Wall clock time and date at job start Tue Mar 31 2020 07:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99422 * 2 1 4 4 O 1.42906 * 109.46921 * 135.00253 * 3 2 1 5 5 C 1.42898 * 113.99974 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47212 * 29.99578 * 5 4 3 7 7 C 1.53008 * 109.46841 * 269.99753 * 5 4 3 8 8 C 1.50694 * 109.47493 * 149.99691 * 5 4 3 9 9 O 1.21280 * 120.00039 * 5.00300 * 8 5 4 10 10 N 1.34773 * 120.00349 * 184.99459 * 8 5 4 11 11 C 1.47290 * 136.54358 * 0.02562 * 10 8 5 12 12 C 1.54083 * 87.60786 * 151.37959 * 11 10 8 13 13 H 1.09002 * 115.04691 * 141.62787 * 12 11 10 14 14 C 1.53061 * 111.39545 * 273.97651 * 12 11 10 15 15 C 1.52704 * 109.28629 * 142.28585 * 14 12 11 16 16 N 1.46532 * 108.49085 * 301.79326 * 15 14 12 17 17 C 1.36932 * 119.73919 * 236.40021 * 16 15 14 18 18 H 1.07999 * 120.00516 * 150.67637 * 17 16 15 19 19 C 1.38814 * 119.99948 * 330.67244 * 17 16 15 20 20 N 1.31621 * 120.00002 * 335.01992 * 19 17 16 21 21 Si 1.86797 * 120.00038 * 155.01194 * 19 17 16 22 22 H 1.48505 * 109.47055 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47480 * 240.00441 * 21 19 17 24 24 H 1.48503 * 109.46855 * 120.00228 * 21 19 17 25 25 C 1.45701 * 120.52585 * 56.12133 * 16 15 14 26 26 C 1.46468 * 136.54414 * 179.97438 * 10 8 5 27 27 H 1.08998 * 111.44394 * 97.10012 * 26 10 8 28 28 H 1.08004 * 119.99111 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00395 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.00771 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47411 * 15.00402 * 3 2 1 32 32 H 1.09004 * 109.47136 * 254.99623 * 3 2 1 33 33 H 1.09001 * 109.46891 * 179.97438 * 7 5 4 34 34 H 1.08998 * 109.47075 * 299.99909 * 7 5 4 35 35 H 1.09004 * 109.46997 * 60.00266 * 7 5 4 36 36 H 1.08992 * 113.52679 * 266.06440 * 11 10 8 37 37 H 1.09005 * 113.52671 * 36.62855 * 11 10 8 38 38 H 1.09002 * 109.51266 * 262.32540 * 14 12 11 39 39 H 1.09006 * 109.51799 * 22.47856 * 14 12 11 40 40 H 1.08997 * 109.62030 * 182.00589 * 15 14 12 41 41 H 1.09000 * 109.55278 * 61.54015 * 15 14 12 42 42 H 0.96999 * 120.00223 * 354.27104 * 20 19 17 43 43 H 1.09000 * 108.78765 * 81.15849 * 25 16 15 44 44 H 1.09001 * 108.79286 * 199.37548 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9076 2.4355 1.0329 6 1 3.2831 3.2950 0.7894 7 6 5.0699 2.3522 0.0413 8 6 4.4497 2.5883 2.4306 9 8 4.2692 1.7127 3.2501 10 7 5.1352 3.6979 2.7700 11 6 5.5554 4.9413 2.1017 12 6 5.5012 5.6251 3.4814 13 1 6.2922 6.3515 3.6679 14 6 4.0912 6.1283 3.8001 15 6 3.8037 5.9165 5.2848 16 7 3.9464 4.4898 5.5869 17 6 2.9018 3.8071 6.1506 18 1 2.7794 2.7516 5.9574 19 6 2.0002 4.4716 6.9706 20 7 2.3686 5.5652 7.6036 21 14 0.2639 3.8139 7.1756 22 1 0.1027 2.5806 6.3640 23 1 -0.7104 4.8377 6.7197 24 1 0.0192 3.5000 8.6063 25 6 5.1888 3.7904 5.2867 26 6 5.7983 4.2125 3.9704 27 1 6.8696 4.0127 3.9505 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3854 2.1161 0.2660 32 1 2.4755 1.4869 -0.9927 33 1 5.6653 3.2632 0.1022 34 1 5.6943 1.4927 0.2848 35 1 4.6777 2.2418 -0.9697 36 1 6.5593 4.8909 1.6802 37 1 4.8197 5.3256 1.3951 38 1 4.0211 7.1897 3.5623 39 1 3.3638 5.5729 3.2080 40 1 2.7878 6.2403 5.5107 41 1 4.5140 6.4910 5.8795 42 1 3.2916 5.8609 7.5640 43 1 5.9046 3.9881 6.0846 44 1 4.9898 2.7192 5.2542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222069399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:32 Heat of formation + Delta-G solvation = -14.389832 kcal Electronic energy + Delta-G solvation = -25094.826220 eV Core-core repulsion = 21628.308880 eV Total energy + Delta-G solvation = -3466.517340 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.11699 -40.06585 -38.48955 -37.42916 -35.03957 -33.80315 -32.72338 -32.45055 -29.95996 -28.51979 -27.24429 -25.78983 -25.23954 -24.03590 -22.67833 -21.47126 -20.90081 -19.75123 -18.90501 -18.11686 -17.84219 -17.33318 -16.81026 -16.63902 -16.11884 -15.93623 -15.61489 -15.44569 -15.13364 -14.82228 -14.48750 -14.18400 -13.97129 -13.81126 -13.53915 -13.47688 -13.26724 -13.11780 -12.82598 -12.64874 -12.49471 -12.41732 -12.03550 -11.98810 -11.87218 -11.79037 -11.51144 -11.14958 -11.06678 -10.57664 -10.51409 -10.19557 -9.64269 -8.92266 -8.29195 -5.44281 1.13441 1.47725 1.55342 1.64954 1.69649 1.75070 2.57175 2.83582 3.12496 3.32710 3.42117 3.53994 3.77171 3.86209 3.93699 4.07104 4.09882 4.14784 4.28106 4.29672 4.33427 4.45668 4.52503 4.54125 4.64377 4.65763 4.67834 4.75294 4.85907 4.91979 4.96975 5.01709 5.10293 5.13488 5.15331 5.26526 5.55972 5.59317 5.66489 5.82890 6.09452 6.38187 6.83546 7.08365 7.22425 7.79008 8.13649 8.93866 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.006143 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.008768 B = 4556.819364 C = 6268.844009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.174 4.174 3 C 0.082 3.918 4 O -0.391 6.391 5 C 0.082 3.918 6 H 0.100 0.900 7 C -0.154 4.154 8 C 0.528 3.472 9 O -0.582 6.582 10 N -0.637 5.637 11 C 0.110 3.890 12 C -0.103 4.103 13 H 0.137 0.863 14 C -0.106 4.106 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.348 4.348 18 H 0.016 0.984 19 C -0.066 4.066 20 N -0.934 5.934 21 Si 1.109 2.891 22 H -0.294 1.294 23 H -0.274 1.274 24 H -0.284 1.284 25 C 0.144 3.856 26 C 0.116 3.884 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.040 0.960 40 H 0.043 0.957 41 H 0.016 0.984 42 H 0.257 0.743 43 H 0.011 0.989 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 0.991 -22.068 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.007 3.993 4 O -0.310 6.310 5 C 0.021 3.979 6 H 0.117 0.883 7 C -0.212 4.212 8 C 0.318 3.682 9 O -0.461 6.461 10 N -0.374 5.374 11 C -0.011 4.011 12 C -0.122 4.122 13 H 0.155 0.845 14 C -0.145 4.145 15 C 0.027 3.973 16 N -0.329 5.329 17 C -0.478 4.478 18 H 0.034 0.966 19 C -0.263 4.263 20 N -0.576 5.576 21 Si 0.935 3.065 22 H -0.220 1.220 23 H -0.200 1.200 24 H -0.210 1.210 25 C 0.018 3.982 26 C 0.012 3.988 27 H 0.130 0.870 28 H 0.138 0.862 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.147 0.853 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.067 0.933 43 H 0.028 0.972 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.290 0.436 -20.920 21.360 hybrid contribution 1.301 -0.807 0.072 1.533 sum 5.591 -0.371 -20.848 21.588 Atomic orbital electron populations 1.24071 0.95196 1.03437 0.98020 1.22796 0.96291 0.98026 1.02123 1.21855 0.88164 0.96493 0.92818 1.88043 1.45370 1.35656 1.61976 1.21906 0.95146 0.89476 0.91383 0.88281 1.22168 0.96490 1.03892 0.98624 1.20640 0.77927 0.79648 0.89963 1.90703 1.59515 1.42318 1.53590 1.49552 1.53200 1.18454 1.16180 1.23637 1.02673 0.79189 0.95603 1.22803 0.98584 0.94627 0.96156 0.84532 1.21654 0.95399 1.01190 0.96297 1.20693 0.98825 0.83622 0.94161 1.43699 1.11274 1.06717 1.71234 1.20013 1.07274 0.94467 1.26087 0.96561 1.26966 1.07929 0.98321 0.93119 1.70832 1.19708 1.27241 1.39777 0.82932 0.72468 0.74931 0.76217 1.22011 1.19961 1.21005 1.20246 0.87848 0.95617 0.94520 1.22510 0.96956 0.93388 0.85979 0.87027 0.86247 0.87644 0.86859 0.92671 0.89374 0.88581 0.92797 0.88814 0.85345 0.88381 0.88804 0.94154 0.93831 0.96557 0.93306 0.97155 0.95610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 14.31 67.78 0.97 -2.41 16 2 C -0.17 -4.05 9.89 25.65 0.25 -3.80 16 3 C 0.08 1.95 6.16 71.24 0.44 2.39 16 4 O -0.39 -12.94 9.51 -129.99 -1.24 -14.17 16 5 C 0.08 2.29 3.00 29.85 0.09 2.38 16 6 H 0.10 2.34 7.79 -2.39 -0.02 2.32 16 7 C -0.15 -2.80 9.45 71.98 0.68 -2.12 16 8 C 0.53 20.45 7.36 87.66 0.65 21.10 16 9 O -0.58 -30.53 15.75 15.96 0.25 -30.28 16 10 N -0.64 -20.23 3.31 -866.22 -2.86 -23.09 16 11 C 0.11 2.01 6.52 81.09 0.53 2.53 16 12 C -0.10 -2.55 4.57 -10.60 -0.05 -2.60 16 13 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 14 C -0.11 -3.52 5.68 30.52 0.17 -3.35 16 15 C 0.15 7.12 4.63 86.27 0.40 7.52 16 16 N -0.60 -32.79 2.86 -708.17 -2.02 -34.82 16 17 C -0.35 -21.97 9.39 84.03 0.79 -21.18 16 18 H 0.02 1.14 7.90 -2.91 -0.02 1.12 16 19 C -0.07 -4.07 4.63 84.86 0.39 -3.67 16 20 N -0.93 -58.69 12.38 21.65 0.27 -58.42 16 21 Si 1.11 56.02 29.99 68.60 2.06 58.08 16 22 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 23 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 25 C 0.14 6.86 6.15 85.90 0.53 7.39 16 26 C 0.12 3.84 4.03 38.67 0.16 3.99 16 27 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.12 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.11 1.91 7.90 -2.91 -0.02 1.88 16 30 H 0.11 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.06 1.28 7.80 -2.39 -0.02 1.26 16 32 H 0.09 1.48 7.87 -2.39 -0.02 1.46 16 33 H 0.10 1.24 6.88 -2.39 -0.02 1.22 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.21 7.87 -2.39 -0.02 1.19 16 36 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.42 8.05 -2.38 -0.02 1.40 16 38 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.04 1.49 7.68 -2.38 -0.02 1.47 16 40 H 0.04 2.36 6.18 -2.39 -0.01 2.34 16 41 H 0.02 0.76 7.95 -2.39 -0.02 0.74 16 42 H 0.26 16.29 6.82 -92.71 -0.63 15.66 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.03 1.44 6.46 -2.39 -0.02 1.42 16 Total: -1.00 -88.92 353.01 3.55 -85.36 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.10 Total: 9.15 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 6.00 Total: 8.18 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -4.62 Total: -116.33 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -0.98 Total: -44.45 kcal Atomic # 14 Polarization: 56.02 SS G_CDS: 2.06 Total: 58.08 kcal Total: -88.92 3.55 -85.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222069399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.973 kcal (2) G-P(sol) polarization free energy of solvation -88.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds