Wall clock time and date at job start Tue Mar 31 2020 07:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99951 * 2 1 4 4 O 1.20826 * 120.00050 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99960 * 180.02562 * 3 2 1 6 6 C 1.47200 * 109.57319 * 300.15248 * 5 3 2 7 7 N 3.71937 * 145.12845 * 87.63222 * 2 1 3 8 8 C 1.53120 * 109.52358 * 179.97438 * 5 3 2 9 9 C 1.53037 * 109.27883 * 182.43776 * 8 5 3 10 10 N 1.46847 * 109.52341 * 59.18174 * 9 8 5 11 11 C 1.46898 * 111.00234 * 174.15775 * 10 9 8 12 12 H 1.09010 * 109.46940 * 58.37573 * 11 10 9 13 13 C 1.53002 * 109.47283 * 298.38105 * 11 10 9 14 14 C 1.52991 * 109.47186 * 178.37546 * 11 10 9 15 15 C 1.53008 * 109.47242 * 182.77732 * 14 11 10 16 16 C 1.50693 * 109.47357 * 174.57714 * 15 14 11 17 17 H 1.08009 * 120.00132 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00521 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99168 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00538 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46921 * 59.99857 * 20 18 16 22 22 H 1.48495 * 109.47089 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46682 * 299.99900 * 20 18 16 24 24 C 1.46847 * 111.19690 * 298.25456 * 10 9 8 25 25 C 1.53040 * 109.52117 * 61.74401 * 24 10 9 26 26 H 1.08998 * 109.46965 * 60.00092 * 1 2 3 27 27 H 1.09004 * 109.46749 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47047 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.50331 * 62.49688 * 8 5 3 30 30 H 1.09002 * 109.50536 * 302.37828 * 8 5 3 31 31 H 1.08997 * 109.46549 * 299.16194 * 9 8 5 32 32 H 1.09010 * 109.45265 * 179.18971 * 9 8 5 33 33 H 1.09000 * 109.46594 * 299.99773 * 13 11 10 34 34 H 1.08994 * 109.47330 * 59.99397 * 13 11 10 35 35 H 1.08996 * 109.47307 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.47102 * 62.77873 * 14 11 10 37 37 H 1.09003 * 109.47512 * 302.77524 * 14 11 10 38 38 H 1.09004 * 109.46832 * 294.57475 * 15 14 11 39 39 H 1.08994 * 109.46769 * 54.57242 * 15 14 11 40 40 H 0.97004 * 119.99577 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.46475 * 181.75704 * 24 10 9 42 42 H 1.08997 * 109.46439 * 301.72741 * 24 10 9 43 43 H 1.08999 * 109.50518 * 180.88503 * 25 24 10 44 44 H 1.08997 * 109.50502 * 60.75705 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0957 0.6047 1.1983 7 7 4.5036 0.0879 2.1247 8 6 4.0018 2.7428 -0.0011 9 6 5.5291 2.8167 -0.0631 10 7 6.0039 2.1463 -1.2803 11 6 7.4536 2.3173 -1.4443 12 1 7.9680 1.9142 -0.5718 13 6 7.7790 3.8057 -1.5854 14 6 7.9164 1.5729 -2.6982 15 6 9.4360 1.6930 -2.8310 16 6 9.9072 0.8511 -3.9886 17 1 9.1943 0.2864 -4.5711 18 6 11.2485 0.8016 -4.3041 19 7 12.1166 1.4889 -3.5945 20 14 11.8327 -0.2426 -5.7386 21 1 11.1870 0.2294 -6.9897 22 1 13.3074 -0.1259 -5.8675 23 1 11.4681 -1.6619 -5.4984 24 6 5.6384 0.7241 -1.2801 25 6 4.1143 0.5877 -1.2544 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.6508 3.2269 0.9103 30 1 3.5775 3.2480 -0.8688 31 1 5.9525 2.3235 0.8118 32 1 5.8417 3.8609 -0.0782 33 1 7.2646 4.2088 -2.4578 34 1 7.4492 4.3360 -0.6921 35 1 8.8547 3.9326 -1.7066 36 1 7.4394 2.0085 -3.5761 37 1 7.6407 0.5213 -2.6191 38 1 9.7041 2.7349 -3.0067 39 1 9.9094 1.3459 -1.9127 40 1 13.0603 1.4538 -3.8162 41 1 6.0305 0.2482 -2.1789 42 1 6.0612 0.2406 -0.3995 43 1 3.8437 -0.4681 -1.2384 44 1 3.6918 1.0589 -2.1417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:38 Heat of formation + Delta-G solvation = -62.541639 kcal Electronic energy + Delta-G solvation = -24071.822015 eV Core-core repulsion = 20603.216656 eV Total energy + Delta-G solvation = -3468.605359 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.43167 -39.48350 -37.14325 -36.83545 -35.18028 -33.23004 -31.54357 -31.26588 -28.94246 -28.03938 -25.94884 -25.12812 -23.15376 -22.03207 -21.99567 -21.09095 -19.25294 -18.51127 -17.44599 -17.16878 -16.56799 -16.17985 -15.16581 -15.09481 -14.59593 -14.53253 -14.41449 -14.23591 -14.04240 -13.75228 -13.29874 -12.96621 -12.84199 -12.65503 -12.50756 -12.31500 -12.26800 -11.85106 -11.70835 -11.50834 -11.34577 -11.23315 -11.18289 -11.08197 -10.94456 -10.73560 -10.57949 -10.47262 -10.07312 -9.60403 -9.31199 -9.02455 -8.32890 -8.16309 -5.99220 -4.01253 1.55694 1.95454 2.37757 2.63148 3.33731 3.36806 3.38306 3.40510 3.93339 4.12238 4.26187 4.35952 4.46982 4.70891 4.79983 4.89876 5.05702 5.14770 5.16269 5.31794 5.35357 5.36663 5.41610 5.52813 5.62655 5.75875 5.82771 5.85361 5.92375 5.94073 5.99582 6.30419 6.37391 6.61910 6.69091 6.74282 7.08159 7.09916 7.22697 7.28290 7.35568 7.68693 7.84329 8.00990 8.44091 9.05782 9.62668 11.12078 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.003125 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.901537 B = 8956.445642 C = 9384.922990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.351 6.351 3 C 0.480 3.520 4 O -0.485 6.485 5 C 0.053 3.947 6 C 0.213 3.787 7 N -0.400 5.400 8 C -0.093 4.093 9 C 0.047 3.953 10 N -0.531 5.531 11 C 0.081 3.919 12 H 0.037 0.963 13 C -0.142 4.142 14 C -0.105 4.105 15 C 0.023 3.977 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.046 3.954 25 C -0.102 4.102 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.031 0.969 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.020 0.980 39 H 0.012 0.988 40 H 0.260 0.740 41 H 0.104 0.896 42 H 0.034 0.966 43 H 0.089 0.911 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.034 0.644 6.852 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.267 6.267 3 C 0.320 3.680 4 O -0.370 6.370 5 C 0.048 3.952 6 C -0.106 4.106 7 N -0.075 5.075 8 C -0.131 4.131 9 C -0.082 4.082 10 N -0.256 5.256 11 C -0.026 4.026 12 H 0.055 0.945 13 C -0.199 4.199 14 C -0.143 4.143 15 C -0.014 4.014 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.082 4.082 25 C -0.141 4.141 26 H 0.087 0.913 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.030 0.970 40 H 0.070 0.930 41 H 0.122 0.878 42 H 0.052 0.948 43 H 0.108 0.892 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.695 0.416 7.887 23.088 hybrid contribution 0.441 -0.780 -0.332 0.955 sum -21.253 -0.364 7.555 22.559 Atomic orbital electron populations 1.23370 0.75530 1.04161 1.02871 1.86532 1.23987 1.32645 1.83578 1.22955 0.90378 0.81919 0.72795 1.90708 1.66187 1.36122 1.43977 1.18321 0.87409 0.98884 0.90570 1.28200 0.94538 0.93963 0.93873 1.81260 1.07413 1.08219 1.10567 1.21687 0.96693 0.89511 1.05251 1.22209 0.93086 1.01246 0.91614 1.62088 1.15928 1.11781 1.35853 1.21803 0.84445 0.97185 0.99130 0.94543 1.21886 1.02587 0.94493 1.00957 1.21796 0.99896 0.97970 0.94612 1.19117 0.88309 0.97328 0.96685 1.21220 0.92340 1.27929 1.14339 0.92781 1.25017 0.97002 0.95778 0.96640 1.69955 1.02214 1.41580 1.39795 0.86677 0.77515 0.80895 0.83031 1.20212 1.21352 1.20299 1.22235 0.93108 0.89996 1.02858 1.21822 0.97094 1.01214 0.93991 0.91320 0.87724 0.91717 0.89884 0.87662 0.95045 0.88733 0.92006 0.93852 0.91037 0.92394 0.93140 0.96134 0.96974 0.92989 0.87813 0.94793 0.89231 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.23 10.40 -39.24 -0.41 -3.63 16 3 C 0.48 4.88 6.53 36.00 0.24 5.11 16 4 O -0.48 -5.65 15.73 -18.75 -0.29 -5.95 16 5 C 0.05 0.53 0.66 -158.32 -0.11 0.43 16 6 C 0.21 2.59 11.51 -20.74 -0.24 2.35 16 7 N -0.40 -5.72 18.54 42.17 0.78 -4.94 16 8 C -0.09 -0.90 4.16 -26.65 -0.11 -1.01 16 9 C 0.05 0.53 5.04 -3.83 -0.02 0.51 16 10 N -0.53 -7.04 4.52 -226.69 -1.03 -8.07 16 11 C 0.08 1.32 2.17 -67.72 -0.15 1.17 16 12 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 13 C -0.14 -2.16 8.73 37.16 0.32 -1.84 16 14 C -0.10 -2.04 4.33 -26.73 -0.12 -2.16 16 15 C 0.02 0.58 4.53 -27.88 -0.13 0.45 16 16 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 17 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.05 0.57 4.89 -3.83 -0.02 0.55 16 25 C -0.10 -0.98 4.79 -26.65 -0.13 -1.11 16 26 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.98 8.04 -51.93 -0.42 0.56 16 31 H 0.03 0.39 7.31 -51.93 -0.38 0.01 16 32 H 0.09 1.01 6.06 -51.92 -0.31 0.69 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.56 6.31 -51.93 -0.33 0.23 16 35 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.96 6.04 -51.93 -0.31 0.65 16 38 H 0.02 0.54 6.78 -51.93 -0.35 0.18 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 41 H 0.10 1.36 5.81 -51.93 -0.30 1.05 16 42 H 0.03 0.46 7.31 -51.93 -0.38 0.08 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -31.78 353.57 -6.60 -38.38 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -6.90 Total: -4.08 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 0.21 Total: -7.52 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.49 Total: -38.99 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.70 Total: -9.58 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.78 -6.60 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.164 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds