Wall clock time and date at job start Tue Mar 31 2020 07:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47104 * 120.00098 * 2 1 3 5 5 C 1.53005 * 109.47138 * 182.13971 * 4 2 1 6 6 C 1.50698 * 109.47138 * 184.76122 * 5 4 2 7 7 H 1.08001 * 120.00003 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99867 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00270 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99781 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47153 * 90.00486 * 10 8 6 12 12 H 1.48501 * 109.47026 * 209.99996 * 10 8 6 13 13 H 1.48498 * 109.47507 * 329.99922 * 10 8 6 14 14 N 1.46902 * 109.46964 * 239.99870 * 2 1 3 15 15 C 1.46960 * 110.99953 * 71.25911 * 14 2 1 16 16 C 1.53039 * 109.36437 * 176.81139 * 15 14 2 17 17 N 1.46961 * 109.36743 * 58.39887 * 16 15 14 18 18 C 1.46904 * 111.00003 * 176.80936 * 17 16 15 19 19 C 1.52999 * 109.46898 * 46.83819 * 18 17 16 20 20 F 1.39896 * 109.47253 * 53.49455 * 19 18 17 21 21 F 1.39903 * 109.46814 * 173.49318 * 19 18 17 22 22 F 1.39893 * 109.47105 * 293.49133 * 19 18 17 23 23 C 1.46951 * 110.87929 * 300.68125 * 17 16 15 24 24 C 1.46957 * 110.99834 * 307.45935 * 14 2 1 25 25 H 1.09003 * 109.46888 * 299.99498 * 1 2 3 26 26 H 1.08995 * 109.47023 * 59.99689 * 1 2 3 27 27 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47272 * 302.13372 * 4 2 1 29 29 H 1.09001 * 109.47704 * 62.14028 * 4 2 1 30 30 H 1.08997 * 109.47096 * 304.76048 * 5 4 2 31 31 H 1.09004 * 109.46957 * 64.75845 * 5 4 2 32 32 H 0.96998 * 120.00359 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.48885 * 296.77781 * 15 14 2 34 34 H 1.08997 * 109.48811 * 56.84230 * 15 14 2 35 35 H 1.09004 * 109.49167 * 298.43167 * 16 15 14 36 36 H 1.09001 * 109.49285 * 178.36586 * 16 15 14 37 37 H 1.09000 * 109.46949 * 166.83675 * 18 17 16 38 38 H 1.08996 * 109.47356 * 286.83804 * 18 17 16 39 39 H 1.08996 * 109.49035 * 299.35034 * 23 17 16 40 40 H 1.09004 * 109.49037 * 179.28546 * 23 17 16 41 41 H 1.09000 * 109.48832 * 303.14969 * 24 14 2 42 42 H 1.09001 * 109.49138 * 63.20242 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5691 -0.6748 1.2764 6 6 4.0756 -1.4840 2.4425 7 1 3.3768 -1.9814 3.0987 8 6 5.4312 -1.5895 2.6714 9 7 5.8732 -2.2961 3.6887 10 14 6.6398 -0.7298 1.5358 11 1 6.9118 0.6379 2.0464 12 1 7.9078 -1.5012 1.4872 13 1 6.0608 -0.6427 0.1711 14 7 2.0197 -0.6925 -1.1994 15 6 1.7796 0.1109 -2.4063 16 6 2.3735 -0.6071 -3.6204 17 7 1.7624 -1.9377 -3.7467 18 6 2.2520 -2.6301 -4.9462 19 6 3.7753 -2.5071 -5.0200 20 9 4.3377 -2.9510 -3.8185 21 9 4.2556 -3.2884 -6.0765 22 9 4.1253 -1.1694 -5.2326 23 6 2.0025 -2.7410 -2.5399 24 6 1.4085 -2.0230 -1.3257 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6458 -0.2300 2.1388 29 1 1.7084 -1.7594 1.2303 30 1 3.9618 -1.0899 0.3482 31 1 3.8994 0.3588 1.3806 32 1 6.8269 -2.3700 3.8500 33 1 0.7068 0.2406 -2.5494 34 1 2.2524 1.0865 -2.2937 35 1 3.4505 -0.7126 -3.4896 36 1 2.1713 -0.0271 -4.5208 37 1 1.9745 -3.6830 -4.8966 38 1 1.8077 -2.1787 -5.8332 39 1 3.0752 -2.8707 -2.3968 40 1 1.5297 -3.7167 -2.6525 41 1 1.6108 -2.6031 -0.4253 42 1 0.3315 -1.9176 -1.4562 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172501390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:45 Heat of formation + Delta-G solvation = -160.506963 kcal Electronic energy + Delta-G solvation = -25756.188465 eV Core-core repulsion = 21741.478271 eV Total energy + Delta-G solvation = -4014.710195 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.23846 -48.70975 -48.68096 -40.65781 -37.93901 -35.36126 -33.68209 -31.93376 -31.54390 -29.66589 -27.22069 -26.29748 -24.69467 -23.86433 -22.84525 -21.64544 -20.31748 -19.61914 -19.52014 -18.81844 -18.26506 -17.30152 -16.42116 -16.29678 -16.24524 -15.94802 -15.57115 -15.42724 -15.19804 -15.09652 -15.01813 -14.85526 -14.79065 -14.36407 -14.30801 -14.16517 -13.58137 -13.46302 -13.28301 -13.11179 -12.93178 -12.75387 -12.66884 -12.26783 -11.96062 -11.85939 -11.67983 -11.58030 -11.36152 -11.34227 -11.00576 -10.72705 -9.63947 -9.00894 -8.27596 -6.28481 1.32411 1.35696 1.49785 1.79641 2.37045 2.50309 2.84522 3.00709 3.04256 3.09365 3.27371 3.85164 3.91435 4.01205 4.19196 4.29181 4.35020 4.43193 4.45887 4.49435 4.52851 4.57382 4.72985 4.83481 4.85944 4.92243 4.97070 5.03038 5.08538 5.12699 5.26581 5.40721 5.60050 5.67953 5.71091 5.73645 5.78786 6.27723 6.32382 6.34956 6.80262 7.35780 8.89483 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.005556 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.857771 B = 5037.950265 C = 6278.127009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.077 0.923 4 C -0.087 4.087 5 C 0.002 3.998 6 C -0.524 4.524 7 H 0.030 0.970 8 C 0.006 3.994 9 N -0.954 5.954 10 Si 0.945 3.055 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.252 1.252 14 N -0.550 5.550 15 C 0.059 3.941 16 C 0.039 3.961 17 N -0.514 5.514 18 C 0.023 3.977 19 C 0.407 3.593 20 F -0.196 7.196 21 F -0.190 7.190 22 F -0.189 7.189 23 C 0.033 3.967 24 C 0.059 3.941 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.025 0.975 31 H 0.004 0.996 32 H 0.264 0.736 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.046 0.954 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 2.389 -22.626 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 H 0.095 0.905 4 C -0.125 4.125 5 C -0.036 4.036 6 C -0.562 4.562 7 H 0.049 0.951 8 C -0.191 4.191 9 N -0.596 5.596 10 Si 0.770 3.230 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.176 1.176 14 N -0.275 5.275 15 C -0.069 4.069 16 C -0.089 4.089 17 N -0.236 5.236 18 C -0.107 4.107 19 C 0.351 3.649 20 F -0.178 7.178 21 F -0.172 7.172 22 F -0.171 7.171 23 C -0.095 4.095 24 C -0.069 4.069 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.125 0.875 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.724 2.355 -22.525 25.503 hybrid contribution 1.430 0.043 0.354 1.473 sum -10.295 2.398 -22.172 24.562 Atomic orbital electron populations 1.22335 0.95811 1.02318 1.02578 1.21673 0.93519 0.97519 0.89416 0.90452 1.21396 0.95890 0.99275 0.95890 1.19356 0.94478 0.94718 0.95020 1.21629 0.92124 1.30479 1.12011 0.95118 1.25918 1.00602 0.95890 0.96641 1.70068 1.14770 1.43287 1.31453 0.85722 0.77871 0.78757 0.80683 1.19226 1.21321 1.17600 1.62233 1.59135 1.03432 1.02669 1.22168 0.99776 0.96484 0.88494 1.22726 0.97055 0.89697 0.99401 1.62445 1.55621 1.03302 1.02188 1.23968 0.82779 1.05824 0.98148 1.22826 0.96033 0.73239 0.72837 1.93144 1.88272 1.89453 1.46936 1.93172 1.90855 1.75105 1.58069 1.93147 1.94185 1.35301 1.94441 1.22673 1.00799 0.97145 0.88849 1.22114 0.97241 0.90166 0.97394 0.91706 0.91499 0.92348 0.93007 0.93521 0.95643 0.97750 0.92738 0.92764 0.90149 0.94526 0.87538 0.84232 0.83191 0.93613 0.87917 0.91522 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.41 71.98 0.61 -3.40 16 2 C 0.09 2.60 2.33 44.92 0.10 2.71 16 3 H 0.08 2.30 8.00 -2.39 -0.02 2.29 16 4 C -0.09 -3.39 4.53 30.60 0.14 -3.25 16 5 C 0.00 0.08 3.97 29.85 0.12 0.20 16 6 C -0.52 -31.40 9.66 25.60 0.25 -31.15 16 7 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 8 C 0.01 0.34 5.47 84.65 0.46 0.80 16 9 N -0.95 -62.00 13.96 21.45 0.30 -61.70 16 10 Si 0.95 47.34 27.47 68.60 1.88 49.23 16 11 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 13 H -0.25 -12.19 6.54 99.48 0.65 -11.54 16 14 N -0.55 -16.19 3.90 -870.46 -3.39 -19.58 16 15 C 0.06 1.35 5.35 86.30 0.46 1.82 16 16 C 0.04 0.82 4.15 86.30 0.36 1.18 16 17 N -0.51 -9.74 4.92 -895.73 -4.40 -14.14 16 18 C 0.02 0.32 5.76 86.30 0.50 0.82 16 19 C 0.41 8.31 2.82 71.98 0.20 8.52 16 20 F -0.20 -5.41 13.78 44.97 0.62 -4.79 16 21 F -0.19 -3.87 17.32 44.97 0.78 -3.09 16 22 F -0.19 -4.24 13.96 44.97 0.63 -3.61 16 23 C 0.03 0.77 5.24 86.31 0.45 1.23 16 24 C 0.06 1.58 4.72 86.31 0.41 1.99 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.33 6.80 -2.39 -0.02 1.32 16 27 H 0.06 1.36 6.39 -2.39 -0.02 1.35 16 28 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.88 6.44 -2.39 -0.02 1.86 16 30 H 0.03 1.28 6.58 -2.39 -0.02 1.26 16 31 H 0.00 0.20 7.57 -2.38 -0.02 0.18 16 32 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 33 H 0.05 1.11 6.81 -2.38 -0.02 1.09 16 34 H 0.08 1.81 8.06 -2.39 -0.02 1.79 16 35 H 0.04 0.99 5.49 -2.38 -0.01 0.97 16 36 H 0.11 1.77 7.89 -2.39 -0.02 1.75 16 37 H 0.14 1.35 7.89 -2.39 -0.02 1.33 16 38 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 1.35 5.45 -2.39 -0.01 1.34 16 40 H 0.10 1.92 8.01 -2.39 -0.02 1.91 16 41 H 0.07 2.11 6.35 -2.39 -0.02 2.09 16 42 H 0.06 1.33 6.41 -2.39 -0.02 1.32 16 Total: -1.00 -70.98 323.34 1.43 -69.55 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.96 Total: 6.69 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 4.06 Total: -18.54 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -7.50 Total: -95.43 kcal Atomic # 9 Polarization: -13.52 SS G_CDS: 2.03 Total: -11.49 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.88 Total: 49.23 kcal Total: -70.98 1.43 -69.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.959 kcal (2) G-P(sol) polarization free energy of solvation -70.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds