Wall clock time and date at job start Tue Mar 31 2020 07:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99682 * 2 1 4 4 O 1.20814 * 120.00229 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99488 * 180.02562 * 3 2 1 6 6 C 1.47199 * 109.57758 * 300.15987 * 5 3 2 7 7 N 3.71932 * 145.13293 * 87.63525 * 2 1 3 8 8 C 1.53120 * 109.52178 * 179.97438 * 5 3 2 9 9 C 1.53034 * 109.28178 * 182.43931 * 8 5 3 10 10 N 1.46850 * 109.52339 * 59.18181 * 9 8 5 11 11 C 1.46894 * 111.00179 * 174.16327 * 10 9 8 12 12 H 1.08998 * 109.47176 * 310.88385 * 11 10 9 13 13 C 1.52992 * 109.47478 * 70.88952 * 11 10 9 14 14 C 1.53002 * 109.46934 * 190.89046 * 11 10 9 15 15 C 1.52999 * 109.47498 * 64.02293 * 14 11 10 16 16 C 1.50692 * 109.47600 * 179.97438 * 15 14 11 17 17 H 1.08007 * 119.99693 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00394 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00096 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99920 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47265 * 90.00039 * 20 18 16 22 22 H 1.48502 * 109.47364 * 210.00480 * 20 18 16 23 23 H 1.48507 * 109.47157 * 330.00244 * 20 18 16 24 24 C 1.46846 * 111.19886 * 298.26089 * 10 9 8 25 25 C 1.53043 * 109.52354 * 61.73890 * 24 10 9 26 26 H 1.09008 * 109.46847 * 299.99708 * 1 2 3 27 27 H 1.08998 * 109.47530 * 59.99491 * 1 2 3 28 28 H 1.08998 * 109.46914 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.50272 * 62.49985 * 8 5 3 30 30 H 1.09000 * 109.50609 * 302.38858 * 8 5 3 31 31 H 1.09001 * 109.46378 * 299.17150 * 9 8 5 32 32 H 1.09002 * 109.45861 * 179.19535 * 9 8 5 33 33 H 1.09000 * 109.47162 * 60.00053 * 13 11 10 34 34 H 1.08998 * 109.47089 * 299.99765 * 13 11 10 35 35 H 1.09004 * 109.47321 * 179.97438 * 13 11 10 36 36 H 1.09008 * 109.47254 * 184.02183 * 14 11 10 37 37 H 1.09000 * 109.47488 * 304.01815 * 14 11 10 38 38 H 1.09007 * 109.47170 * 300.00538 * 15 14 11 39 39 H 1.09003 * 109.46702 * 59.99568 * 15 14 11 40 40 H 0.97005 * 119.99548 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.46926 * 181.75563 * 24 10 9 42 42 H 1.09000 * 109.46040 * 301.72482 * 24 10 9 43 43 H 1.08999 * 109.50147 * 180.88244 * 25 24 10 44 44 H 1.08995 * 109.53355 * 60.78399 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0958 0.6046 1.1982 7 7 4.5036 0.0877 2.1244 8 6 4.0018 2.7428 -0.0011 9 6 5.5291 2.8168 -0.0632 10 7 6.0038 2.1465 -1.2804 11 6 7.4535 2.3174 -1.4443 12 1 7.7114 3.3694 -1.3227 13 6 8.1875 1.4871 -0.3895 14 6 7.8677 1.8491 -2.8408 15 6 7.2117 2.7440 -3.8942 16 6 7.6201 2.2831 -5.2696 17 1 8.2811 1.4363 -5.3813 18 6 7.1500 2.9425 -6.3855 19 7 7.5060 2.5400 -7.5859 20 14 6.0063 4.4068 -6.1925 21 1 6.8087 5.6529 -6.1000 22 1 5.1015 4.4866 -7.3674 23 1 5.1992 4.2449 -4.9564 24 6 5.6383 0.7242 -1.2803 25 6 4.1142 0.5878 -1.2545 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.6508 3.2269 0.9103 30 1 3.5773 3.2481 -0.8687 31 1 5.9525 2.3234 0.8117 32 1 5.8417 3.8609 -0.0781 33 1 7.9297 0.4351 -0.5112 34 1 7.8925 1.8208 0.6054 35 1 9.2633 1.6136 -0.5114 36 1 8.9518 1.9088 -2.9374 37 1 7.5460 0.8182 -2.9886 38 1 6.1276 2.6844 -3.7976 39 1 7.5335 3.7749 -3.7464 40 1 7.1749 3.0037 -8.3710 41 1 6.0303 0.2483 -2.1791 42 1 6.0612 0.2407 -0.3997 43 1 3.8436 -0.4680 -1.2386 44 1 3.6911 1.0586 -2.1418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:40 Heat of formation + Delta-G solvation = -58.789570 kcal Electronic energy + Delta-G solvation = -24647.084892 eV Core-core repulsion = 21178.642235 eV Total energy + Delta-G solvation = -3468.442657 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39285 -39.57487 -37.18898 -36.80722 -35.12196 -33.08392 -31.54984 -30.96843 -29.52087 -28.14433 -25.88818 -25.14625 -23.53542 -21.99817 -21.92221 -20.68748 -19.38268 -18.40148 -17.39668 -16.89460 -16.59384 -16.32813 -15.66989 -15.11514 -14.57590 -14.55453 -14.21150 -14.01765 -13.90311 -13.48273 -13.31428 -13.11886 -12.80298 -12.59373 -12.49768 -12.40459 -12.32942 -12.20538 -12.00145 -11.62436 -11.57036 -11.35499 -11.16274 -11.01544 -10.87398 -10.80997 -10.52926 -10.34906 -9.77506 -9.66683 -9.46554 -9.02434 -8.44450 -8.04668 -5.95618 -3.92225 1.62018 1.99359 2.37152 2.64669 3.38613 3.39086 3.46171 3.53257 3.95220 4.16525 4.31446 4.41327 4.54877 4.77228 4.86755 4.93198 5.06067 5.16403 5.20050 5.23176 5.32289 5.40314 5.45855 5.48303 5.49721 5.55746 5.75252 5.84922 5.90259 5.92774 6.01969 6.08550 6.14778 6.24046 6.48597 6.65439 7.03931 7.10077 7.25166 7.27256 7.29922 7.49238 7.69176 7.92393 8.63775 9.10334 9.68489 11.18122 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.004632 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.330663 B = 6043.981854 C = 7058.924202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.479 3.521 4 O -0.483 6.483 5 C 0.053 3.947 6 C 0.217 3.783 7 N -0.405 5.405 8 C -0.095 4.095 9 C 0.050 3.950 10 N -0.520 5.520 11 C 0.080 3.920 12 H 0.081 0.919 13 C -0.185 4.185 14 C -0.094 4.094 15 C -0.006 4.006 16 C -0.518 4.518 17 H 0.067 0.933 18 C 0.065 3.935 19 N -0.909 5.909 20 Si 0.878 3.122 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.259 1.259 24 C 0.048 3.952 25 C -0.105 4.105 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.033 0.967 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.032 0.968 39 H 0.005 0.995 40 H 0.261 0.739 41 H 0.102 0.898 42 H 0.036 0.964 43 H 0.089 0.911 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 -3.317 17.313 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.319 3.681 4 O -0.368 6.368 5 C 0.048 3.952 6 C -0.101 4.101 7 N -0.080 5.080 8 C -0.133 4.133 9 C -0.078 4.078 10 N -0.244 5.244 11 C -0.028 4.028 12 H 0.099 0.901 13 C -0.244 4.244 14 C -0.131 4.131 15 C -0.044 4.044 16 C -0.556 4.556 17 H 0.085 0.915 18 C -0.135 4.135 19 N -0.549 5.549 20 Si 0.705 3.295 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.183 1.183 24 C -0.079 4.079 25 C -0.144 4.144 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.051 0.949 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.023 0.977 40 H 0.070 0.930 41 H 0.120 0.880 42 H 0.054 0.946 43 H 0.108 0.892 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.900 -3.547 18.140 21.459 hybrid contribution -0.548 0.613 0.298 0.874 sum -11.448 -2.935 18.439 21.901 Atomic orbital electron populations 1.23369 0.75529 1.04133 1.02901 1.86523 1.23995 1.32638 1.83625 1.22931 0.90364 0.81942 0.72861 1.90710 1.66158 1.36121 1.43857 1.18327 0.87513 0.98847 0.90530 1.28228 0.94348 0.93777 0.93775 1.81233 1.07752 1.08422 1.10574 1.21694 0.96662 0.89587 1.05397 1.22149 0.93295 1.00653 0.91678 1.62135 1.14755 1.12022 1.35490 1.21917 0.84713 0.99803 0.96371 0.90091 1.22495 1.01661 1.01117 0.99133 1.21551 0.99728 1.00186 0.91677 1.19480 0.97079 0.94183 0.93628 1.21246 1.29324 1.15767 0.89287 0.91463 1.25020 0.96126 0.97214 0.95189 1.69934 1.45750 1.41482 0.97722 0.86796 0.81477 0.83238 0.77952 1.20634 1.21786 1.18320 1.22203 0.93316 0.89975 1.02443 1.21835 0.97122 1.01241 0.94152 0.91763 0.91249 0.87740 0.89887 0.87454 0.94935 0.89240 0.92468 0.93525 0.91949 0.92577 0.92696 0.94993 0.97682 0.92966 0.87995 0.94643 0.89223 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.54 10.40 -39.26 -0.41 -3.95 16 3 C 0.48 5.37 6.53 36.01 0.24 5.60 16 4 O -0.48 -6.23 15.72 -18.74 -0.29 -6.53 16 5 C 0.05 0.57 0.66 -158.32 -0.11 0.46 16 6 C 0.22 2.60 11.51 -20.75 -0.24 2.37 16 7 N -0.41 -5.55 18.54 42.17 0.78 -4.77 16 8 C -0.09 -1.00 4.16 -26.65 -0.11 -1.11 16 9 C 0.05 0.57 4.94 -3.83 -0.02 0.56 16 10 N -0.52 -7.09 4.01 -226.70 -0.91 -8.00 16 11 C 0.08 1.16 2.31 -67.72 -0.16 1.00 16 12 H 0.08 1.18 7.97 -51.93 -0.41 0.77 16 13 C -0.19 -2.33 8.43 37.15 0.31 -2.02 16 14 C -0.09 -1.71 4.55 -26.73 -0.12 -1.84 16 15 C -0.01 -0.14 3.92 -27.89 -0.11 -0.25 16 16 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 17 H 0.07 2.03 7.99 -52.48 -0.42 1.61 16 18 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 19 N -0.91 -28.06 13.96 55.43 0.77 -27.29 16 20 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 24 C 0.05 0.60 4.31 -3.83 -0.02 0.59 16 25 C -0.10 -1.13 4.79 -26.64 -0.13 -1.25 16 26 H 0.06 0.43 8.13 -51.92 -0.42 0.01 16 27 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.11 1.20 8.04 -51.93 -0.42 0.78 16 31 H 0.03 0.37 6.08 -51.93 -0.32 0.06 16 32 H 0.09 0.96 8.01 -51.93 -0.42 0.54 16 33 H 0.06 0.72 6.45 -51.93 -0.34 0.39 16 34 H 0.05 0.55 6.85 -51.93 -0.36 0.20 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 37 H 0.05 1.00 6.29 -51.93 -0.33 0.67 16 38 H 0.03 0.74 6.78 -51.93 -0.35 0.38 16 39 H 0.00 0.11 7.57 -51.93 -0.39 -0.28 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.10 1.38 6.18 -51.93 -0.32 1.06 16 42 H 0.04 0.44 5.74 -51.93 -0.30 0.14 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -32.57 350.05 -6.18 -38.75 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -6.91 Total: -2.86 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 0.18 Total: -7.64 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.65 Total: -40.05 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.70 Total: -10.48 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.57 -6.18 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.039 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds