Wall clock time and date at job start Tue Mar 31 2020 07:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.46921 * 2 1 4 4 C 1.50705 * 109.47379 * 119.99861 * 2 1 3 5 5 O 1.21279 * 119.99526 * 119.99944 * 4 2 1 6 6 N 1.34774 * 120.00106 * 300.00524 * 4 2 1 7 7 C 1.46496 * 120.00121 * 180.02562 * 6 4 2 8 8 H 1.09002 * 109.41243 * 34.99549 * 7 6 4 9 9 C 1.52958 * 109.41516 * 154.85502 * 7 6 4 10 10 C 1.53235 * 109.40153 * 183.63336 * 9 7 6 11 11 C 1.51270 * 108.53513 * 305.36928 * 10 9 7 12 12 C 1.37874 * 120.85166 * 231.32689 * 11 10 9 13 13 N 1.31519 * 119.99757 * 349.19302 * 12 11 10 14 14 Si 1.86798 * 120.00105 * 169.19258 * 12 11 10 15 15 H 1.48499 * 109.47007 * 354.66084 * 14 12 11 16 16 H 1.48501 * 109.47186 * 114.66005 * 14 12 11 17 17 H 1.48503 * 109.47077 * 234.65858 * 14 12 11 18 18 C 1.51266 * 118.29859 * 51.35478 * 11 10 9 19 19 C 1.52964 * 109.41230 * 275.13832 * 7 6 4 20 20 N 1.46498 * 109.47244 * 240.00050 * 2 1 3 21 21 C 1.46766 * 124.34714 * 119.99803 * 20 2 1 22 22 C 1.54487 * 105.47273 * 197.01773 * 21 20 2 23 23 C 1.54633 * 101.76213 * 334.58291 * 22 21 20 24 24 C 1.34422 * 124.35167 * 299.69781 * 20 2 1 25 25 O 1.21280 * 124.93869 * 359.57676 * 24 20 2 26 26 H 1.09001 * 109.46901 * 299.99365 * 1 2 3 27 27 H 1.08997 * 109.47507 * 60.00088 * 1 2 3 28 28 H 1.09000 * 109.46921 * 179.97438 * 1 2 3 29 29 H 0.97004 * 119.99910 * 359.97438 * 6 4 2 30 30 H 1.08994 * 109.48252 * 303.60777 * 9 7 6 31 31 H 1.08995 * 109.47881 * 63.65508 * 9 7 6 32 32 H 1.08992 * 109.62777 * 65.09160 * 10 9 7 33 33 H 1.08997 * 109.62134 * 185.46694 * 10 9 7 34 34 H 0.97001 * 119.99975 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.62721 * 68.36567 * 18 11 10 36 36 H 1.08998 * 109.62493 * 188.74267 * 18 11 10 37 37 H 1.08993 * 109.48302 * 296.34913 * 19 7 6 38 38 H 1.09002 * 109.48124 * 56.38469 * 19 7 6 39 39 H 1.08994 * 110.24535 * 316.01452 * 21 20 2 40 40 H 1.08996 * 110.24836 * 78.02096 * 21 20 2 41 41 H 1.08998 * 110.96605 * 92.70099 * 22 21 20 42 42 H 1.09001 * 110.96820 * 216.43246 * 22 21 20 43 43 H 1.09003 * 110.48392 * 143.47395 * 23 22 21 44 44 H 1.08999 * 110.48696 * 266.11856 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9402 3.6507 8 1 3.1949 -1.3316 3.4602 9 6 2.2496 0.0448 4.8197 10 6 2.8460 -0.6535 6.0465 11 6 2.0448 -1.9063 6.3236 12 6 1.5404 -2.1592 7.5815 13 7 1.9252 -1.4266 8.6038 14 14 0.3106 -3.5424 7.8340 15 1 -0.0542 -4.1266 6.5184 16 1 0.9161 -4.5929 8.6913 17 1 -0.9079 -3.0072 8.4930 18 6 1.8118 -2.8749 5.1853 19 6 1.2533 -2.0960 3.9915 20 7 2.0183 -0.6906 -1.1961 21 6 2.8655 -0.0711 -2.2221 22 6 2.7608 -0.9949 -3.4559 23 6 2.4039 -2.3513 -2.8048 24 6 1.7528 -1.9746 -1.4922 25 8 1.0859 -2.7216 -0.8079 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.1492 0.5389 2.5436 30 1 2.8721 0.8973 4.5483 31 1 1.2419 0.3893 5.0516 32 1 3.8842 -0.9191 5.8478 33 1 2.7971 0.0136 6.9071 34 1 1.5706 -1.6048 9.4889 35 1 2.7544 -3.3463 4.9069 36 1 1.0980 -3.6383 5.4945 37 1 0.2692 -1.7008 4.2430 38 1 1.1692 -2.7618 3.1325 39 1 2.4965 0.9254 -2.4646 40 1 3.8981 -0.0182 -1.8771 41 1 1.9675 -0.6628 -4.1255 42 1 3.7138 -1.0528 -3.9818 43 1 1.7073 -2.9050 -3.4343 44 1 3.3054 -2.9370 -2.6248 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181313652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:42 Heat of formation + Delta-G solvation = -80.466337 kcal Electronic energy + Delta-G solvation = -24654.299445 eV Core-core repulsion = 21184.916813 eV Total energy + Delta-G solvation = -3469.382632 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76182 -39.08834 -36.70808 -36.30365 -34.12542 -33.56171 -31.53045 -29.80413 -29.55205 -27.68280 -27.16959 -24.56022 -22.34054 -22.10063 -21.47264 -20.49371 -19.58579 -18.84177 -17.34238 -16.92483 -16.23563 -15.76527 -15.49071 -15.17882 -14.51500 -14.38330 -13.98002 -13.75680 -13.70886 -13.24955 -13.06492 -12.90512 -12.70192 -12.39070 -12.28191 -12.22337 -12.03505 -11.93035 -11.66690 -11.57570 -11.21355 -10.95074 -10.78258 -10.70516 -10.11163 -9.97183 -9.68277 -9.58033 -9.35844 -9.04274 -8.84771 -8.62598 -8.39054 -8.21550 -6.09097 -3.97172 2.63897 2.80225 2.96674 3.29583 3.39667 3.42717 3.64375 4.21515 4.24892 4.42520 4.54692 4.77809 4.83582 4.90304 4.97834 5.17589 5.19193 5.34429 5.41856 5.42972 5.55069 5.60050 5.72004 5.78351 5.94910 6.02722 6.24601 6.40771 6.52958 6.54537 6.76647 6.83267 6.95041 7.02879 7.09711 7.21495 7.32733 7.51054 7.65223 7.75955 7.80000 7.96693 8.26471 8.41391 8.63123 8.98484 9.57980 11.00441 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030080 B = 0.003656 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.636248 B = 7655.765630 C = 8019.072046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.110 0.890 4 C 0.498 3.502 5 O -0.523 6.523 6 N -0.723 5.723 7 C 0.157 3.843 8 H 0.076 0.924 9 C -0.114 4.114 10 C 0.015 3.985 11 C -0.487 4.487 12 C 0.076 3.924 13 N -0.888 5.888 14 Si 0.877 3.123 15 H -0.255 1.255 16 H -0.283 1.283 17 H -0.286 1.286 18 C -0.023 4.023 19 C -0.112 4.112 20 N -0.610 5.610 21 C 0.104 3.896 22 C -0.130 4.130 23 C -0.155 4.155 24 C 0.524 3.476 25 O -0.512 6.512 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.392 0.608 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.006 0.994 33 H 0.057 0.943 34 H 0.263 0.737 35 H 0.018 0.982 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 7.483 -22.900 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.127 0.873 4 C 0.281 3.719 5 O -0.398 6.398 6 N -0.374 5.374 7 C 0.054 3.946 8 H 0.094 0.906 9 C -0.153 4.153 10 C -0.023 4.023 11 C -0.506 4.506 12 C -0.126 4.126 13 N -0.526 5.526 14 Si 0.706 3.294 15 H -0.180 1.180 16 H -0.209 1.209 17 H -0.213 1.213 18 C -0.061 4.061 19 C -0.151 4.151 20 N -0.345 5.345 21 C -0.019 4.019 22 C -0.167 4.167 23 C -0.195 4.195 24 C 0.311 3.689 25 O -0.386 6.386 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.225 0.775 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.527 6.412 -22.344 23.252 hybrid contribution -0.875 -0.155 0.331 0.948 sum -1.401 6.257 -22.014 22.928 Atomic orbital electron populations 1.22108 0.92557 1.04557 1.02751 1.20819 0.95827 0.96367 0.83808 0.87264 1.20681 0.81090 0.85259 0.84836 1.90705 1.37470 1.25314 1.86342 1.46356 1.53324 1.31688 1.05995 1.21026 0.98094 0.93243 0.82226 0.90614 1.21945 1.00648 0.96181 0.96483 1.19305 0.94403 0.95760 0.92789 1.20048 1.32588 1.04984 0.92979 1.24834 0.96278 0.96186 0.95305 1.69902 1.42718 1.40389 0.99573 0.86762 0.81768 0.82554 0.78365 1.17993 1.20920 1.21252 1.19898 0.96738 0.95952 0.93521 1.21858 0.98233 0.96552 0.98477 1.47963 1.51965 1.12707 1.21897 1.22075 0.95175 0.97141 0.87462 1.22565 1.03327 0.94191 0.96654 1.22319 1.03001 0.98683 0.95485 1.20717 0.79845 0.81203 0.87104 1.90739 1.39220 1.53625 1.54970 0.90730 0.91517 0.90449 0.77490 0.94663 0.92789 0.97576 0.92479 0.92719 0.96380 0.94062 0.93269 0.94419 0.90416 0.91130 0.90045 0.89228 0.88280 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.10 37.15 0.34 -1.41 16 2 C 0.14 1.66 3.28 -69.08 -0.23 1.44 16 3 H 0.11 0.93 8.07 -51.93 -0.42 0.51 16 4 C 0.50 8.44 6.81 -10.98 -0.07 8.36 16 5 O -0.52 -11.33 14.50 -10.08 -0.15 -11.48 16 6 N -0.72 -11.79 4.97 -53.85 -0.27 -12.05 16 7 C 0.16 3.20 2.35 -67.97 -0.16 3.04 16 8 H 0.08 1.73 7.57 -51.93 -0.39 1.34 16 9 C -0.11 -2.34 5.40 -26.63 -0.14 -2.49 16 10 C 0.02 0.38 5.92 -27.48 -0.16 0.22 16 11 C -0.49 -13.09 5.48 -98.92 -0.54 -13.63 16 12 C 0.08 2.12 5.44 -17.82 -0.10 2.02 16 13 N -0.89 -25.73 12.83 55.43 0.71 -25.02 16 14 Si 0.88 21.35 27.95 -169.99 -4.75 16.59 16 15 H -0.25 -6.05 5.57 56.52 0.32 -5.74 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 18 C -0.02 -0.58 5.65 -27.56 -0.16 -0.73 16 19 C -0.11 -2.53 5.49 -26.70 -0.15 -2.68 16 20 N -0.61 -7.26 2.63 -166.16 -0.44 -7.69 16 21 C 0.10 0.77 7.30 -3.12 -0.02 0.75 16 22 C -0.13 -0.75 7.18 -25.09 -0.18 -0.93 16 23 C -0.15 -1.43 6.86 -26.74 -0.18 -1.62 16 24 C 0.52 7.57 6.71 -10.86 -0.07 7.50 16 25 O -0.51 -9.96 15.37 -10.08 -0.15 -10.12 16 26 H 0.07 0.69 7.56 -51.93 -0.39 0.30 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.11 6.82 -51.93 -0.35 0.75 16 29 H 0.39 5.04 8.02 -40.82 -0.33 4.72 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.06 1.53 7.20 -51.93 -0.37 1.16 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.04 1.03 4.35 -51.93 -0.23 0.81 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -35.39 344.76 -8.88 -44.27 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.20 Total: 0.47 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.83 Total: -0.16 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.01 Total: -44.77 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.30 Total: -21.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.75 Total: 16.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.39 -8.88 -44.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181313652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.195 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds