Wall clock time and date at job start Tue Mar 31 2020 07:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00186 * 2 1 4 4 O 1.42898 * 109.47171 * 135.00344 * 3 2 1 5 5 C 1.42902 * 114.00186 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.46855 * 330.00024 * 5 4 3 7 7 C 1.52996 * 109.46960 * 89.99675 * 5 4 3 8 8 C 1.50698 * 109.47139 * 209.99847 * 5 4 3 9 9 O 1.21278 * 120.00119 * 359.97438 * 8 5 4 10 10 N 1.34775 * 120.00202 * 180.02562 * 8 5 4 11 11 C 1.47402 * 125.58734 * 0.02562 * 10 8 5 12 12 C 1.54847 * 104.81379 * 204.61370 * 11 10 8 13 13 C 1.55127 * 101.77565 * 322.81346 * 12 11 10 14 14 H 1.08998 * 113.46248 * 159.24088 * 13 12 11 15 15 C 1.54044 * 108.25932 * 286.09230 * 13 12 11 16 16 N 1.46701 * 106.82862 * 135.80387 * 15 13 12 17 17 C 1.36942 * 125.32308 * 161.84189 * 16 15 13 18 18 H 1.07998 * 119.99526 * 359.97438 * 17 16 15 19 19 C 1.38809 * 119.99973 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00254 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99727 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47147 * 59.99979 * 21 19 17 23 23 H 1.48496 * 109.47015 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47058 * 299.99700 * 21 19 17 25 25 C 1.46633 * 109.35750 * 341.82142 * 16 15 13 26 26 C 1.46727 * 125.59260 * 179.72171 * 10 8 5 27 27 H 1.09003 * 111.32995 * 56.11644 * 26 10 8 28 28 H 1.07994 * 119.99999 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99469 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99954 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47152 * 15.00128 * 3 2 1 32 32 H 1.09001 * 109.46980 * 255.00228 * 3 2 1 33 33 H 1.09005 * 109.47615 * 300.00241 * 7 5 4 34 34 H 1.09006 * 109.47596 * 60.00249 * 7 5 4 35 35 H 1.09000 * 109.47046 * 180.02562 * 7 5 4 36 36 H 1.09003 * 110.36729 * 323.44436 * 11 10 8 37 37 H 1.08994 * 110.37358 * 85.77516 * 11 10 8 38 38 H 1.08996 * 110.96924 * 80.93304 * 12 11 10 39 39 H 1.09001 * 110.96947 * 204.69380 * 12 11 10 40 40 H 1.08995 * 109.98652 * 255.14745 * 15 13 12 41 41 H 1.08997 * 109.98700 * 16.46277 * 15 13 12 42 42 H 0.97001 * 120.00058 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.75964 * 120.92728 * 25 16 15 44 44 H 1.09005 * 109.75661 * 241.62764 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9079 2.4352 1.0328 6 1 3.9129 2.9319 0.0626 7 6 3.3031 3.3707 2.0816 8 6 5.3202 2.0861 1.4257 9 8 5.6276 0.9289 1.6186 10 7 6.2416 3.0600 1.5639 11 6 6.0038 4.5006 1.3623 12 6 7.3937 5.0860 1.0112 13 6 8.3283 4.2548 1.9288 14 1 9.3665 4.2460 1.5971 15 6 8.1516 4.7527 3.3758 16 7 8.0637 3.5613 4.2272 17 6 8.2541 3.5414 5.5832 18 1 8.4904 4.4548 6.1087 19 6 8.1445 2.3470 6.2819 20 7 7.8570 1.2337 5.6414 21 14 8.4034 2.3200 8.1317 22 1 7.4092 3.2097 8.7838 23 1 8.2329 0.9335 8.6352 24 1 9.7747 2.7952 8.4466 25 6 7.7397 2.3952 3.3994 26 6 7.6442 2.8606 1.9456 27 1 8.1440 2.1659 1.2705 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3856 2.1161 0.2660 32 1 2.4755 1.4868 -0.9927 33 1 2.2815 3.6232 1.7974 34 1 3.2981 2.8740 3.0519 35 1 3.8986 4.2816 2.1425 36 1 5.3067 4.6586 0.5393 37 1 5.6213 4.9537 2.2769 38 1 7.6320 4.9217 -0.0396 39 1 7.4447 6.1460 1.2601 40 1 9.0095 5.3578 3.6689 41 1 7.2362 5.3385 3.4590 42 1 7.7808 0.3991 6.1296 43 1 8.5239 1.6445 3.4973 44 1 6.7850 1.9737 3.7141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190440564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:30 Heat of formation + Delta-G solvation = -15.568097 kcal Electronic energy + Delta-G solvation = -24890.874177 eV Core-core repulsion = 21424.305744 eV Total energy + Delta-G solvation = -3466.568433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.34170 -38.64290 -37.13688 -34.83329 -34.10948 -32.41154 -30.98330 -30.81906 -28.57718 -26.52057 -26.23220 -24.66190 -24.13916 -22.08998 -20.77812 -20.20829 -19.67060 -18.51048 -17.38625 -16.80439 -16.34854 -15.96281 -15.60502 -15.02079 -14.86480 -14.53282 -13.92772 -13.74462 -13.60700 -13.21420 -13.02038 -12.85378 -12.61501 -12.33982 -12.14993 -12.02241 -11.79216 -11.49255 -11.42843 -11.04983 -11.02104 -10.93185 -10.67688 -10.44434 -10.22363 -10.14510 -10.13085 -9.83814 -9.64791 -9.48342 -9.10062 -8.52961 -8.13654 -6.76043 -5.61824 -2.98395 1.96790 2.95964 3.16434 3.44665 3.48345 3.51311 3.95134 4.53046 4.58001 4.75639 4.78335 4.90145 4.94750 5.03734 5.04840 5.15286 5.23487 5.31342 5.46706 5.51921 5.57590 5.63491 5.66912 5.73500 5.76198 5.79079 5.88165 6.02221 6.20592 6.22142 6.35267 6.39715 6.46339 6.51554 6.58311 6.66045 6.87451 7.10969 7.60907 7.71551 7.94258 8.00727 8.35281 8.64894 9.28998 9.90201 10.53548 11.47761 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.004619 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.028940 B = 6060.721563 C = 7205.973701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C 0.085 3.915 4 O -0.351 6.351 5 C 0.079 3.921 6 H 0.080 0.920 7 C -0.177 4.177 8 C 0.527 3.473 9 O -0.509 6.509 10 N -0.602 5.602 11 C 0.098 3.902 12 C -0.125 4.125 13 C -0.110 4.110 14 H 0.098 0.902 15 C 0.142 3.858 16 N -0.602 5.602 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.914 5.914 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.175 3.825 26 C 0.118 3.882 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.017 0.983 42 H 0.254 0.746 43 H 0.052 0.948 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.894 7.226 -14.876 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.163 4.163 3 C 0.009 3.991 4 O -0.269 6.269 5 C 0.017 3.983 6 H 0.098 0.902 7 C -0.234 4.234 8 C 0.313 3.687 9 O -0.383 6.383 10 N -0.339 5.339 11 C -0.025 4.025 12 C -0.163 4.163 13 C -0.130 4.130 14 H 0.116 0.884 15 C 0.016 3.984 16 N -0.329 5.329 17 C -0.365 4.365 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.561 5.561 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.050 3.950 26 C 0.014 3.986 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.773 6.161 -14.486 18.529 hybrid contribution -0.003 0.202 0.870 0.893 sum -9.777 6.363 -13.616 17.929 Atomic orbital electron populations 1.23799 0.95480 1.02142 1.00764 1.22765 0.95587 0.98389 0.99532 1.21636 0.89152 0.96002 0.92311 1.88112 1.43692 1.35275 1.59812 1.21818 0.89936 0.86955 0.99567 0.90190 1.22357 1.01115 0.99665 1.00281 1.19803 0.85490 0.85011 0.78374 1.90755 1.80019 1.18847 1.48648 1.48311 1.10667 1.06196 1.68698 1.22433 0.97857 0.81690 1.00528 1.22765 0.94157 0.99807 0.99558 1.23153 0.98702 0.94234 0.96921 0.88351 1.21295 0.97854 0.91126 0.88137 1.44214 1.83028 1.02260 1.03371 1.18945 1.42103 0.94218 0.81189 0.90539 1.24839 1.01697 0.95584 0.98061 1.69984 1.53791 0.98350 1.33936 0.86231 0.77882 0.76646 0.85144 1.21229 1.21592 1.21179 1.21138 1.01311 0.89280 0.83293 1.22494 0.79819 0.96643 0.99608 0.90452 0.87817 0.88530 0.86338 0.92735 0.92365 0.91754 0.90707 0.90307 0.91355 0.90783 0.91048 0.89921 0.94796 0.96516 0.93562 0.92983 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 14.31 29.01 0.42 -1.22 16 2 C -0.14 -1.59 9.89 -36.02 -0.36 -1.95 16 3 C 0.09 0.98 6.16 36.01 0.22 1.20 16 4 O -0.35 -5.66 9.50 -55.14 -0.52 -6.19 16 5 C 0.08 1.15 2.48 -27.89 -0.07 1.08 16 6 H 0.08 0.90 7.48 -51.93 -0.39 0.51 16 7 C -0.18 -2.30 9.33 37.16 0.35 -1.96 16 8 C 0.53 10.19 6.85 -10.99 -0.08 10.11 16 9 O -0.51 -12.42 16.37 -14.35 -0.23 -12.66 16 10 N -0.60 -10.65 2.99 -162.73 -0.49 -11.13 16 11 C 0.10 1.28 4.65 -2.58 -0.01 1.27 16 12 C -0.12 -1.48 6.35 -24.63 -0.16 -1.64 16 13 C -0.11 -1.80 4.35 -87.73 -0.38 -2.18 16 14 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 15 C 0.14 2.83 6.45 -3.39 -0.02 2.81 16 16 N -0.60 -15.58 3.38 -172.36 -0.58 -16.17 16 17 C -0.24 -6.71 10.25 -15.06 -0.15 -6.87 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 20 N -0.91 -28.34 10.24 55.49 0.57 -27.77 16 21 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.18 4.52 4.91 -4.00 -0.02 4.50 16 26 C 0.12 2.33 3.55 -66.61 -0.24 2.10 16 27 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.10 0.73 7.90 -52.48 -0.41 0.31 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.05 0.52 7.59 -51.93 -0.39 0.13 16 32 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 0.93 4.99 -51.93 -0.26 0.67 16 36 H 0.07 0.67 7.31 -51.93 -0.38 0.29 16 37 H 0.07 1.02 6.14 -51.93 -0.32 0.70 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.02 0.33 6.52 -51.93 -0.34 -0.01 16 42 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.05 1.52 7.33 -51.93 -0.38 1.14 16 44 H 0.05 1.65 6.66 -51.93 -0.35 1.30 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -35.75 347.29 -8.62 -44.36 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.97 Total: -0.41 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -0.59 Total: 7.02 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.50 Total: -55.07 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.76 Total: -18.84 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.75 -8.62 -44.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190440564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.794 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds