Wall clock time and date at job start Tue Mar 31 2020 07:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 O 1.42907 * 109.47068 * 261.46580 * 3 2 1 5 5 C 1.42902 * 114.00061 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47076 * 330.00337 * 5 4 3 7 7 C 1.53005 * 109.46970 * 90.00111 * 5 4 3 8 8 C 1.50691 * 109.47344 * 209.99919 * 5 4 3 9 9 O 1.21283 * 120.00018 * 348.31865 * 8 5 4 10 10 N 1.34773 * 120.00491 * 168.31756 * 8 5 4 11 11 C 1.46929 * 120.62673 * 4.25500 * 10 8 5 12 12 C 1.52759 * 109.01025 * 233.58280 * 11 10 8 13 13 C 1.53034 * 109.38726 * 305.59377 * 12 11 10 14 14 C 1.52997 * 109.45064 * 181.25263 * 13 12 11 15 15 N 1.46503 * 109.47064 * 64.93720 * 14 13 12 16 16 C 1.36938 * 119.99610 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00066 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99496 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99621 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00244 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46806 * 90.00141 * 20 18 16 22 22 H 1.48497 * 109.47362 * 210.00447 * 20 18 16 23 23 H 1.48499 * 109.46878 * 330.00370 * 20 18 16 24 24 C 1.53048 * 109.53941 * 61.23619 * 13 12 11 25 25 C 1.46927 * 120.63616 * 184.53896 * 10 8 5 26 26 H 4.38443 * 5.44426 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.47709 * 21.46702 * 3 2 1 28 28 H 1.09006 * 109.47427 * 141.46849 * 3 2 1 29 29 H 1.09004 * 109.46858 * 296.91891 * 7 5 4 30 30 H 1.08995 * 109.46880 * 56.91319 * 7 5 4 31 31 H 1.08996 * 109.47281 * 176.91574 * 7 5 4 32 32 H 1.09002 * 109.58641 * 353.42564 * 11 10 8 33 33 H 1.09005 * 109.58347 * 113.84433 * 11 10 8 34 34 H 1.09003 * 109.56427 * 185.55113 * 12 11 10 35 35 H 1.09004 * 109.35206 * 65.50641 * 12 11 10 36 36 H 1.09007 * 109.45767 * 301.21964 * 13 12 11 37 37 H 1.09000 * 109.47546 * 184.93899 * 14 13 12 38 38 H 1.09006 * 109.46982 * 304.93688 * 14 13 12 39 39 H 0.96998 * 120.00119 * 359.97438 * 15 14 13 40 40 H 0.97002 * 119.99817 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.49698 * 178.68731 * 24 13 12 42 42 H 1.08999 * 109.49381 * 58.58952 * 24 13 12 43 43 H 1.08989 * 109.58787 * 246.15736 * 25 10 8 44 44 H 1.09004 * 109.58344 * 6.44406 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1222 0.2008 1.3324 5 6 4.5467 0.2188 1.4440 6 1 4.9797 -0.4162 0.6711 7 6 5.0539 1.6518 1.2699 8 6 4.9509 -0.2956 2.8015 9 8 4.1149 -0.4427 3.6678 10 7 6.2413 -0.5924 3.0530 11 6 7.2791 -0.3324 2.0460 12 6 8.0668 -1.6179 1.8000 13 6 8.6018 -2.1487 3.1319 14 6 9.4172 -3.4192 2.8835 15 7 10.6045 -3.0902 2.0907 16 6 11.4897 -4.0753 1.7425 17 1 11.3128 -5.0945 2.0526 18 6 12.6149 -3.7634 0.9917 19 7 13.4660 -4.7101 0.6574 20 14 12.9212 -2.0003 0.4560 21 1 13.7235 -1.3007 1.4914 22 1 13.6618 -1.9956 -0.8311 23 1 11.6216 -1.3031 0.2818 24 6 7.4301 -2.4688 4.0631 25 6 6.6361 -1.1876 4.3370 26 1 -1.0500 0.0002 -0.0001 27 1 3.0098 -0.9555 -0.3761 28 1 3.0090 0.8048 -0.6402 29 1 4.8093 2.0046 0.2680 30 1 4.5788 2.2975 2.0084 31 1 6.1347 1.6742 1.4093 32 1 6.8127 -0.0076 1.1159 33 1 7.9542 0.4427 2.4088 34 1 8.9008 -1.4123 1.1289 35 1 7.4112 -2.3626 1.3485 36 1 9.2376 -1.3937 3.5946 37 1 9.7247 -3.8461 3.8381 38 1 8.8074 -4.1422 2.3417 39 1 10.7631 -2.1748 1.8119 40 1 14.2521 -4.4923 0.1325 41 1 7.8110 -2.8686 5.0028 42 1 6.7805 -3.2054 3.5904 43 1 7.2576 -0.4838 4.8903 44 1 5.7455 -1.4248 4.9190 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205249211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:14 Heat of formation + Delta-G solvation = -10.151471 kcal Electronic energy + Delta-G solvation = -23768.177225 eV Core-core repulsion = 20301.843674 eV Total energy + Delta-G solvation = -3466.333551 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.64693 -38.63315 -37.51264 -35.18514 -33.90087 -33.07487 -31.97825 -30.75451 -30.67441 -27.49874 -27.18087 -24.79768 -23.40629 -23.18624 -21.47353 -20.47484 -19.46675 -18.86955 -17.73759 -17.38096 -16.98638 -16.20271 -15.79944 -15.24110 -14.95444 -14.72996 -14.48502 -14.18193 -13.95786 -13.81014 -13.57997 -13.27424 -12.87078 -12.77948 -12.54994 -12.46317 -12.36364 -11.98144 -11.78560 -11.42686 -11.29136 -11.01810 -10.95751 -10.90416 -10.59426 -10.46179 -10.30524 -10.16293 -10.08377 -9.63215 -9.60914 -8.93484 -8.76587 -7.26310 -5.79989 -3.15508 2.01107 2.42515 2.46257 2.75033 3.30411 3.34373 3.40833 3.59124 4.06802 4.26772 4.45989 4.54699 4.60413 4.68481 4.78704 4.83015 4.89038 4.99293 5.01019 5.17829 5.20415 5.28119 5.28817 5.43315 5.51710 5.54881 5.65596 5.68368 5.72394 5.79315 5.85928 6.01638 6.07649 6.21416 6.29371 6.41766 6.63130 6.66369 6.76019 7.20973 7.22423 7.96700 8.00456 8.39062 9.18130 9.90201 10.10156 11.38601 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.003140 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.660792 B = 8915.837371 C = 9405.702162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.192 4.192 3 C 0.169 3.831 4 O -0.352 6.352 5 C 0.071 3.929 6 H 0.091 0.909 7 C -0.177 4.177 8 C 0.518 3.482 9 O -0.523 6.523 10 N -0.606 5.606 11 C 0.099 3.901 12 C -0.130 4.130 13 C -0.098 4.098 14 C 0.162 3.838 15 N -0.755 5.755 16 C -0.243 4.243 17 H 0.089 0.911 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.126 4.126 25 C 0.114 3.886 26 H 0.222 0.778 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.026 0.974 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.145 13.237 -0.089 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.192 4.192 3 C 0.093 3.907 4 O -0.270 6.270 5 C 0.010 3.990 6 H 0.108 0.892 7 C -0.235 4.235 8 C 0.305 3.695 9 O -0.398 6.398 10 N -0.342 5.342 11 C -0.023 4.023 12 C -0.168 4.168 13 C -0.117 4.117 14 C 0.035 3.965 15 N -0.401 5.401 16 C -0.373 4.373 17 H 0.107 0.893 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.716 3.284 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.164 4.164 25 C -0.008 4.008 26 H 0.239 0.761 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.614 12.953 0.520 24.351 hybrid contribution 0.494 1.115 -0.796 1.457 sum -20.120 14.068 -0.277 24.552 Atomic orbital electron populations 1.24977 0.95888 1.00619 0.97386 1.22411 0.93774 1.00802 1.02245 1.19197 0.85111 1.01346 0.85008 1.88113 1.18970 1.93511 1.26445 1.21927 0.82769 0.98155 0.96154 0.89171 1.22372 1.02384 0.95052 1.03657 1.20241 0.82094 0.77887 0.89316 1.90710 1.50034 1.52232 1.46872 1.48074 1.06288 1.62388 1.17427 1.21951 0.90228 0.98690 0.91472 1.21910 1.00106 0.96276 0.98515 1.21361 0.96072 0.99261 0.94983 1.20651 0.87671 0.93459 0.94705 1.42722 1.25186 1.07499 1.64717 1.19069 1.00124 0.90711 1.27439 0.89283 1.24692 0.97214 0.96974 1.00436 1.69702 1.14135 1.31247 1.43167 0.86533 0.77596 0.86023 0.78216 1.21115 1.21767 1.20399 1.21911 0.97014 0.96940 1.00577 1.21643 0.99991 0.94691 0.84443 0.76085 0.90468 0.90507 0.90971 0.90829 0.90189 0.89757 0.90814 0.89785 0.91302 0.90933 0.95417 0.95581 0.80726 0.93057 0.90282 0.91355 0.91361 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 19.25 29.55 0.57 -0.92 16 2 C -0.19 -1.98 13.73 -37.13 -0.51 -2.49 16 3 C 0.17 1.50 6.22 34.37 0.21 1.72 16 4 O -0.35 -4.26 9.51 -54.87 -0.52 -4.78 16 5 C 0.07 0.71 2.28 -27.88 -0.06 0.64 16 6 H 0.09 0.69 6.90 -51.93 -0.36 0.33 16 7 C -0.18 -1.34 9.12 37.16 0.34 -1.00 16 8 C 0.52 6.72 7.05 -10.99 -0.08 6.65 16 9 O -0.52 -8.95 15.97 -14.08 -0.22 -9.18 16 10 N -0.61 -6.86 2.98 -173.03 -0.52 -7.37 16 11 C 0.10 0.95 5.17 -3.93 -0.02 0.93 16 12 C -0.13 -1.60 5.23 -26.84 -0.14 -1.74 16 13 C -0.10 -1.33 2.19 -90.58 -0.20 -1.53 16 14 C 0.16 2.95 5.65 -4.04 -0.02 2.92 16 15 N -0.76 -17.11 5.12 -59.90 -0.31 -17.41 16 16 C -0.24 -6.76 10.47 -15.06 -0.16 -6.91 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 19 N -0.93 -29.02 13.97 55.49 0.78 -28.25 16 20 Si 0.89 21.36 27.74 -169.99 -4.71 16.64 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.09 6.52 56.52 0.37 -5.72 16 24 C -0.13 -1.47 5.36 -26.61 -0.14 -1.61 16 25 C 0.11 1.29 6.42 -3.71 -0.02 1.26 16 26 H 0.22 1.05 7.80 -54.09 -0.42 0.63 16 27 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.08 0.49 7.94 -51.93 -0.41 0.08 16 29 H 0.07 0.41 7.94 -51.93 -0.41 0.00 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.52 5.89 -51.93 -0.31 0.21 16 32 H 0.08 0.63 4.70 -51.93 -0.24 0.39 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.16 7.15 -51.93 -0.37 0.79 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.36 7.80 4.70 -40.82 -0.19 7.61 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.70 8.14 -51.94 -0.42 0.27 16 44 H 0.09 1.12 7.03 -51.93 -0.37 0.75 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -35.38 357.45 -7.35 -42.73 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.90 Total: 4.32 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.33 Total: -2.09 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.05 Total: -53.03 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.75 Total: -13.96 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.38 -7.35 -42.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205249211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.583 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds