7 H 0.067 0.933 8 C 0.065 3.935 9 N -0.909 5.909 10 Si 0.877 3.123 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.261 1.261 14 N -0.524 5.524 15 C 0.057 3.943 16 C 0.036 3.964 17 N -0.521 5.521 18 C 0.018 3.982 19 C 0.412 3.588 20 F -0.175 7.175 21 F -0.190 7.190 22 F -0.182 7.182 23 C 0.030 3.970 24 C 0.056 3.944 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.003 0.997 32 H 0.261 0.739 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.652 1.314 -19.948 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.028 4.028 3 H 0.095 0.905 4 C -0.131 4.131 5 C -0.045 4.045 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.135 4.135 9 N -0.549 5.549 10 Si 0.704 3.296 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.185 1.185 14 N -0.248 5.248 15 C -0.071 4.071 16 C -0.091 4.091 17 N -0.243 5.243 18 C -0.113 4.113 19 C 0.356 3.644 20 F -0.156 7.156 21 F -0.171 7.171 22 F -0.164 7.164 23 C -0.097 4.097 24 C -0.072 4.072 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.022 0.978 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.468 1.272 -19.835 22.464 hybrid contribution 1.055 0.438 -0.519 1.255 sum -9.413 1.710 -20.355 22.491 Atomic orbital electron populations 1.22469 0.98364 1.01933 1.01402 1.21877 0.91592 0.98360 0.91018 0.90535 1.21529 0.99167 0.98947 0.93442 1.19487 0.91208 0.96041 0.97751 1.21241 0.92436 1.30534 1.11202 0.91436 1.25006 0.98449 0.95021 0.95030 1.69925 1.14134 1.41450 1.29401 0.86808 0.80533 0.79551 0.82659 1.20615 1.21740 1.18484 1.62305 1.58117 1.02561 1.01820 1.22126 0.98862 0.96746 0.89402 1.22744 0.98641 0.88894 0.98839 1.62436 1.56011 1.03711 1.02134 1.23727 0.85030 1.04318 0.98272 1.22338 0.94736 0.73697 0.73672 1.93177 1.87728 1.89222 1.45505 1.93177 1.90662 1.75119 1.58180 1.93163 1.93975 1.34763 1.94470 1.22741 1.02444 0.96039 0.88482 1.22181 0.96405 0.90872 0.97709 0.92220 0.93378 0.92353 0.92761 0.92734 0.94935 0.97842 0.92981 0.94179 0.90283 0.91987 0.89872 0.86368 0.86247 0.90891 0.90060 0.88945 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.41 37.16 0.31 -2.05 16 2 C 0.08 1.25 2.33 -67.71 -0.16 1.09 16 3 H 0.08 1.21 8.00 -51.93 -0.42 0.80 16 4 C -0.09 -1.81 4.53 -26.73 -0.12 -1.94 16 5 C -0.01 -0.18 3.97 -27.88 -0.11 -0.29 16 6 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 7 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 9 N -0.91 -28.79 13.96 55.43 0.77 -28.02 16 10 Si 0.88 22.72 27.47 -169.99 -4.67 18.05 16 11 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 14 N -0.52 -8.07 3.90 -226.48 -0.88 -8.96 16 15 C 0.06 0.73 5.35 -3.77 -0.02 0.71 16 16 C 0.04 0.43 4.15 -3.77 -0.02 0.41 16 17 N -0.52 -5.68 4.92 -234.47 -1.15 -6.83 16 18 C 0.02 0.15 5.76 -3.82 -0.02 0.13 16 19 C 0.41 4.56 2.82 37.16 0.10 4.67 16 20 F -0.17 -2.44 13.78 2.25 0.03 -2.41 16 21 F -0.19 -2.09 17.32 2.25 0.04 -2.05 16 22 F -0.18 -2.19 13.96 2.25 0.03 -2.15 16 23 C 0.03 0.38 5.24 -3.77 -0.02 0.36 16 24 C 0.06 0.79 4.72 -3.77 -0.02 0.77 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.57 6.80 -51.93 -0.35 0.21 16 27 H 0.06 0.75 6.39 -51.93 -0.33 0.42 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 1.07 6.44 -51.93 -0.33 0.74 16 30 H 0.03 0.82 6.58 -51.93 -0.34 0.47 16 31 H 0.00 0.08 7.57 -51.93 -0.39 -0.31 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 33 H 0.04 0.49 6.81 -51.93 -0.35 0.13 16 34 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 35 H 0.06 0.87 5.49 -51.93 -0.29 0.59 16 36 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 37 H 0.12 0.79 7.89 -51.93 -0.41 0.38 16 38 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.09 5.45 -51.93 -0.28 0.80 16 40 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 41 H 0.09 1.44 6.35 -51.93 -0.33 1.11 16 42 H 0.04 0.54 6.41 -51.93 -0.33 0.21 16 LS Contribution 323.34 15.07 4.87 4.87 Total: -1.00 -32.11 323.34 -7.72 -39.83 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -6.26 Total: -2.71 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -0.50 Total: -9.61 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -1.26 Total: -43.81 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.10 Total: -6.62 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.67 Total: 18.05 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.11 -7.72 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.367 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds