Wall clock time and date at job start Tue Mar 31 2020 07:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00186 * 2 1 4 4 O 1.42898 * 109.47171 * 135.00344 * 3 2 1 5 5 C 1.42902 * 114.00186 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.46855 * 330.00024 * 5 4 3 7 7 C 1.52996 * 109.46960 * 89.99675 * 5 4 3 8 8 C 1.50698 * 109.47139 * 209.99847 * 5 4 3 9 9 O 1.21278 * 120.00119 * 359.97438 * 8 5 4 10 10 N 1.34775 * 120.00202 * 180.02562 * 8 5 4 11 11 C 1.47402 * 125.58734 * 0.02562 * 10 8 5 12 12 C 1.54847 * 104.81379 * 204.61370 * 11 10 8 13 13 C 1.55127 * 101.77565 * 322.81346 * 12 11 10 14 14 H 1.08998 * 113.46248 * 159.24088 * 13 12 11 15 15 C 1.54044 * 108.25932 * 286.09230 * 13 12 11 16 16 N 1.46701 * 106.82862 * 135.80387 * 15 13 12 17 17 C 1.36942 * 125.32308 * 161.84189 * 16 15 13 18 18 H 1.07998 * 119.99526 * 359.97438 * 17 16 15 19 19 C 1.38809 * 119.99973 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00254 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99727 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47147 * 59.99979 * 21 19 17 23 23 H 1.48496 * 109.47015 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47058 * 299.99700 * 21 19 17 25 25 C 1.46633 * 109.35750 * 341.82142 * 16 15 13 26 26 C 1.46727 * 125.59260 * 179.72171 * 10 8 5 27 27 H 1.09003 * 111.32995 * 56.11644 * 26 10 8 28 28 H 1.07994 * 119.99999 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99469 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.99954 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47152 * 15.00128 * 3 2 1 32 32 H 1.09001 * 109.46980 * 255.00228 * 3 2 1 33 33 H 1.09005 * 109.47615 * 300.00241 * 7 5 4 34 34 H 1.09006 * 109.47596 * 60.00249 * 7 5 4 35 35 H 1.09000 * 109.47046 * 180.02562 * 7 5 4 36 36 H 1.09003 * 110.36729 * 323.44436 * 11 10 8 37 37 H 1.08994 * 110.37358 * 85.77516 * 11 10 8 38 38 H 1.08996 * 110.96924 * 80.93304 * 12 11 10 39 39 H 1.09001 * 110.96947 * 204.69380 * 12 11 10 40 40 H 1.08995 * 109.98652 * 255.14745 * 15 13 12 41 41 H 1.08997 * 109.98700 * 16.46277 * 15 13 12 42 42 H 0.97001 * 120.00058 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.75964 * 120.92728 * 25 16 15 44 44 H 1.09005 * 109.75661 * 241.62764 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9079 2.4352 1.0328 6 1 3.9129 2.9319 0.0626 7 6 3.3031 3.3707 2.0816 8 6 5.3202 2.0861 1.4257 9 8 5.6276 0.9289 1.6186 10 7 6.2416 3.0600 1.5639 11 6 6.0038 4.5006 1.3623 12 6 7.3937 5.0860 1.0112 13 6 8.3283 4.2548 1.9288 14 1 9.3665 4.2460 1.5971 15 6 8.1516 4.7527 3.3758 16 7 8.0637 3.5613 4.2272 17 6 8.2541 3.5414 5.5832 18 1 8.4904 4.4548 6.1087 19 6 8.1445 2.3470 6.2819 20 7 7.8570 1.2337 5.6414 21 14 8.4034 2.3200 8.1317 22 1 7.4092 3.2097 8.7838 23 1 8.2329 0.9335 8.6352 24 1 9.7747 2.7952 8.4466 25 6 7.7397 2.3952 3.3994 26 6 7.6442 2.8606 1.9456 27 1 8.1440 2.1659 1.2705 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3856 2.1161 0.2660 32 1 2.4755 1.4868 -0.9927 33 1 2.2815 3.6232 1.7974 34 1 3.2981 2.8740 3.0519 35 1 3.8986 4.2816 2.1425 36 1 5.3067 4.6586 0.5393 37 1 5.6213 4.9537 2.2769 38 1 7.6320 4.9217 -0.0396 39 1 7.4447 6.1460 1.2601 40 1 9.0095 5.3578 3.6689 41 1 7.2362 5.3385 3.4590 42 1 7.7808 0.3991 6.1296 43 1 8.5239 1.6445 3.4973 44 1 6.7850 1.9737 3.7141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190440564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:29 Heat of formation + Delta-G solvation = -40.543733 kcal Electronic energy + Delta-G solvation = -24891.957202 eV Core-core repulsion = 21424.305744 eV Total energy + Delta-G solvation = -3467.651458 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.75814 -39.92906 -38.50818 -36.58736 -35.01492 -34.08270 -32.59790 -32.11129 -30.27116 -28.03975 -27.16047 -26.58032 -25.37640 -23.31582 -22.56097 -21.18258 -20.91928 -19.97710 -18.91042 -18.47955 -17.57216 -17.21746 -16.90608 -16.64979 -16.16109 -15.84926 -15.68652 -15.18178 -14.70296 -14.63871 -14.38475 -14.04041 -13.94361 -13.75894 -13.58427 -13.28461 -13.07137 -12.98194 -12.79272 -12.74596 -12.49575 -12.35625 -12.19310 -11.86108 -11.84808 -11.79437 -11.58235 -11.38908 -11.19348 -10.75639 -10.53484 -10.24945 -9.62205 -8.90735 -7.84453 -5.23451 1.17864 1.40735 1.45579 1.52382 1.57079 1.88533 2.47507 2.92470 3.32182 3.36512 3.58626 3.68858 3.81046 3.83181 3.95646 4.04091 4.08137 4.20628 4.26874 4.38342 4.43540 4.54744 4.56273 4.59116 4.67537 4.71780 4.77913 4.87573 4.94822 4.98272 5.12103 5.16367 5.20988 5.31919 5.41940 5.44229 5.60678 5.65287 5.70456 5.78868 6.15499 6.17777 6.60661 7.06416 7.21290 7.78654 8.40445 9.23706 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.004619 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.028940 B = 6060.721563 C = 7205.973701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.181 4.181 3 C 0.081 3.919 4 O -0.393 6.393 5 C 0.087 3.913 6 H 0.128 0.872 7 C -0.169 4.169 8 C 0.511 3.489 9 O -0.581 6.581 10 N -0.600 5.600 11 C 0.087 3.913 12 C -0.105 4.105 13 C -0.097 4.097 14 H 0.117 0.883 15 C 0.134 3.866 16 N -0.623 5.623 17 C -0.243 4.243 18 H 0.091 0.909 19 C -0.073 4.073 20 N -0.955 5.955 21 Si 0.981 3.019 22 H -0.273 1.273 23 H -0.301 1.301 24 H -0.270 1.270 25 C 0.195 3.805 26 C 0.118 3.882 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.031 0.969 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.045 0.955 41 H 0.034 0.966 42 H 0.242 0.758 43 H -0.003 1.003 44 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.234 11.453 -16.862 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.200 4.200 3 C 0.006 3.994 4 O -0.313 6.313 5 C 0.026 3.974 6 H 0.146 0.854 7 C -0.227 4.227 8 C 0.299 3.701 9 O -0.460 6.460 10 N -0.335 5.335 11 C -0.034 4.034 12 C -0.143 4.143 13 C -0.117 4.117 14 H 0.135 0.865 15 C 0.010 3.990 16 N -0.350 5.350 17 C -0.371 4.371 18 H 0.109 0.891 19 C -0.265 4.265 20 N -0.604 5.604 21 Si 0.808 3.192 22 H -0.199 1.199 23 H -0.228 1.228 24 H -0.196 1.196 25 C 0.069 3.931 26 C 0.013 3.987 27 H 0.088 0.912 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.134 0.866 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.015 0.985 44 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -11.117 10.500 -16.502 22.498 hybrid contribution 0.374 -1.107 1.485 1.889 sum -10.743 9.393 -15.018 20.717 Atomic orbital electron populations 1.24053 0.94642 1.03673 0.97409 1.22784 0.96538 0.97924 1.02719 1.21893 0.88473 0.96831 0.92182 1.88085 1.45139 1.36518 1.61510 1.21878 0.86496 0.86967 1.02035 0.85429 1.22342 1.03528 0.99193 0.97588 1.20986 0.87620 0.84333 0.77111 1.90712 1.81490 1.21954 1.51843 1.48402 1.09354 1.08398 1.67308 1.22859 1.00141 0.78215 1.02201 1.22825 0.91028 1.00508 0.99948 1.23157 1.00605 0.92004 0.95895 0.86489 1.21620 0.98842 0.89219 0.89363 1.44534 1.82731 1.04311 1.03410 1.19479 1.40282 0.94498 0.82888 0.89143 1.25794 1.02451 0.95334 1.02970 1.70311 1.56006 0.98665 1.35394 0.85121 0.78561 0.76059 0.79428 1.19902 1.22778 1.19580 1.20633 0.96328 0.88697 0.87462 1.22211 0.82364 0.99062 0.95041 0.91212 0.86738 0.86451 0.88377 0.90134 0.90759 0.88081 0.94994 0.88705 0.86532 0.91336 0.88094 0.86568 0.93680 0.94783 0.94930 0.98485 0.98457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 14.31 67.78 0.97 -1.57 16 2 C -0.18 -3.92 9.89 25.65 0.25 -3.67 16 3 C 0.08 1.72 6.16 71.24 0.44 2.16 16 4 O -0.39 -12.75 9.50 -129.94 -1.23 -13.98 16 5 C 0.09 2.42 2.48 29.85 0.07 2.50 16 6 H 0.13 2.29 7.48 -2.39 -0.02 2.27 16 7 C -0.17 -4.07 9.33 71.98 0.67 -3.40 16 8 C 0.51 20.29 6.85 87.66 0.60 20.89 16 9 O -0.58 -30.76 16.37 16.01 0.26 -30.49 16 10 N -0.60 -20.89 2.99 -787.15 -2.35 -23.24 16 11 C 0.09 1.89 4.65 86.84 0.40 2.30 16 12 C -0.11 -1.91 6.35 31.95 0.20 -1.71 16 13 C -0.10 -2.91 4.35 -8.92 -0.04 -2.95 16 14 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 15 C 0.13 5.09 6.45 86.69 0.56 5.65 16 16 N -0.62 -33.15 3.38 -699.22 -2.36 -35.51 16 17 C -0.24 -14.09 10.25 84.03 0.86 -13.23 16 18 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 19 C -0.07 -4.43 5.48 84.86 0.47 -3.97 16 20 N -0.95 -63.72 10.24 21.65 0.22 -63.50 16 21 Si 0.98 48.35 29.55 68.60 2.03 50.38 16 22 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 25 C 0.20 10.82 4.91 86.34 0.42 11.24 16 26 C 0.12 4.78 3.55 45.72 0.16 4.94 16 27 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.11 1.52 8.06 -2.91 -0.02 1.50 16 29 H 0.12 1.36 7.90 -2.91 -0.02 1.34 16 30 H 0.10 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.08 1.24 7.59 -2.39 -0.02 1.22 16 32 H 0.07 1.27 8.09 -2.39 -0.02 1.26 16 33 H 0.10 1.68 7.87 -2.38 -0.02 1.66 16 34 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.09 1.93 4.99 -2.39 -0.01 1.92 16 36 H 0.12 1.51 7.31 -2.39 -0.02 1.49 16 37 H 0.07 1.62 6.14 -2.39 -0.01 1.60 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.12 1.48 8.08 -2.39 -0.02 1.46 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.03 1.21 6.52 -2.39 -0.02 1.19 16 42 H 0.24 15.93 8.31 -92.71 -0.77 15.16 16 43 H 0.00 -0.20 7.33 -2.39 -0.02 -0.21 16 44 H 0.00 -0.18 6.66 -2.38 -0.02 -0.20 16 Total: -1.00 -90.34 347.29 3.59 -86.76 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.97 Total: 10.40 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 6.05 Total: 19.19 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -4.49 Total: -122.24 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -0.97 Total: -44.47 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -90.34 3.59 -86.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190440564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.214 kcal (2) G-P(sol) polarization free energy of solvation -90.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds