Wall clock time and date at job start Tue Mar 31 2020 07:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.46921 * 2 1 4 4 C 1.50705 * 109.47379 * 119.99861 * 2 1 3 5 5 O 1.21279 * 119.99526 * 119.99944 * 4 2 1 6 6 N 1.34774 * 120.00106 * 300.00524 * 4 2 1 7 7 C 1.46496 * 120.00121 * 180.02562 * 6 4 2 8 8 H 1.09002 * 109.41243 * 34.99549 * 7 6 4 9 9 C 1.52958 * 109.41516 * 154.85502 * 7 6 4 10 10 C 1.53235 * 109.40153 * 183.63336 * 9 7 6 11 11 C 1.51270 * 108.53513 * 305.36928 * 10 9 7 12 12 C 1.37874 * 120.85166 * 231.32689 * 11 10 9 13 13 N 1.31519 * 119.99757 * 349.19302 * 12 11 10 14 14 Si 1.86798 * 120.00105 * 169.19258 * 12 11 10 15 15 H 1.48499 * 109.47007 * 354.66084 * 14 12 11 16 16 H 1.48501 * 109.47186 * 114.66005 * 14 12 11 17 17 H 1.48503 * 109.47077 * 234.65858 * 14 12 11 18 18 C 1.51266 * 118.29859 * 51.35478 * 11 10 9 19 19 C 1.52964 * 109.41230 * 275.13832 * 7 6 4 20 20 N 1.46498 * 109.47244 * 240.00050 * 2 1 3 21 21 C 1.46766 * 124.34714 * 119.99803 * 20 2 1 22 22 C 1.54487 * 105.47273 * 197.01773 * 21 20 2 23 23 C 1.54633 * 101.76213 * 334.58291 * 22 21 20 24 24 C 1.34422 * 124.35167 * 299.69781 * 20 2 1 25 25 O 1.21280 * 124.93869 * 359.57676 * 24 20 2 26 26 H 1.09001 * 109.46901 * 299.99365 * 1 2 3 27 27 H 1.08997 * 109.47507 * 60.00088 * 1 2 3 28 28 H 1.09000 * 109.46921 * 179.97438 * 1 2 3 29 29 H 0.97004 * 119.99910 * 359.97438 * 6 4 2 30 30 H 1.08994 * 109.48252 * 303.60777 * 9 7 6 31 31 H 1.08995 * 109.47881 * 63.65508 * 9 7 6 32 32 H 1.08992 * 109.62777 * 65.09160 * 10 9 7 33 33 H 1.08997 * 109.62134 * 185.46694 * 10 9 7 34 34 H 0.97001 * 119.99975 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.62721 * 68.36567 * 18 11 10 36 36 H 1.08998 * 109.62493 * 188.74267 * 18 11 10 37 37 H 1.08993 * 109.48302 * 296.34913 * 19 7 6 38 38 H 1.09002 * 109.48124 * 56.38469 * 19 7 6 39 39 H 1.08994 * 110.24535 * 316.01452 * 21 20 2 40 40 H 1.08996 * 110.24836 * 78.02096 * 21 20 2 41 41 H 1.08998 * 110.96605 * 92.70099 * 22 21 20 42 42 H 1.09001 * 110.96820 * 216.43246 * 22 21 20 43 43 H 1.09003 * 110.48392 * 143.47395 * 23 22 21 44 44 H 1.08999 * 110.48696 * 266.11856 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9402 3.6507 8 1 3.1949 -1.3316 3.4602 9 6 2.2496 0.0448 4.8197 10 6 2.8460 -0.6535 6.0465 11 6 2.0448 -1.9063 6.3236 12 6 1.5404 -2.1592 7.5815 13 7 1.9252 -1.4266 8.6038 14 14 0.3106 -3.5424 7.8340 15 1 -0.0542 -4.1266 6.5184 16 1 0.9161 -4.5929 8.6913 17 1 -0.9079 -3.0072 8.4930 18 6 1.8118 -2.8749 5.1853 19 6 1.2533 -2.0960 3.9915 20 7 2.0183 -0.6906 -1.1961 21 6 2.8655 -0.0711 -2.2221 22 6 2.7608 -0.9949 -3.4559 23 6 2.4039 -2.3513 -2.8048 24 6 1.7528 -1.9746 -1.4922 25 8 1.0859 -2.7216 -0.8079 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.1492 0.5389 2.5436 30 1 2.8721 0.8973 4.5483 31 1 1.2419 0.3893 5.0516 32 1 3.8842 -0.9191 5.8478 33 1 2.7971 0.0136 6.9071 34 1 1.5706 -1.6048 9.4889 35 1 2.7544 -3.3463 4.9069 36 1 1.0980 -3.6383 5.4945 37 1 0.2692 -1.7008 4.2430 38 1 1.1692 -2.7618 3.1325 39 1 2.4965 0.9254 -2.4646 40 1 3.8981 -0.0182 -1.8771 41 1 1.9675 -0.6628 -4.1255 42 1 3.7138 -1.0528 -3.9818 43 1 1.7073 -2.9050 -3.4343 44 1 3.3054 -2.9370 -2.6248 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181313652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:41 Heat of formation + Delta-G solvation = -104.677831 kcal Electronic energy + Delta-G solvation = -24655.349334 eV Core-core repulsion = 21184.916813 eV Total energy + Delta-G solvation = -3470.432521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.79238 -40.41476 -38.43301 -37.34100 -35.46754 -34.93235 -33.33927 -31.54877 -30.63594 -28.95769 -28.39803 -25.67120 -24.03723 -23.35935 -22.72815 -21.85416 -21.34226 -20.04625 -18.57252 -17.93076 -17.85021 -16.95749 -16.69959 -16.47612 -16.34863 -15.71867 -15.24466 -14.93672 -14.76746 -14.59104 -14.55896 -14.25495 -14.03798 -13.93321 -13.65848 -13.51532 -13.23037 -12.99226 -12.85681 -12.81811 -12.71083 -12.57224 -12.24679 -11.98248 -11.85562 -11.81238 -11.31656 -11.12941 -10.80940 -10.71634 -10.65477 -10.50043 -9.89260 -9.66645 -8.21553 -6.13716 1.34481 1.40078 1.48640 1.59013 1.67413 1.94057 2.38548 2.40659 3.05631 3.46669 3.66479 3.76154 3.99646 4.00659 4.04796 4.09048 4.19094 4.29065 4.45236 4.60722 4.66079 4.69674 4.74041 4.77318 4.82197 4.87425 4.93585 5.04049 5.11025 5.11598 5.17289 5.20987 5.23375 5.25921 5.50037 5.55028 5.58670 5.67640 5.74425 5.78740 6.20298 6.32486 6.63883 6.89903 7.24383 7.36547 7.44048 8.89000 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030080 B = 0.003656 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.636248 B = 7655.765630 C = 8019.072046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 H 0.158 0.842 4 C 0.490 3.510 5 O -0.577 6.577 6 N -0.711 5.711 7 C 0.170 3.830 8 H 0.047 0.953 9 C -0.098 4.098 10 C 0.011 3.989 11 C -0.500 4.500 12 C 0.029 3.971 13 N -0.923 5.923 14 Si 0.929 3.071 15 H -0.248 1.248 16 H -0.283 1.283 17 H -0.280 1.280 18 C -0.024 4.024 19 C -0.103 4.103 20 N -0.611 5.611 21 C 0.096 3.904 22 C -0.114 4.114 23 C -0.154 4.154 24 C 0.502 3.498 25 O -0.578 6.578 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.035 0.965 29 H 0.413 0.587 30 H 0.064 0.936 31 H 0.062 0.938 32 H -0.008 1.008 33 H 0.034 0.966 34 H 0.265 0.735 35 H 0.005 0.995 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.022 0.978 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 9.787 -25.626 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.175 0.825 4 C 0.276 3.724 5 O -0.455 6.455 6 N -0.363 5.363 7 C 0.065 3.935 8 H 0.066 0.934 9 C -0.137 4.137 10 C -0.027 4.027 11 C -0.519 4.519 12 C -0.170 4.170 13 N -0.562 5.562 14 Si 0.756 3.244 15 H -0.173 1.173 16 H -0.209 1.209 17 H -0.206 1.206 18 C -0.062 4.062 19 C -0.142 4.142 20 N -0.344 5.344 21 C -0.026 4.026 22 C -0.151 4.151 23 C -0.194 4.194 24 C 0.292 3.708 25 O -0.458 6.458 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.054 0.946 29 H 0.250 0.750 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.011 0.989 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.023 0.977 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.196 8.788 -25.116 26.636 hybrid contribution -0.578 -0.868 1.166 1.564 sum -1.774 7.920 -23.949 25.287 Atomic orbital electron populations 1.22080 0.91492 1.02532 1.05143 1.21000 0.96535 0.97664 0.81396 0.82482 1.21721 0.79860 0.84666 0.86131 1.90687 1.39899 1.27808 1.87149 1.46054 1.53388 1.32010 1.04811 1.20552 0.96235 0.92800 0.83902 0.93430 1.21700 1.01257 0.96429 0.94266 1.19271 0.93892 0.95368 0.94147 1.20519 1.32206 1.05761 0.93403 1.25518 0.97951 0.98305 0.95216 1.69999 1.44093 1.42168 0.99987 0.85934 0.79922 0.80154 0.78439 1.17274 1.20923 1.20584 1.19875 0.96241 0.95921 0.94116 1.21722 0.98950 0.96914 0.96654 1.48243 1.51595 1.12333 1.22256 1.22458 0.94579 0.98865 0.86648 1.22621 1.05343 0.90994 0.96147 1.22372 1.02518 1.01095 0.93383 1.21695 0.79138 0.81696 0.88280 1.90690 1.42228 1.55535 1.57313 0.88935 0.88540 0.94591 0.74990 0.91699 0.91926 0.98919 0.94692 0.92621 0.97693 0.94174 0.92473 0.95932 0.86833 0.91138 0.88011 0.86727 0.87378 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.10 71.98 0.65 -2.30 16 2 C 0.14 2.99 3.28 44.24 0.15 3.14 16 3 H 0.16 1.85 8.07 -2.39 -0.02 1.83 16 4 C 0.49 16.18 6.81 87.66 0.60 16.77 16 5 O -0.58 -25.55 14.50 11.92 0.17 -25.38 16 6 N -0.71 -22.04 4.97 -442.66 -2.20 -24.23 16 7 C 0.17 6.87 2.35 44.97 0.11 6.97 16 8 H 0.05 2.22 7.57 -2.39 -0.02 2.20 16 9 C -0.10 -3.91 5.40 30.66 0.17 -3.75 16 10 C 0.01 0.57 5.92 30.11 0.18 0.75 16 11 C -0.50 -27.23 5.48 -16.17 -0.09 -27.32 16 12 C 0.03 1.63 5.44 84.65 0.46 2.09 16 13 N -0.92 -54.35 12.83 21.45 0.28 -54.08 16 14 Si 0.93 44.15 27.95 68.60 1.92 46.06 16 15 H -0.25 -11.39 5.57 99.48 0.55 -10.84 16 16 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 C -0.02 -1.19 5.65 30.06 0.17 -1.03 16 19 C -0.10 -4.69 5.49 30.61 0.17 -4.52 16 20 N -0.61 -13.21 2.63 -798.20 -2.10 -15.31 16 21 C 0.10 1.03 7.30 86.83 0.63 1.66 16 22 C -0.11 -0.87 7.18 31.66 0.23 -0.65 16 23 C -0.15 -2.65 6.86 30.59 0.21 -2.44 16 24 C 0.50 14.44 6.71 87.90 0.59 15.03 16 25 O -0.58 -23.61 15.37 11.92 0.18 -23.42 16 26 H 0.09 1.40 7.56 -2.39 -0.02 1.38 16 27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.03 1.01 6.82 -2.39 -0.02 0.99 16 29 H 0.41 9.32 8.02 -92.71 -0.74 8.58 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.03 1.90 7.20 -2.39 -0.02 1.89 16 34 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 36 H 0.04 2.01 4.35 -2.39 -0.01 2.00 16 37 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -82.92 344.76 2.57 -80.35 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.10 Total: 11.59 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.22 Total: 4.42 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -4.02 Total: -93.62 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: 0.36 Total: -48.80 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.92 Total: 46.06 kcal Total: -82.92 2.57 -80.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181313652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.328 kcal (2) G-P(sol) polarization free energy of solvation -82.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds