Wall clock time and date at job start Tue Mar 31 2020 07:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 O 1.42907 * 109.47068 * 261.46580 * 3 2 1 5 5 C 1.42902 * 114.00061 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47076 * 330.00337 * 5 4 3 7 7 C 1.53005 * 109.46970 * 90.00111 * 5 4 3 8 8 C 1.50691 * 109.47344 * 209.99919 * 5 4 3 9 9 O 1.21283 * 120.00018 * 348.31865 * 8 5 4 10 10 N 1.34773 * 120.00491 * 168.31756 * 8 5 4 11 11 C 1.46929 * 120.62673 * 4.25500 * 10 8 5 12 12 C 1.52759 * 109.01025 * 233.58280 * 11 10 8 13 13 C 1.53034 * 109.38726 * 305.59377 * 12 11 10 14 14 C 1.52997 * 109.45064 * 181.25263 * 13 12 11 15 15 N 1.46503 * 109.47064 * 64.93720 * 14 13 12 16 16 C 1.36938 * 119.99610 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00066 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99496 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99621 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00244 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46806 * 90.00141 * 20 18 16 22 22 H 1.48497 * 109.47362 * 210.00447 * 20 18 16 23 23 H 1.48499 * 109.46878 * 330.00370 * 20 18 16 24 24 C 1.53048 * 109.53941 * 61.23619 * 13 12 11 25 25 C 1.46927 * 120.63616 * 184.53896 * 10 8 5 26 26 H 4.38443 * 5.44426 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.47709 * 21.46702 * 3 2 1 28 28 H 1.09006 * 109.47427 * 141.46849 * 3 2 1 29 29 H 1.09004 * 109.46858 * 296.91891 * 7 5 4 30 30 H 1.08995 * 109.46880 * 56.91319 * 7 5 4 31 31 H 1.08996 * 109.47281 * 176.91574 * 7 5 4 32 32 H 1.09002 * 109.58641 * 353.42564 * 11 10 8 33 33 H 1.09005 * 109.58347 * 113.84433 * 11 10 8 34 34 H 1.09003 * 109.56427 * 185.55113 * 12 11 10 35 35 H 1.09004 * 109.35206 * 65.50641 * 12 11 10 36 36 H 1.09007 * 109.45767 * 301.21964 * 13 12 11 37 37 H 1.09000 * 109.47546 * 184.93899 * 14 13 12 38 38 H 1.09006 * 109.46982 * 304.93688 * 14 13 12 39 39 H 0.96998 * 120.00119 * 359.97438 * 15 14 13 40 40 H 0.97002 * 119.99817 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.49698 * 178.68731 * 24 13 12 42 42 H 1.08999 * 109.49381 * 58.58952 * 24 13 12 43 43 H 1.08989 * 109.58787 * 246.15736 * 25 10 8 44 44 H 1.09004 * 109.58344 * 6.44406 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1222 0.2008 1.3324 5 6 4.5467 0.2188 1.4440 6 1 4.9797 -0.4162 0.6711 7 6 5.0539 1.6518 1.2699 8 6 4.9509 -0.2956 2.8015 9 8 4.1149 -0.4427 3.6678 10 7 6.2413 -0.5924 3.0530 11 6 7.2791 -0.3324 2.0460 12 6 8.0668 -1.6179 1.8000 13 6 8.6018 -2.1487 3.1319 14 6 9.4172 -3.4192 2.8835 15 7 10.6045 -3.0902 2.0907 16 6 11.4897 -4.0753 1.7425 17 1 11.3128 -5.0945 2.0526 18 6 12.6149 -3.7634 0.9917 19 7 13.4660 -4.7101 0.6574 20 14 12.9212 -2.0003 0.4560 21 1 13.7235 -1.3007 1.4914 22 1 13.6618 -1.9956 -0.8311 23 1 11.6216 -1.3031 0.2818 24 6 7.4301 -2.4688 4.0631 25 6 6.6361 -1.1876 4.3370 26 1 -1.0500 0.0002 -0.0001 27 1 3.0098 -0.9555 -0.3761 28 1 3.0090 0.8048 -0.6402 29 1 4.8093 2.0046 0.2680 30 1 4.5788 2.2975 2.0084 31 1 6.1347 1.6742 1.4093 32 1 6.8127 -0.0076 1.1159 33 1 7.9542 0.4427 2.4088 34 1 8.9008 -1.4123 1.1289 35 1 7.4112 -2.3626 1.3485 36 1 9.2376 -1.3937 3.5946 37 1 9.7247 -3.8461 3.8381 38 1 8.8074 -4.1422 2.3417 39 1 10.7631 -2.1748 1.8119 40 1 14.2521 -4.4923 0.1325 41 1 7.8110 -2.8686 5.0028 42 1 6.7805 -3.2054 3.5904 43 1 7.2576 -0.4838 4.8903 44 1 5.7455 -1.4248 4.9190 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205249211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:13 Heat of formation + Delta-G solvation = -33.607705 kcal Electronic energy + Delta-G solvation = -23769.194363 eV Core-core repulsion = 20301.843674 eV Total energy + Delta-G solvation = -3467.350690 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.55752 -39.50587 -38.53905 -36.69643 -34.79498 -34.32073 -33.16827 -32.29398 -31.50854 -28.55185 -28.11013 -25.93673 -24.52803 -24.34110 -22.89350 -21.56708 -20.36886 -19.76698 -19.42695 -18.25172 -17.82536 -17.01891 -16.66437 -16.53808 -16.14111 -15.88366 -15.65260 -15.48919 -15.08066 -14.78496 -14.60368 -14.39284 -14.15188 -13.82331 -13.70988 -13.41649 -13.27875 -13.14721 -13.00331 -12.77304 -12.45092 -12.19324 -12.13453 -11.86531 -11.73906 -11.65269 -11.58965 -11.47845 -11.38689 -10.95590 -10.83945 -10.46685 -9.70855 -9.27096 -8.00329 -5.34351 1.29434 1.39484 1.45982 1.50423 1.53305 1.79638 1.93899 2.51903 2.93461 3.30969 3.33944 3.56749 3.61953 3.74933 3.85139 3.89011 4.00874 4.06127 4.16304 4.23052 4.35554 4.40923 4.43605 4.55895 4.65734 4.71067 4.73239 4.82392 4.85361 4.92382 4.99510 5.03303 5.08647 5.14978 5.20637 5.25477 5.49839 5.53961 5.77829 5.96009 6.23239 6.33730 6.57587 7.07748 7.10894 7.86057 8.07713 9.21454 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.003140 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.660792 B = 8915.837371 C = 9405.702162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.239 4.239 3 C 0.163 3.837 4 O -0.386 6.386 5 C 0.071 3.929 6 H 0.117 0.883 7 C -0.172 4.172 8 C 0.511 3.489 9 O -0.576 6.576 10 N -0.603 5.603 11 C 0.102 3.898 12 C -0.128 4.128 13 C -0.088 4.088 14 C 0.159 3.841 15 N -0.753 5.753 16 C -0.237 4.237 17 H 0.049 0.951 18 C -0.070 4.070 19 N -0.988 5.988 20 Si 0.960 3.040 21 H -0.279 1.279 22 H -0.299 1.299 23 H -0.238 1.238 24 C -0.117 4.117 25 C 0.115 3.885 26 H 0.253 0.747 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.369 0.631 40 H 0.257 0.743 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.924 16.197 -1.053 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.239 4.239 3 C 0.088 3.912 4 O -0.305 6.305 5 C 0.010 3.990 6 H 0.134 0.866 7 C -0.229 4.229 8 C 0.300 3.700 9 O -0.455 6.455 10 N -0.336 5.336 11 C -0.020 4.020 12 C -0.166 4.166 13 C -0.107 4.107 14 C 0.033 3.967 15 N -0.400 5.400 16 C -0.368 4.368 17 H 0.067 0.933 18 C -0.261 4.261 19 N -0.638 5.638 20 Si 0.786 3.214 21 H -0.206 1.206 22 H -0.225 1.225 23 H -0.161 1.161 24 C -0.155 4.155 25 C -0.007 4.007 26 H 0.269 0.731 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.203 0.797 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.420 15.932 -0.436 26.699 hybrid contribution 0.677 0.039 -0.435 0.806 sum -20.743 15.971 -0.870 26.194 Atomic orbital electron populations 1.25878 0.96924 0.99424 0.95933 1.23138 0.95066 1.02082 1.03629 1.19459 0.84636 1.02978 0.84110 1.88066 1.20208 1.93789 1.28481 1.22082 0.82280 0.99968 0.94659 0.86566 1.22376 1.03021 0.92975 1.04540 1.20921 0.81927 0.77084 0.90115 1.90682 1.51460 1.54632 1.48709 1.48159 1.06343 1.61505 1.17625 1.22100 0.89891 0.97580 0.92400 1.21868 1.00027 0.97536 0.97219 1.21259 0.96037 0.96918 0.96453 1.20796 0.86620 0.95932 0.93339 1.42653 1.25492 1.06790 1.65035 1.19023 1.00960 0.90298 1.26507 0.93270 1.25626 0.97021 1.02329 1.01075 1.69912 1.14995 1.34248 1.44666 0.85342 0.79055 0.79891 0.77104 1.20562 1.22549 1.16149 1.21814 0.96138 0.97115 1.00456 1.21612 0.99503 0.94756 0.84797 0.73125 0.89313 0.87899 0.88640 0.92488 0.88590 0.86953 0.88818 0.90527 0.91906 0.89982 0.96163 0.96515 0.79694 0.93387 0.89486 0.92289 0.89643 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 19.25 74.32 1.43 -1.21 16 2 C -0.24 -4.70 13.73 31.12 0.43 -4.27 16 3 C 0.16 2.64 6.22 70.17 0.44 3.07 16 4 O -0.39 -8.90 9.51 -130.21 -1.24 -10.14 16 5 C 0.07 1.23 2.28 29.85 0.07 1.30 16 6 H 0.12 1.36 6.90 -2.39 -0.02 1.35 16 7 C -0.17 -2.02 9.12 71.98 0.66 -1.37 16 8 C 0.51 12.53 7.05 87.65 0.62 13.15 16 9 O -0.58 -19.80 15.97 15.73 0.25 -19.55 16 10 N -0.60 -12.13 2.98 -819.74 -2.44 -14.57 16 11 C 0.10 1.54 5.17 86.22 0.45 1.99 16 12 C -0.13 -2.75 5.23 30.53 0.16 -2.59 16 13 C -0.09 -2.18 2.19 -10.77 -0.02 -2.20 16 14 C 0.16 5.65 5.65 86.38 0.49 6.14 16 15 N -0.75 -33.14 5.12 -343.44 -1.76 -34.90 16 16 C -0.24 -13.29 10.47 84.03 0.88 -12.41 16 17 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 19 N -0.99 -62.83 13.97 21.65 0.30 -62.53 16 20 Si 0.96 43.08 27.74 68.60 1.90 44.98 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.24 -9.00 6.52 99.48 0.65 -8.35 16 24 C -0.12 -2.53 5.36 30.67 0.16 -2.37 16 25 C 0.12 2.39 6.42 86.36 0.55 2.94 16 26 H 0.25 1.85 7.80 -4.42 -0.03 1.82 16 27 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 28 H 0.10 1.03 7.94 -2.38 -0.02 1.01 16 29 H 0.09 0.69 7.94 -2.38 -0.02 0.67 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.80 5.89 -2.39 -0.01 0.79 16 32 H 0.11 1.11 4.70 -2.39 -0.01 1.10 16 33 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.08 1.81 7.15 -2.39 -0.02 1.79 16 35 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.37 14.86 4.70 -92.71 -0.44 14.43 16 40 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.86 7.03 -2.38 -0.02 1.85 16 Total: -1.00 -80.29 357.45 4.28 -76.01 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.49 Total: 22.07 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 6.77 Total: -1.37 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -3.90 Total: -112.01 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.99 Total: -29.69 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.90 Total: 44.98 kcal Total: -80.29 4.28 -76.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205249211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.406 kcal (2) G-P(sol) polarization free energy of solvation -80.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds