Wall clock time and date at job start Tue Mar 31 2020 07:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99682 * 2 1 4 4 O 1.20814 * 120.00229 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99488 * 180.02562 * 3 2 1 6 6 C 1.47199 * 109.57758 * 300.15987 * 5 3 2 7 7 N 3.71932 * 145.13293 * 87.63525 * 2 1 3 8 8 C 1.53120 * 109.52178 * 179.97438 * 5 3 2 9 9 C 1.53034 * 109.28178 * 182.43931 * 8 5 3 10 10 N 1.46850 * 109.52339 * 59.18181 * 9 8 5 11 11 C 1.46894 * 111.00179 * 174.16327 * 10 9 8 12 12 H 1.08998 * 109.47176 * 310.88385 * 11 10 9 13 13 C 1.52992 * 109.47478 * 70.88952 * 11 10 9 14 14 C 1.53002 * 109.46934 * 190.89046 * 11 10 9 15 15 C 1.52999 * 109.47498 * 64.02293 * 14 11 10 16 16 C 1.50692 * 109.47600 * 179.97438 * 15 14 11 17 17 H 1.08007 * 119.99693 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00394 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00096 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99920 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47265 * 90.00039 * 20 18 16 22 22 H 1.48502 * 109.47364 * 210.00480 * 20 18 16 23 23 H 1.48507 * 109.47157 * 330.00244 * 20 18 16 24 24 C 1.46846 * 111.19886 * 298.26089 * 10 9 8 25 25 C 1.53043 * 109.52354 * 61.73890 * 24 10 9 26 26 H 1.09008 * 109.46847 * 299.99708 * 1 2 3 27 27 H 1.08998 * 109.47530 * 59.99491 * 1 2 3 28 28 H 1.08998 * 109.46914 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.50272 * 62.49985 * 8 5 3 30 30 H 1.09000 * 109.50609 * 302.38858 * 8 5 3 31 31 H 1.09001 * 109.46378 * 299.17150 * 9 8 5 32 32 H 1.09002 * 109.45861 * 179.19535 * 9 8 5 33 33 H 1.09000 * 109.47162 * 60.00053 * 13 11 10 34 34 H 1.08998 * 109.47089 * 299.99765 * 13 11 10 35 35 H 1.09004 * 109.47321 * 179.97438 * 13 11 10 36 36 H 1.09008 * 109.47254 * 184.02183 * 14 11 10 37 37 H 1.09000 * 109.47488 * 304.01815 * 14 11 10 38 38 H 1.09007 * 109.47170 * 300.00538 * 15 14 11 39 39 H 1.09003 * 109.46702 * 59.99568 * 15 14 11 40 40 H 0.97005 * 119.99548 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.46926 * 181.75563 * 24 10 9 42 42 H 1.09000 * 109.46040 * 301.72482 * 24 10 9 43 43 H 1.08999 * 109.50147 * 180.88244 * 25 24 10 44 44 H 1.08995 * 109.53355 * 60.78399 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0958 0.6046 1.1982 7 7 4.5036 0.0877 2.1244 8 6 4.0018 2.7428 -0.0011 9 6 5.5291 2.8168 -0.0632 10 7 6.0038 2.1465 -1.2804 11 6 7.4535 2.3174 -1.4443 12 1 7.7114 3.3694 -1.3227 13 6 8.1875 1.4871 -0.3895 14 6 7.8677 1.8491 -2.8408 15 6 7.2117 2.7440 -3.8942 16 6 7.6201 2.2831 -5.2696 17 1 8.2811 1.4363 -5.3813 18 6 7.1500 2.9425 -6.3855 19 7 7.5060 2.5400 -7.5859 20 14 6.0063 4.4068 -6.1925 21 1 6.8087 5.6529 -6.1000 22 1 5.1015 4.4866 -7.3674 23 1 5.1992 4.2449 -4.9564 24 6 5.6383 0.7242 -1.2803 25 6 4.1142 0.5878 -1.2545 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.6508 3.2269 0.9103 30 1 3.5773 3.2481 -0.8687 31 1 5.9525 2.3234 0.8117 32 1 5.8417 3.8609 -0.0781 33 1 7.9297 0.4351 -0.5112 34 1 7.8925 1.8208 0.6054 35 1 9.2633 1.6136 -0.5114 36 1 8.9518 1.9088 -2.9374 37 1 7.5460 0.8182 -2.9886 38 1 6.1276 2.6844 -3.7976 39 1 7.5335 3.7749 -3.7464 40 1 7.1749 3.0037 -8.3710 41 1 6.0303 0.2483 -2.1791 42 1 6.0612 0.2407 -0.3997 43 1 3.8436 -0.4680 -1.2386 44 1 3.6911 1.0586 -2.1418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:40 Heat of formation + Delta-G solvation = -78.991198 kcal Electronic energy + Delta-G solvation = -24647.960900 eV Core-core repulsion = 21178.642235 eV Total energy + Delta-G solvation = -3469.318665 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.25619 -40.52389 -38.19413 -37.68659 -36.26802 -34.94702 -33.01051 -31.99306 -30.88210 -28.82208 -27.21069 -26.45838 -24.45627 -23.17168 -22.83255 -22.20791 -20.61992 -19.24871 -18.72971 -18.21662 -17.74178 -17.26820 -16.65603 -16.23751 -16.05311 -15.60944 -15.40641 -15.03464 -14.80525 -14.76728 -14.38759 -14.28569 -14.06026 -13.98307 -13.64826 -13.49127 -13.23787 -13.17272 -13.08531 -12.94618 -12.80853 -12.54146 -12.40536 -12.01899 -11.86621 -11.86067 -11.75824 -11.56571 -11.41686 -11.27597 -11.25141 -10.95129 -10.64252 -9.09420 -8.18989 -6.20737 0.75312 1.16504 1.43385 1.44120 1.46426 1.60642 1.79227 2.46726 2.48241 2.95373 3.18493 3.31469 3.44515 3.62215 3.95427 4.12021 4.15714 4.26718 4.27787 4.31987 4.34753 4.45928 4.50850 4.63508 4.64413 4.71713 4.75107 4.83966 4.92854 4.98127 5.03871 5.06170 5.09524 5.14352 5.19692 5.28992 5.43492 5.68637 5.79010 5.85571 6.17625 6.22306 6.27245 6.42486 6.45818 6.88945 7.43975 8.98110 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.004632 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.330663 B = 6043.981854 C = 7058.924202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.483 3.517 4 O -0.502 6.502 5 C 0.058 3.942 6 C 0.235 3.765 7 N -0.434 5.434 8 C -0.092 4.092 9 C 0.053 3.947 10 N -0.535 5.535 11 C 0.088 3.912 12 H 0.086 0.914 13 C -0.177 4.177 14 C -0.087 4.087 15 C 0.002 3.998 16 C -0.526 4.526 17 H 0.026 0.974 18 C 0.002 3.998 19 N -0.959 5.959 20 Si 0.948 3.052 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.236 1.236 24 C 0.050 3.950 25 C -0.101 4.101 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.035 0.965 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.035 0.965 39 H 0.008 0.992 40 H 0.262 0.738 41 H 0.086 0.914 42 H 0.039 0.961 43 H 0.104 0.896 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.552 -2.435 19.144 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.324 3.676 4 O -0.389 6.389 5 C 0.053 3.947 6 C -0.083 4.083 7 N -0.109 5.109 8 C -0.131 4.131 9 C -0.074 4.074 10 N -0.259 5.259 11 C -0.020 4.020 12 H 0.104 0.896 13 C -0.235 4.235 14 C -0.125 4.125 15 C -0.036 4.036 16 C -0.564 4.564 17 H 0.045 0.955 18 C -0.194 4.194 19 N -0.601 5.601 20 Si 0.772 3.228 21 H -0.198 1.198 22 H -0.217 1.217 23 H -0.159 1.159 24 C -0.078 4.078 25 C -0.140 4.140 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.150 0.850 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.122 0.878 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.440 -2.684 20.000 23.706 hybrid contribution -0.049 0.232 -0.311 0.391 sum -12.489 -2.452 19.689 23.445 Atomic orbital electron populations 1.23676 0.73808 1.06084 1.03124 1.86514 1.25714 1.31948 1.83161 1.22886 0.90321 0.82025 0.72374 1.90704 1.66530 1.36749 1.44900 1.18326 0.87540 0.98958 0.89896 1.28334 0.93510 0.93033 0.93469 1.81257 1.08796 1.09388 1.11502 1.21693 0.96039 0.89364 1.05963 1.22183 0.93700 1.00966 0.90599 1.62094 1.13995 1.12762 1.37088 1.21700 0.85839 1.00197 0.94263 0.89605 1.22385 1.01619 1.00591 0.98950 1.21405 0.98855 0.99163 0.93066 1.19374 0.97409 0.94897 0.91880 1.21662 1.28156 1.14381 0.92171 0.95532 1.25992 0.98090 1.00617 0.94668 1.70097 1.47710 1.43461 0.98807 0.85685 0.79339 0.79101 0.78706 1.19814 1.21741 1.15916 1.22160 0.94399 0.89435 1.01787 1.21814 0.95844 1.02262 0.94071 0.91548 0.91062 0.85025 0.88611 0.87693 0.94735 0.88205 0.92682 0.92280 0.91593 0.93399 0.93161 0.94655 0.97399 0.92888 0.89549 0.94341 0.87763 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.50 16 2 O -0.36 -6.47 10.40 -51.43 -0.54 -7.00 16 3 C 0.48 9.87 6.53 71.24 0.47 10.34 16 4 O -0.50 -12.01 15.72 22.00 0.35 -11.66 16 5 C 0.06 1.12 0.66 -54.65 -0.04 1.09 16 6 C 0.23 5.16 11.51 89.44 1.03 6.19 16 7 N -0.43 -11.18 18.54 20.01 0.37 -10.81 16 8 C -0.09 -1.72 4.16 30.65 0.13 -1.59 16 9 C 0.05 1.07 4.94 86.32 0.43 1.50 16 10 N -0.54 -13.47 4.01 -871.14 -3.49 -16.96 16 11 C 0.09 2.40 2.31 44.91 0.10 2.50 16 12 H 0.09 2.28 7.97 -2.39 -0.02 2.26 16 13 C -0.18 -4.09 8.43 71.98 0.61 -3.48 16 14 C -0.09 -3.14 4.55 30.59 0.14 -3.00 16 15 C 0.00 0.08 3.92 29.85 0.12 0.20 16 16 C -0.53 -29.96 9.66 25.60 0.25 -29.71 16 17 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 18 C 0.00 0.11 5.47 84.65 0.46 0.57 16 19 N -0.96 -60.63 13.96 21.45 0.30 -60.33 16 20 Si 0.95 44.28 27.47 68.60 1.88 46.17 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 24 C 0.05 1.17 4.31 86.33 0.37 1.54 16 25 C -0.10 -1.99 4.79 30.65 0.15 -1.84 16 26 H 0.07 0.77 8.13 -2.38 -0.02 0.75 16 27 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 28 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 2.07 8.04 -2.39 -0.02 2.05 16 31 H 0.03 0.69 6.08 -2.39 -0.01 0.68 16 32 H 0.10 1.82 8.01 -2.39 -0.02 1.80 16 33 H 0.05 1.30 6.45 -2.39 -0.02 1.28 16 34 H 0.06 1.24 6.85 -2.39 -0.02 1.22 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.05 1.84 6.29 -2.39 -0.02 1.82 16 38 H 0.04 1.56 6.78 -2.38 -0.02 1.55 16 39 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 40 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 41 H 0.09 2.29 6.18 -2.39 -0.01 2.28 16 42 H 0.04 0.88 5.74 -2.39 -0.01 0.86 16 43 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -70.40 350.05 5.21 -65.19 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.93 Total: 9.59 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.41 Total: -14.20 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -2.82 Total: -88.09 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.19 Total: -18.66 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.17 kcal Total: -70.40 5.21 -65.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.801 kcal (2) G-P(sol) polarization free energy of solvation -70.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds