Wall clock time and date at job start Tue Mar 31 2020 07:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47261 * 2 1 4 4 C 1.34452 * 119.31728 * 90.00324 * 3 2 1 5 5 O 1.21223 * 119.67208 * 359.50007 * 4 3 2 6 6 C 1.50646 * 120.65411 * 179.52748 * 4 3 2 7 7 N 1.47076 * 109.24935 * 28.83256 * 6 4 3 8 8 C 1.46894 * 111.00063 * 179.54692 * 7 6 4 9 9 C 1.53002 * 109.47121 * 294.99656 * 8 7 6 10 10 C 1.53005 * 109.47047 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46666 * 60.00239 * 10 9 8 12 12 C 1.50706 * 109.46556 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99705 * 120.00268 * 12 11 10 14 14 C 1.37871 * 120.00103 * 299.99981 * 12 11 10 15 15 N 1.31512 * 120.00526 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99802 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47370 * 60.00000 * 16 14 12 18 18 H 1.48504 * 109.47279 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47125 * 300.00090 * 16 14 12 20 20 C 1.52993 * 109.47292 * 299.99640 * 11 10 9 21 21 C 1.52997 * 109.47109 * 60.00349 * 20 11 10 22 22 C 1.47071 * 110.35783 * 303.04271 * 7 6 4 23 23 C 1.34446 * 119.32077 * 270.01765 * 3 2 1 24 24 O 1.21227 * 119.67189 * 0.45231 * 23 3 2 25 25 H 1.08997 * 109.47118 * 300.00508 * 1 2 3 26 26 H 1.09002 * 109.46612 * 59.99881 * 1 2 3 27 27 H 1.08996 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46883 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.46861 * 120.00610 * 2 1 3 30 30 H 1.09000 * 109.51052 * 268.89957 * 6 4 3 31 31 H 1.09002 * 109.51319 * 148.76309 * 6 4 3 32 32 H 1.09000 * 109.47378 * 54.99584 * 8 7 6 33 33 H 1.08992 * 109.47045 * 299.99921 * 9 8 7 34 34 H 1.08997 * 109.47113 * 60.00568 * 9 8 7 35 35 H 1.09004 * 109.47123 * 300.00297 * 10 9 8 36 36 H 1.09003 * 109.46810 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.47475 * 60.00407 * 11 10 9 38 38 H 0.96996 * 120.00451 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47378 * 300.00481 * 20 11 10 40 40 H 1.08997 * 109.47255 * 180.02562 * 20 11 10 41 41 H 1.09003 * 109.46948 * 179.97438 * 21 20 11 42 42 H 1.09000 * 109.47249 * 60.00187 * 21 20 11 43 43 H 1.09007 * 109.50647 * 176.88438 * 22 7 6 44 44 H 1.09000 * 109.51298 * 297.02346 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2379 2.0019 1.1723 5 8 2.0211 1.4161 2.2113 6 6 2.7500 3.4182 1.2075 7 7 2.2994 4.1268 0.0001 8 6 2.7696 5.5185 0.0001 9 6 2.1186 6.2767 1.1587 10 6 2.6089 7.7261 1.1591 11 6 2.2292 8.3932 -0.1644 12 6 2.7115 9.8210 -0.1637 13 1 3.4126 10.1545 -0.9146 14 6 2.2579 10.7014 0.7953 15 7 1.4046 10.2953 1.7099 16 14 2.8553 12.4714 0.7957 17 1 2.4863 13.1187 -0.4888 18 1 2.2236 13.2069 1.9206 19 1 4.3314 12.4956 0.9560 20 6 2.8801 7.6350 -1.3229 21 6 2.3899 6.1857 -1.3233 22 6 2.7501 3.4183 -1.2073 23 6 2.2375 2.0020 -1.1722 24 8 2.0212 1.4162 -2.2112 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8395 3.4106 1.2398 31 1 2.3625 3.9236 2.0921 32 1 3.8531 5.5360 0.1177 33 1 1.0352 6.2593 1.0411 34 1 2.3895 5.8018 2.1016 35 1 3.6924 7.7431 1.2769 36 1 2.1455 8.2661 1.9848 37 1 1.1457 8.3763 -0.2822 38 1 1.0851 10.9149 2.3844 39 1 3.9636 7.6521 -1.2051 40 1 2.6099 8.1106 -2.2658 41 1 2.8533 5.6457 -2.1490 42 1 1.3064 6.1686 -1.4412 43 1 2.3626 3.9236 -2.0920 44 1 3.8396 3.4107 -1.2396 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:43 Heat of formation + Delta-G solvation = -90.491270 kcal Electronic energy + Delta-G solvation = -24636.963931 eV Core-core repulsion = 21167.146585 eV Total energy + Delta-G solvation = -3469.817346 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.76045 -40.01210 -39.95522 -37.29080 -36.48730 -34.48648 -32.50054 -31.74290 -30.59217 -29.78837 -27.44777 -25.56637 -24.68245 -23.97979 -22.96225 -21.88223 -20.41385 -19.34914 -18.83770 -18.51436 -18.27048 -17.58796 -16.66628 -16.36753 -16.17462 -15.90940 -15.49323 -15.06954 -15.03804 -14.86176 -14.67665 -14.41003 -14.26126 -13.88995 -13.59479 -13.32012 -13.24257 -13.15088 -12.85435 -12.66573 -12.40829 -12.29209 -12.14739 -12.11461 -11.80407 -11.65726 -11.38394 -11.32671 -11.11280 -10.86257 -10.67581 -10.40876 -10.29772 -9.59633 -8.02194 -6.15439 0.40860 1.40830 1.44471 1.44909 1.52122 1.60270 2.46879 2.57710 2.80729 3.24588 3.55189 3.73274 3.98426 3.99539 4.10758 4.13243 4.18187 4.30640 4.42574 4.43675 4.45605 4.49314 4.63711 4.74646 4.80675 4.84100 4.89677 4.91036 4.96843 5.03434 5.14447 5.24460 5.33788 5.47376 5.58030 5.59086 5.68091 5.74382 5.85900 5.90664 6.13060 6.28033 6.31428 6.48585 6.64150 6.98639 7.52622 9.00905 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033302 B = 0.003386 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.580381 B = 8268.317855 C = 8730.864793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.086 3.914 3 N -0.568 5.568 4 C 0.538 3.462 5 O -0.525 6.525 6 C 0.028 3.972 7 N -0.534 5.534 8 C 0.103 3.897 9 C -0.100 4.100 10 C -0.100 4.100 11 C 0.042 3.958 12 C -0.533 4.533 13 H 0.051 0.949 14 C 0.013 3.987 15 N -0.916 5.916 16 Si 0.946 3.054 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.271 1.271 20 C -0.100 4.100 21 C -0.107 4.107 22 C 0.026 3.974 23 C 0.537 3.463 24 O -0.523 6.523 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.128 0.872 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.056 0.944 37 H -0.010 1.010 38 H 0.258 0.742 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.137 0.863 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 -17.988 -3.496 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.034 4.034 3 N -0.311 5.311 4 C 0.329 3.671 5 O -0.398 6.398 6 C -0.102 4.102 7 N -0.262 5.262 8 C -0.003 4.003 9 C -0.138 4.138 10 C -0.139 4.139 11 C 0.024 3.976 12 C -0.571 4.571 13 H 0.069 0.931 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.772 3.228 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.196 1.196 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.104 4.104 23 C 0.328 3.672 24 O -0.397 6.397 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.146 0.854 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.008 0.992 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.155 0.845 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.282 -18.551 -3.347 19.134 hybrid contribution 0.654 1.290 0.321 1.481 sum 3.936 -17.262 -3.026 17.961 Atomic orbital electron populations 1.21991 0.94245 1.03923 1.01453 1.21849 0.96080 0.80614 1.04894 1.46962 1.59753 1.16515 1.07842 1.21192 0.74640 0.89027 0.82253 1.90727 1.48793 1.67504 1.32820 1.22648 1.02160 0.88532 0.96891 1.62552 1.60347 1.02869 1.00430 1.21618 0.97849 0.84209 0.96662 1.21548 0.99843 0.95422 0.97020 1.21382 0.98196 0.93352 1.00925 1.18659 0.93957 0.92741 0.92248 1.21642 1.26175 0.96791 1.12529 0.93115 1.25681 0.95314 1.02045 0.95507 1.70003 1.32758 1.35986 1.16796 0.85806 0.78694 0.80896 0.77397 1.19990 1.21362 1.19621 1.21463 0.99665 0.94317 0.98332 1.21656 1.01372 0.95411 0.96016 1.22729 1.02289 0.88402 0.96956 1.21251 0.74639 0.89124 0.82170 1.90727 1.48784 1.67499 1.32674 0.93360 0.93190 0.88731 0.88241 0.88423 0.87147 0.85387 0.91653 0.93466 0.91787 0.94840 0.92577 0.99202 0.93285 0.92714 0.93501 0.89695 0.92500 0.84541 0.87037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 10.23 71.98 0.74 -2.19 16 2 C 0.09 1.63 5.74 86.38 0.50 2.13 16 3 N -0.57 -12.15 2.54 -756.72 -1.93 -14.08 16 4 C 0.54 12.12 7.61 87.69 0.67 12.79 16 5 O -0.52 -14.56 16.56 -2.85 -0.05 -14.61 16 6 C 0.03 0.53 5.32 85.51 0.46 0.98 16 7 N -0.53 -11.39 4.63 -879.31 -4.07 -15.46 16 8 C 0.10 2.61 1.94 44.92 0.09 2.69 16 9 C -0.10 -3.28 5.11 30.60 0.16 -3.13 16 10 C -0.10 -4.29 4.98 30.60 0.15 -4.13 16 11 C 0.04 1.97 2.10 -11.54 -0.02 1.95 16 12 C -0.53 -28.25 8.56 25.60 0.22 -28.03 16 13 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 14 C 0.01 0.70 5.30 84.65 0.45 1.15 16 15 N -0.92 -51.86 11.32 21.44 0.24 -51.62 16 16 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C -0.10 -3.58 5.14 30.59 0.16 -3.42 16 21 C -0.11 -2.93 4.69 30.59 0.14 -2.79 16 22 C 0.03 0.46 5.00 85.51 0.43 0.89 16 23 C 0.54 11.62 7.61 87.69 0.67 12.28 16 24 O -0.52 -13.81 16.56 -2.87 -0.05 -13.86 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.10 1.76 7.36 -2.39 -0.02 1.74 16 29 H 0.10 1.77 7.36 -2.39 -0.02 1.75 16 30 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.13 2.62 6.42 -2.39 -0.02 2.60 16 32 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.84 6.51 -2.39 -0.02 1.82 16 35 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.06 2.85 6.07 -2.39 -0.01 2.84 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.26 14.08 8.31 -92.71 -0.77 13.30 16 39 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.77 6.31 -2.39 -0.02 1.75 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.14 2.37 6.18 -2.38 -0.01 2.36 16 44 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -64.27 341.78 1.95 -62.32 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.98 Total: 11.38 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 4.79 Total: -8.83 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -5.75 Total: -81.16 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.09 Total: -28.47 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -64.27 1.95 -62.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.176 kcal (2) G-P(sol) polarization free energy of solvation -64.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds