Wall clock time and date at job start Tue Mar 31 2020 07:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47261 * 2 1 4 4 C 1.34452 * 119.31728 * 90.00324 * 3 2 1 5 5 O 1.21223 * 119.67208 * 359.50007 * 4 3 2 6 6 C 1.50646 * 120.65411 * 179.52748 * 4 3 2 7 7 N 1.47076 * 109.24935 * 28.83256 * 6 4 3 8 8 C 1.46894 * 111.00063 * 179.54692 * 7 6 4 9 9 C 1.53002 * 109.47121 * 294.99656 * 8 7 6 10 10 C 1.53005 * 109.47047 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46666 * 60.00239 * 10 9 8 12 12 C 1.50706 * 109.46556 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99705 * 120.00268 * 12 11 10 14 14 C 1.37871 * 120.00103 * 299.99981 * 12 11 10 15 15 N 1.31512 * 120.00526 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99802 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47370 * 60.00000 * 16 14 12 18 18 H 1.48504 * 109.47279 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47125 * 300.00090 * 16 14 12 20 20 C 1.52993 * 109.47292 * 299.99640 * 11 10 9 21 21 C 1.52997 * 109.47109 * 60.00349 * 20 11 10 22 22 C 1.47071 * 110.35783 * 303.04271 * 7 6 4 23 23 C 1.34446 * 119.32077 * 270.01765 * 3 2 1 24 24 O 1.21227 * 119.67189 * 0.45231 * 23 3 2 25 25 H 1.08997 * 109.47118 * 300.00508 * 1 2 3 26 26 H 1.09002 * 109.46612 * 59.99881 * 1 2 3 27 27 H 1.08996 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46883 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.46861 * 120.00610 * 2 1 3 30 30 H 1.09000 * 109.51052 * 268.89957 * 6 4 3 31 31 H 1.09002 * 109.51319 * 148.76309 * 6 4 3 32 32 H 1.09000 * 109.47378 * 54.99584 * 8 7 6 33 33 H 1.08992 * 109.47045 * 299.99921 * 9 8 7 34 34 H 1.08997 * 109.47113 * 60.00568 * 9 8 7 35 35 H 1.09004 * 109.47123 * 300.00297 * 10 9 8 36 36 H 1.09003 * 109.46810 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.47475 * 60.00407 * 11 10 9 38 38 H 0.96996 * 120.00451 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47378 * 300.00481 * 20 11 10 40 40 H 1.08997 * 109.47255 * 180.02562 * 20 11 10 41 41 H 1.09003 * 109.46948 * 179.97438 * 21 20 11 42 42 H 1.09000 * 109.47249 * 60.00187 * 21 20 11 43 43 H 1.09007 * 109.50647 * 176.88438 * 22 7 6 44 44 H 1.09000 * 109.51298 * 297.02346 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2379 2.0019 1.1723 5 8 2.0211 1.4161 2.2113 6 6 2.7500 3.4182 1.2075 7 7 2.2994 4.1268 0.0001 8 6 2.7696 5.5185 0.0001 9 6 2.1186 6.2767 1.1587 10 6 2.6089 7.7261 1.1591 11 6 2.2292 8.3932 -0.1644 12 6 2.7115 9.8210 -0.1637 13 1 3.4126 10.1545 -0.9146 14 6 2.2579 10.7014 0.7953 15 7 1.4046 10.2953 1.7099 16 14 2.8553 12.4714 0.7957 17 1 2.4863 13.1187 -0.4888 18 1 2.2236 13.2069 1.9206 19 1 4.3314 12.4956 0.9560 20 6 2.8801 7.6350 -1.3229 21 6 2.3899 6.1857 -1.3233 22 6 2.7501 3.4183 -1.2073 23 6 2.2375 2.0020 -1.1722 24 8 2.0212 1.4162 -2.2112 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8395 3.4106 1.2398 31 1 2.3625 3.9236 2.0921 32 1 3.8531 5.5360 0.1177 33 1 1.0352 6.2593 1.0411 34 1 2.3895 5.8018 2.1016 35 1 3.6924 7.7431 1.2769 36 1 2.1455 8.2661 1.9848 37 1 1.1457 8.3763 -0.2822 38 1 1.0851 10.9149 2.3844 39 1 3.9636 7.6521 -1.2051 40 1 2.6099 8.1106 -2.2658 41 1 2.8533 5.6457 -2.1490 42 1 1.3064 6.1686 -1.4412 43 1 2.3626 3.9236 -2.0920 44 1 3.8396 3.4107 -1.2396 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:44 Heat of formation + Delta-G solvation = -72.562530 kcal Electronic energy + Delta-G solvation = -24636.186482 eV Core-core repulsion = 21167.146585 eV Total energy + Delta-G solvation = -3469.039898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81682 -38.95949 -38.78849 -35.96031 -35.51208 -32.74169 -31.42555 -30.44691 -29.20948 -28.69778 -26.09292 -24.06008 -23.69848 -23.05381 -21.56649 -20.47801 -18.97682 -18.39540 -17.86146 -17.54380 -16.61128 -16.37615 -15.38650 -15.24736 -14.93079 -14.56780 -14.52155 -14.20327 -13.79139 -13.72466 -13.38323 -13.15409 -12.92670 -12.60232 -12.47026 -12.30558 -12.18504 -11.63509 -11.36305 -11.17299 -11.09049 -10.91220 -10.71552 -10.60426 -10.38536 -10.31693 -10.23604 -9.92337 -9.86161 -9.42156 -8.95870 -8.76243 -8.64284 -8.32028 -5.99869 -4.06193 1.35617 2.30429 2.50831 3.30243 3.35642 3.37836 3.55832 3.69799 4.42393 4.45036 4.65570 4.80206 4.88881 4.97622 5.05317 5.06628 5.21097 5.27195 5.31112 5.39391 5.41064 5.62325 5.67285 5.67603 5.93342 5.95348 6.03491 6.20841 6.27896 6.29490 6.49903 6.65861 6.67342 6.76484 6.82992 6.94100 7.08064 7.20197 7.21049 7.45297 7.57107 7.72526 7.98861 8.12201 8.44412 8.97763 9.58789 11.05607 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033302 B = 0.003386 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.580381 B = 8268.317855 C = 8730.864793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.566 5.566 4 C 0.534 3.466 5 O -0.499 6.499 6 C 0.026 3.974 7 N -0.526 5.526 8 C 0.090 3.910 9 C -0.109 4.109 10 C -0.108 4.108 11 C 0.048 3.952 12 C -0.515 4.515 13 H 0.053 0.947 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.107 4.107 21 C -0.114 4.114 22 C 0.024 3.976 23 C 0.533 3.467 24 O -0.500 6.500 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.033 0.967 36 H 0.095 0.905 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.133 0.867 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -16.856 -2.718 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.030 4.030 3 N -0.310 5.310 4 C 0.323 3.677 5 O -0.371 6.371 6 C -0.104 4.104 7 N -0.253 5.253 8 C -0.016 4.016 9 C -0.147 4.147 10 C -0.147 4.147 11 C 0.030 3.970 12 C -0.553 4.553 13 H 0.071 0.929 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.145 4.145 21 C -0.151 4.151 22 C -0.107 4.107 23 C 0.323 3.677 24 O -0.372 6.372 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.150 0.850 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.114 0.886 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.150 0.850 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.711 -17.413 -2.556 17.682 hybrid contribution 1.178 0.950 0.086 1.516 sum 2.889 -16.463 -2.470 16.896 Atomic orbital electron populations 1.22034 0.94467 1.02811 1.02854 1.21717 0.95898 0.81052 1.04352 1.46884 1.60130 1.15995 1.07961 1.21014 0.75344 0.88729 0.82587 1.90732 1.47566 1.66800 1.31967 1.22615 1.00491 0.89680 0.97643 1.62744 1.59586 1.03662 0.99356 1.21916 0.97324 0.83586 0.98820 1.21737 1.00901 0.97693 0.94358 1.21632 0.98687 0.90906 1.03439 1.18660 0.95972 0.93052 0.89343 1.21185 1.26427 0.94825 1.12868 0.92892 1.24953 0.94983 0.98380 0.95603 1.69847 1.31704 1.35038 1.16278 0.86723 0.78946 0.85173 0.77512 1.20356 1.21354 1.20389 1.21617 0.99711 0.92451 1.00714 1.21745 1.01897 0.97450 0.94041 1.22660 1.00500 0.89695 0.97812 1.21031 0.75325 0.88738 0.82590 1.90728 1.47699 1.66821 1.31970 0.91964 0.92001 0.90967 0.88909 0.88897 0.90058 0.84999 0.93464 0.91615 0.93729 0.94846 0.88646 0.95490 0.92984 0.93428 0.93013 0.93309 0.91294 0.84968 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.23 37.16 0.38 -1.23 16 2 C 0.09 0.93 5.74 -4.04 -0.02 0.91 16 3 N -0.57 -6.62 2.54 -115.56 -0.29 -6.92 16 4 C 0.53 6.56 7.61 -11.16 -0.08 6.47 16 5 O -0.50 -7.26 16.56 5.61 0.09 -7.17 16 6 C 0.03 0.29 5.32 -4.91 -0.03 0.26 16 7 N -0.53 -6.41 4.63 -229.28 -1.06 -7.47 16 8 C 0.09 1.26 1.94 -67.71 -0.13 1.13 16 9 C -0.11 -1.83 5.11 -26.73 -0.14 -1.97 16 10 C -0.11 -2.30 4.98 -26.73 -0.13 -2.43 16 11 C 0.05 1.10 2.10 -91.77 -0.19 0.91 16 12 C -0.51 -13.44 8.56 -34.44 -0.29 -13.74 16 13 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.46 11.32 55.43 0.63 -23.83 16 16 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.11 -1.98 5.14 -26.74 -0.14 -2.12 16 21 C -0.11 -1.70 4.69 -26.73 -0.13 -1.83 16 22 C 0.02 0.25 5.00 -4.90 -0.02 0.23 16 23 C 0.53 6.44 7.61 -11.16 -0.08 6.36 16 24 O -0.50 -7.12 16.56 5.60 0.09 -7.03 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.90 7.36 -51.93 -0.38 0.52 16 29 H 0.09 0.91 7.36 -51.93 -0.38 0.52 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.13 1.51 6.42 -51.93 -0.33 1.17 16 32 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.04 0.67 6.51 -51.93 -0.34 0.34 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 2.35 6.07 -51.93 -0.32 2.03 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.61 6.31 -51.93 -0.33 0.28 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.13 1.41 6.18 -51.92 -0.32 1.09 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -28.97 341.78 -8.54 -37.51 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.01 Total: -0.39 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -1.11 Total: -5.49 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.73 Total: -38.22 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.19 Total: -14.19 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.97 -8.54 -37.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.056 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds