Wall clock time and date at job start Tue Mar 31 2020 07:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99422 * 2 1 4 4 O 1.42906 * 109.46921 * 135.00253 * 3 2 1 5 5 C 1.42898 * 113.99974 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47212 * 29.99578 * 5 4 3 7 7 C 1.53008 * 109.46841 * 269.99753 * 5 4 3 8 8 C 1.50694 * 109.47493 * 149.99691 * 5 4 3 9 9 O 1.21280 * 120.00039 * 5.00300 * 8 5 4 10 10 N 1.34773 * 120.00349 * 184.99459 * 8 5 4 11 11 C 1.47290 * 136.54358 * 0.02562 * 10 8 5 12 12 C 1.54083 * 87.60786 * 151.37959 * 11 10 8 13 13 H 1.09002 * 115.04691 * 141.62787 * 12 11 10 14 14 C 1.53061 * 111.39545 * 273.97651 * 12 11 10 15 15 C 1.52704 * 109.28629 * 142.28585 * 14 12 11 16 16 N 1.46532 * 108.49085 * 301.79326 * 15 14 12 17 17 C 1.36932 * 119.73919 * 236.40021 * 16 15 14 18 18 H 1.07999 * 120.00516 * 150.67637 * 17 16 15 19 19 C 1.38814 * 119.99948 * 330.67244 * 17 16 15 20 20 N 1.31621 * 120.00002 * 335.01992 * 19 17 16 21 21 Si 1.86797 * 120.00038 * 155.01194 * 19 17 16 22 22 H 1.48505 * 109.47055 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47480 * 240.00441 * 21 19 17 24 24 H 1.48503 * 109.46855 * 120.00228 * 21 19 17 25 25 C 1.45701 * 120.52585 * 56.12133 * 16 15 14 26 26 C 1.46468 * 136.54414 * 179.97438 * 10 8 5 27 27 H 1.08998 * 111.44394 * 97.10012 * 26 10 8 28 28 H 1.08004 * 119.99111 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00395 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.00771 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47411 * 15.00402 * 3 2 1 32 32 H 1.09004 * 109.47136 * 254.99623 * 3 2 1 33 33 H 1.09001 * 109.46891 * 179.97438 * 7 5 4 34 34 H 1.08998 * 109.47075 * 299.99909 * 7 5 4 35 35 H 1.09004 * 109.46997 * 60.00266 * 7 5 4 36 36 H 1.08992 * 113.52679 * 266.06440 * 11 10 8 37 37 H 1.09005 * 113.52671 * 36.62855 * 11 10 8 38 38 H 1.09002 * 109.51266 * 262.32540 * 14 12 11 39 39 H 1.09006 * 109.51799 * 22.47856 * 14 12 11 40 40 H 1.08997 * 109.62030 * 182.00589 * 15 14 12 41 41 H 1.09000 * 109.55278 * 61.54015 * 15 14 12 42 42 H 0.96999 * 120.00223 * 354.27104 * 20 19 17 43 43 H 1.09000 * 108.78765 * 81.15849 * 25 16 15 44 44 H 1.09001 * 108.79286 * 199.37548 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9076 2.4355 1.0329 6 1 3.2831 3.2950 0.7894 7 6 5.0699 2.3522 0.0413 8 6 4.4497 2.5883 2.4306 9 8 4.2692 1.7127 3.2501 10 7 5.1352 3.6979 2.7700 11 6 5.5554 4.9413 2.1017 12 6 5.5012 5.6251 3.4814 13 1 6.2922 6.3515 3.6679 14 6 4.0912 6.1283 3.8001 15 6 3.8037 5.9165 5.2848 16 7 3.9464 4.4898 5.5869 17 6 2.9018 3.8071 6.1506 18 1 2.7794 2.7516 5.9574 19 6 2.0002 4.4716 6.9706 20 7 2.3686 5.5652 7.6036 21 14 0.2639 3.8139 7.1756 22 1 0.1027 2.5806 6.3640 23 1 -0.7104 4.8377 6.7197 24 1 0.0192 3.5000 8.6063 25 6 5.1888 3.7904 5.2867 26 6 5.7983 4.2125 3.9704 27 1 6.8696 4.0127 3.9505 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3854 2.1161 0.2660 32 1 2.4755 1.4869 -0.9927 33 1 5.6653 3.2632 0.1022 34 1 5.6943 1.4927 0.2848 35 1 4.6777 2.2418 -0.9697 36 1 6.5593 4.8909 1.6802 37 1 4.8197 5.3256 1.3951 38 1 4.0211 7.1897 3.5623 39 1 3.3638 5.5729 3.2080 40 1 2.7878 6.2403 5.5107 41 1 4.5140 6.4910 5.8795 42 1 3.2916 5.8609 7.5640 43 1 5.9046 3.9881 6.0846 44 1 4.9898 2.7192 5.2542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222069399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:32 Heat of formation + Delta-G solvation = 10.297286 kcal Electronic energy + Delta-G solvation = -25093.755706 eV Core-core repulsion = 21628.308880 eV Total energy + Delta-G solvation = -3465.446826 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79155 -38.83650 -37.12418 -35.53989 -34.10646 -32.08940 -31.16987 -30.94754 -28.54626 -26.84112 -26.33058 -24.23047 -23.66090 -22.63212 -21.12076 -20.31567 -19.76046 -17.87105 -17.37656 -16.96263 -16.50035 -15.97745 -15.72244 -15.28042 -14.72628 -14.18017 -13.97922 -13.83213 -13.53040 -13.41727 -13.09920 -12.98414 -12.79356 -12.68532 -12.38016 -12.22023 -11.88054 -11.77979 -11.48368 -11.08381 -10.98884 -10.73754 -10.63047 -10.49077 -10.08730 -10.05054 -9.94317 -9.80676 -9.51803 -9.23578 -8.93293 -8.37613 -8.21050 -6.75864 -5.96463 -3.12245 2.01546 2.86932 3.01804 3.58506 3.60460 3.77766 3.84520 4.49194 4.53454 4.69473 4.79991 4.83547 4.97067 5.02809 5.10797 5.16603 5.25229 5.32218 5.38840 5.41908 5.42735 5.48278 5.53890 5.62381 5.71889 5.77631 5.89022 5.92533 5.95768 6.11855 6.36423 6.43430 6.46131 6.52200 6.53500 6.74080 6.92295 7.06329 7.10051 7.23922 8.11092 8.24257 8.59644 8.71033 9.25818 9.97574 10.36165 11.31942 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.006143 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.008768 B = 4556.819364 C = 6268.844009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.352 6.352 5 C 0.078 3.922 6 H 0.081 0.919 7 C -0.166 4.166 8 C 0.545 3.455 9 O -0.505 6.505 10 N -0.632 5.632 11 C 0.094 3.906 12 C -0.111 4.111 13 H 0.094 0.906 14 C -0.117 4.117 15 C 0.150 3.850 16 N -0.588 5.588 17 C -0.337 4.337 18 H 0.056 0.944 19 C -0.026 4.026 20 N -0.921 5.921 21 Si 1.064 2.936 22 H -0.292 1.292 23 H -0.291 1.291 24 H -0.294 1.294 25 C 0.144 3.856 26 C 0.129 3.871 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.018 0.982 42 H 0.268 0.732 43 H 0.016 0.984 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.032 -1.112 -18.797 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.167 4.167 3 C 0.010 3.990 4 O -0.270 6.270 5 C 0.017 3.983 6 H 0.099 0.901 7 C -0.224 4.224 8 C 0.333 3.667 9 O -0.378 6.378 10 N -0.370 5.370 11 C -0.030 4.030 12 C -0.130 4.130 13 H 0.112 0.888 14 C -0.156 4.156 15 C 0.024 3.976 16 N -0.312 5.312 17 C -0.466 4.466 18 H 0.074 0.926 19 C -0.227 4.227 20 N -0.562 5.562 21 Si 0.894 3.106 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.221 1.221 25 C 0.017 3.983 26 C 0.025 3.975 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.135 0.865 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.036 0.964 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.338 -1.737 -17.600 17.998 hybrid contribution 1.571 -0.138 -1.028 1.883 sum 4.909 -1.875 -18.628 19.355 Atomic orbital electron populations 1.23839 0.95543 1.02321 0.99912 1.22681 0.95632 0.98038 1.00321 1.21650 0.88841 0.96340 0.92191 1.88081 1.44090 1.34481 1.60331 1.21775 0.93680 0.89318 0.93552 0.90109 1.22202 0.98125 1.03341 0.98722 1.19588 0.78417 0.80045 0.88661 1.90742 1.56510 1.39432 1.51164 1.49346 1.54270 1.17816 1.15584 1.23364 0.99464 0.83219 0.96926 1.22805 0.99801 0.95783 0.94593 0.88780 1.21816 0.93479 0.98957 1.01378 1.20746 1.01115 0.85645 0.90068 1.43536 1.11086 1.05608 1.70939 1.20087 1.05347 0.95604 1.25607 0.92626 1.25757 1.04938 0.98412 0.93573 1.70730 1.20336 1.26533 1.38627 0.83545 0.76040 0.75176 0.75796 1.21774 1.21813 1.22133 1.20248 0.88894 0.98263 0.90916 1.22331 0.95607 0.90874 0.88659 0.90589 0.87749 0.88355 0.86546 0.92569 0.92420 0.91071 0.91228 0.91538 0.90236 0.90864 0.92494 0.92181 0.89861 0.96447 0.92150 0.96601 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 14.31 29.01 0.42 -1.44 16 2 C -0.15 -1.75 9.89 -36.02 -0.36 -2.10 16 3 C 0.09 1.06 6.16 36.01 0.22 1.28 16 4 O -0.35 -5.77 9.51 -55.09 -0.52 -6.30 16 5 C 0.08 1.15 3.00 -27.88 -0.08 1.07 16 6 H 0.08 1.05 7.79 -51.93 -0.40 0.65 16 7 C -0.17 -1.79 9.45 37.16 0.35 -1.44 16 8 C 0.55 10.45 7.36 -10.99 -0.08 10.37 16 9 O -0.51 -12.37 15.75 -14.30 -0.23 -12.60 16 10 N -0.63 -10.62 3.31 -187.72 -0.62 -11.24 16 11 C 0.09 1.12 6.52 -11.54 -0.08 1.05 16 12 C -0.11 -1.62 4.57 -90.33 -0.41 -2.03 16 13 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.12 -2.08 5.68 -26.85 -0.15 -2.23 16 15 C 0.15 3.48 4.63 -4.18 -0.02 3.46 16 16 N -0.59 -15.27 2.86 -175.19 -0.50 -15.77 16 17 C -0.34 -10.02 9.39 -15.06 -0.14 -10.16 16 18 H 0.06 1.78 7.90 -52.49 -0.41 1.36 16 19 C -0.03 -0.76 4.63 -17.43 -0.08 -0.84 16 20 N -0.92 -28.14 12.38 55.49 0.69 -27.45 16 21 Si 1.06 26.90 29.99 -169.99 -5.10 21.80 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 C 0.14 3.27 6.15 -5.44 -0.03 3.24 16 26 C 0.13 2.25 4.03 -77.71 -0.31 1.94 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.10 0.91 8.06 -52.48 -0.42 0.49 16 29 H 0.10 0.95 7.90 -52.49 -0.41 0.53 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.06 0.67 7.80 -51.93 -0.41 0.27 16 32 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 33 H 0.07 0.65 6.88 -51.93 -0.36 0.29 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.57 7.87 -51.93 -0.41 0.17 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.16 7.68 -51.93 -0.40 0.76 16 40 H 0.08 2.20 6.18 -51.93 -0.32 1.88 16 41 H 0.02 0.40 7.95 -51.93 -0.41 -0.01 16 42 H 0.27 8.18 6.82 -40.82 -0.28 7.90 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 1.84 6.46 -51.93 -0.34 1.50 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -36.04 353.01 -8.88 -44.92 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.16 Total: -0.86 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.76 Total: 2.16 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.43 Total: -54.46 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.75 Total: -18.89 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -5.10 Total: 21.80 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.04 -8.88 -44.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222069399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.219 kcal (2) G-P(sol) polarization free energy of solvation -36.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds