Wall clock time and date at job start Tue Mar 31 2020 07:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99951 * 2 1 4 4 O 1.20826 * 120.00050 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99960 * 180.02562 * 3 2 1 6 6 C 1.47200 * 109.57319 * 300.15248 * 5 3 2 7 7 N 3.71937 * 145.12845 * 87.63222 * 2 1 3 8 8 C 1.53120 * 109.52358 * 179.97438 * 5 3 2 9 9 C 1.53037 * 109.27883 * 182.43776 * 8 5 3 10 10 N 1.46847 * 109.52341 * 59.18174 * 9 8 5 11 11 C 1.46898 * 111.00234 * 174.15775 * 10 9 8 12 12 H 1.09010 * 109.46940 * 58.37573 * 11 10 9 13 13 C 1.53002 * 109.47283 * 298.38105 * 11 10 9 14 14 C 1.52991 * 109.47186 * 178.37546 * 11 10 9 15 15 C 1.53008 * 109.47242 * 182.77732 * 14 11 10 16 16 C 1.50693 * 109.47357 * 174.57714 * 15 14 11 17 17 H 1.08009 * 120.00132 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00521 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99168 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00538 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46921 * 59.99857 * 20 18 16 22 22 H 1.48495 * 109.47089 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46682 * 299.99900 * 20 18 16 24 24 C 1.46847 * 111.19690 * 298.25456 * 10 9 8 25 25 C 1.53040 * 109.52117 * 61.74401 * 24 10 9 26 26 H 1.08998 * 109.46965 * 60.00092 * 1 2 3 27 27 H 1.09004 * 109.46749 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47047 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.50331 * 62.49688 * 8 5 3 30 30 H 1.09002 * 109.50536 * 302.37828 * 8 5 3 31 31 H 1.08997 * 109.46549 * 299.16194 * 9 8 5 32 32 H 1.09010 * 109.45265 * 179.18971 * 9 8 5 33 33 H 1.09000 * 109.46594 * 299.99773 * 13 11 10 34 34 H 1.08994 * 109.47330 * 59.99397 * 13 11 10 35 35 H 1.08996 * 109.47307 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.47102 * 62.77873 * 14 11 10 37 37 H 1.09003 * 109.47512 * 302.77524 * 14 11 10 38 38 H 1.09004 * 109.46832 * 294.57475 * 15 14 11 39 39 H 1.08994 * 109.46769 * 54.57242 * 15 14 11 40 40 H 0.97004 * 119.99577 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.46475 * 181.75704 * 24 10 9 42 42 H 1.08997 * 109.46439 * 301.72741 * 24 10 9 43 43 H 1.08999 * 109.50518 * 180.88503 * 25 24 10 44 44 H 1.08997 * 109.50502 * 60.75705 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0957 0.6047 1.1983 7 7 4.5036 0.0879 2.1247 8 6 4.0018 2.7428 -0.0011 9 6 5.5291 2.8167 -0.0631 10 7 6.0039 2.1463 -1.2803 11 6 7.4536 2.3173 -1.4443 12 1 7.9680 1.9142 -0.5718 13 6 7.7790 3.8057 -1.5854 14 6 7.9164 1.5729 -2.6982 15 6 9.4360 1.6930 -2.8310 16 6 9.9072 0.8511 -3.9886 17 1 9.1943 0.2864 -4.5711 18 6 11.2485 0.8016 -4.3041 19 7 12.1166 1.4889 -3.5945 20 14 11.8327 -0.2426 -5.7386 21 1 11.1870 0.2294 -6.9897 22 1 13.3074 -0.1259 -5.8675 23 1 11.4681 -1.6619 -5.4984 24 6 5.6384 0.7241 -1.2801 25 6 4.1143 0.5877 -1.2544 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.6508 3.2269 0.9103 30 1 3.5775 3.2480 -0.8688 31 1 5.9525 2.3235 0.8118 32 1 5.8417 3.8609 -0.0782 33 1 7.2646 4.2088 -2.4578 34 1 7.4492 4.3360 -0.6921 35 1 8.8547 3.9326 -1.7066 36 1 7.4394 2.0085 -3.5761 37 1 7.6407 0.5213 -2.6191 38 1 9.7041 2.7349 -3.0067 39 1 9.9094 1.3459 -1.9127 40 1 13.0603 1.4538 -3.8162 41 1 6.0305 0.2482 -2.1789 42 1 6.0612 0.2406 -0.3995 43 1 3.8437 -0.4681 -1.2384 44 1 3.6918 1.0589 -2.1417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:37 Heat of formation + Delta-G solvation = -81.906410 kcal Electronic energy + Delta-G solvation = -24072.661735 eV Core-core repulsion = 20603.216656 eV Total energy + Delta-G solvation = -3469.445079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.23666 -40.43536 -38.19452 -37.67732 -36.42690 -35.02441 -33.03479 -32.21726 -30.39282 -28.75007 -27.26710 -26.50063 -24.34164 -23.34283 -22.83440 -22.28334 -20.70512 -19.31180 -18.58640 -18.16191 -17.93502 -17.20980 -16.54213 -16.15023 -16.03871 -15.80161 -15.48940 -15.29006 -14.96377 -14.70203 -14.34881 -14.08445 -14.03551 -13.87549 -13.75625 -13.62893 -13.27682 -13.01678 -12.83105 -12.78268 -12.65671 -12.52838 -12.37244 -12.28994 -12.15941 -12.02833 -11.84513 -11.57512 -11.39694 -11.33404 -11.17666 -10.88744 -10.48997 -9.30475 -8.16718 -6.26970 0.75548 1.17311 1.41879 1.42170 1.44610 1.52278 1.78445 2.43072 2.48463 2.85609 3.16756 3.30539 3.43251 3.61342 3.96722 4.10242 4.18015 4.20879 4.29596 4.30856 4.37046 4.45090 4.51904 4.62765 4.70285 4.73883 4.81197 4.84974 4.93941 5.02007 5.03759 5.05874 5.08970 5.19729 5.21169 5.30625 5.46880 5.56549 5.82934 5.90908 6.09280 6.16732 6.17468 6.31789 6.47158 6.90972 7.42019 8.94819 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024929 B = 0.003125 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.901537 B = 8956.445642 C = 9384.922990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.487 3.513 4 O -0.499 6.499 5 C 0.055 3.945 6 C 0.231 3.769 7 N -0.442 5.442 8 C -0.087 4.087 9 C 0.046 3.954 10 N -0.525 5.525 11 C 0.089 3.911 12 H 0.017 0.983 13 C -0.136 4.136 14 C -0.090 4.090 15 C 0.029 3.971 16 C -0.541 4.541 17 H 0.061 0.939 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.962 3.038 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.044 3.956 25 C -0.095 4.095 26 H 0.075 0.925 27 H 0.130 0.870 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.019 0.981 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.000 1.000 39 H -0.019 1.019 40 H 0.262 0.738 41 H 0.096 0.904 42 H 0.018 0.982 43 H 0.104 0.896 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.230 0.314 5.838 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.327 3.673 4 O -0.386 6.386 5 C 0.050 3.950 6 C -0.087 4.087 7 N -0.117 5.117 8 C -0.125 4.125 9 C -0.081 4.081 10 N -0.249 5.249 11 C -0.019 4.019 12 H 0.035 0.965 13 C -0.194 4.194 14 C -0.128 4.128 15 C -0.009 4.009 16 C -0.579 4.579 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.786 3.214 21 H -0.190 1.190 22 H -0.211 1.211 23 H -0.193 1.193 24 C -0.084 4.084 25 C -0.133 4.133 26 H 0.093 0.907 27 H 0.148 0.852 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.037 0.963 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.019 0.981 39 H -0.001 1.001 40 H 0.071 0.929 41 H 0.114 0.886 42 H 0.036 0.964 43 H 0.123 0.877 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.920 0.074 6.877 24.889 hybrid contribution 1.082 -0.688 0.021 1.283 sum -22.838 -0.614 6.897 23.865 Atomic orbital electron populations 1.23682 0.73718 1.06058 1.03216 1.86520 1.25768 1.31963 1.83132 1.22744 0.90025 0.82044 0.72436 1.90708 1.66410 1.36641 1.44846 1.18426 0.87846 0.98977 0.89743 1.28570 0.93435 0.93027 0.93678 1.81275 1.08839 1.09638 1.11986 1.21678 0.95037 0.89362 1.06447 1.22284 0.94385 1.01391 0.90063 1.62079 1.13345 1.12525 1.36993 1.21540 0.86463 0.97236 0.96623 0.96476 1.21808 1.00890 0.94086 1.02579 1.21552 0.95947 0.98827 0.96482 1.18994 0.91951 0.95470 0.94476 1.21713 0.92902 1.28194 1.15078 0.92089 1.25962 0.97268 0.97079 0.99568 1.70098 1.02538 1.43192 1.41671 0.85551 0.76927 0.79286 0.79611 1.18961 1.21132 1.19296 1.22266 0.95231 0.89188 1.01750 1.21811 0.94656 1.02465 0.94376 0.90651 0.85165 0.91734 0.88781 0.86386 0.96319 0.87621 0.91330 0.91193 0.93771 0.92015 0.92857 0.98124 1.00063 0.92924 0.88550 0.96377 0.87738 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -5.71 10.40 -51.37 -0.53 -6.24 16 3 C 0.49 8.74 6.53 71.24 0.47 9.20 16 4 O -0.50 -10.42 15.73 21.96 0.35 -10.08 16 5 C 0.05 0.99 0.66 -54.65 -0.04 0.96 16 6 C 0.23 5.37 11.51 89.44 1.03 6.40 16 7 N -0.44 -12.53 18.54 20.01 0.37 -12.16 16 8 C -0.09 -1.47 4.16 30.65 0.13 -1.34 16 9 C 0.05 0.98 5.04 86.33 0.43 1.42 16 10 N -0.52 -13.24 4.52 -871.11 -3.94 -17.18 16 11 C 0.09 2.90 2.17 44.91 0.10 3.00 16 12 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 13 C -0.14 -4.12 8.73 71.98 0.63 -3.49 16 14 C -0.09 -3.55 4.33 30.59 0.13 -3.42 16 15 C 0.03 1.48 4.53 29.85 0.14 1.61 16 16 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 20 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.04 1.03 4.89 86.33 0.42 1.45 16 25 C -0.09 -1.59 4.79 30.65 0.15 -1.44 16 26 H 0.07 0.64 8.13 -2.39 -0.02 0.62 16 27 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.12 1.79 8.04 -2.39 -0.02 1.77 16 31 H 0.02 0.45 7.31 -2.39 -0.02 0.43 16 32 H 0.11 2.01 6.06 -2.38 -0.01 1.99 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 1.71 6.31 -2.39 -0.02 1.70 16 35 H 0.04 1.57 6.62 -2.39 -0.02 1.55 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.05 2.05 6.04 -2.39 -0.01 2.03 16 38 H 0.00 0.02 6.78 -2.39 -0.02 0.01 16 39 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 40 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.10 2.43 5.81 -2.39 -0.01 2.42 16 42 H 0.02 0.49 7.31 -2.39 -0.02 0.47 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -69.45 353.57 5.02 -64.43 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 0.99 Total: 5.88 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 5.48 Total: -14.03 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -3.29 Total: -86.07 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.19 Total: -16.32 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -69.45 5.02 -64.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.475 kcal (2) G-P(sol) polarization free energy of solvation -69.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds