Wall clock time and date at job start Tue Mar 31 2020 07:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99959 * 2 1 4 4 O 1.42899 * 109.46903 * 135.00271 * 3 2 1 5 5 C 1.42903 * 113.99903 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46757 * 329.99560 * 5 4 3 7 7 C 1.53001 * 109.47444 * 89.99399 * 5 4 3 8 8 C 1.50700 * 109.47164 * 209.99947 * 5 4 3 9 9 O 1.21285 * 120.00100 * 354.99455 * 8 5 4 10 10 N 1.34774 * 120.00115 * 174.99824 * 8 5 4 11 11 C 1.47293 * 136.54399 * 359.62414 * 10 8 5 12 12 C 1.54376 * 87.49872 * 151.46726 * 11 10 8 13 13 H 1.08998 * 114.92471 * 141.75150 * 12 11 10 14 14 C 1.53066 * 112.44751 * 274.15430 * 12 11 10 15 15 C 1.53141 * 109.21499 * 142.78083 * 14 12 11 16 16 N 1.46535 * 108.25260 * 301.59302 * 15 14 12 17 17 C 1.36943 * 119.73583 * 236.43906 * 16 15 14 18 18 H 1.07997 * 119.99921 * 26.56744 * 17 16 15 19 19 C 1.38812 * 119.99871 * 206.56296 * 17 16 15 20 20 N 1.31620 * 120.00144 * 12.76904 * 19 17 16 21 21 Si 1.86799 * 119.99770 * 192.75807 * 19 17 16 22 22 H 1.48502 * 109.46965 * 60.00869 * 21 19 17 23 23 H 1.48499 * 109.47013 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47679 * 300.00406 * 21 19 17 25 25 C 1.44777 * 120.89627 * 55.60199 * 16 15 14 26 26 C 1.46467 * 136.54498 * 179.97438 * 10 8 5 27 27 H 1.09003 * 111.44316 * 96.34235 * 26 10 8 28 28 H 1.08005 * 119.99791 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00194 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99791 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47382 * 14.99765 * 3 2 1 32 32 H 1.09000 * 109.46989 * 254.99805 * 3 2 1 33 33 H 1.09000 * 109.46537 * 60.00078 * 7 5 4 34 34 H 1.08996 * 109.46779 * 300.00280 * 7 5 4 35 35 H 1.08994 * 109.46927 * 179.97438 * 7 5 4 36 36 H 1.09000 * 113.52923 * 266.09459 * 11 10 8 37 37 H 1.09004 * 113.52630 * 36.72438 * 11 10 8 38 38 H 1.08999 * 109.51419 * 262.71045 * 14 12 11 39 39 H 1.09002 * 109.51088 * 22.86314 * 14 12 11 40 40 H 1.09003 * 109.70465 * 61.28062 * 15 14 12 41 41 H 1.09000 * 109.71070 * 181.89716 * 15 14 12 42 42 H 0.96991 * 119.99932 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.76545 * 199.61560 * 25 16 15 44 44 H 1.08996 * 107.24591 * 81.74386 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9077 2.4352 1.0328 6 1 3.9127 2.9319 0.0626 7 6 3.3030 3.3708 2.0816 8 6 5.3201 2.0862 1.4258 9 8 5.6062 0.9414 1.7065 10 7 6.2654 3.0460 1.4653 11 6 6.3306 4.4938 1.2025 12 6 7.4789 4.5604 2.2322 13 1 8.2866 5.2461 1.9758 14 6 6.9691 4.7138 3.6672 15 6 7.8615 3.9001 4.6089 16 7 7.8315 2.5009 4.1746 17 6 7.4485 1.5245 5.0550 18 1 6.7860 1.7649 5.8734 19 6 7.9118 0.2257 4.8957 20 7 8.9034 -0.0222 4.0664 21 14 7.1281 -1.1702 5.8583 22 1 5.6859 -1.2592 5.5155 23 1 7.7995 -2.4486 5.5117 24 1 7.2761 -0.9125 7.3132 25 6 8.1846 2.1356 2.8189 26 6 7.6932 3.1197 1.7832 27 1 8.3051 3.0686 0.8826 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4755 1.4867 -0.9926 33 1 3.2979 2.8741 3.0518 34 1 2.2814 3.6232 1.7973 35 1 3.8990 4.2813 2.1430 36 1 6.6422 4.7381 0.1870 37 1 5.4350 5.0330 1.5114 38 1 6.9997 5.7649 3.9541 39 1 5.9442 4.3481 3.7304 40 1 8.8833 4.2771 4.5640 41 1 7.4855 3.9765 5.6291 42 1 9.2274 -0.9297 3.9554 43 1 7.7817 1.1500 2.5859 44 1 9.2725 2.0880 2.7700 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222069404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:35 Heat of formation + Delta-G solvation = 16.525043 kcal Electronic energy + Delta-G solvation = -25247.606581 eV Core-core repulsion = 21782.429810 eV Total energy + Delta-G solvation = -3465.176770 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56963 -38.69937 -36.95597 -35.22524 -34.07257 -32.16952 -31.38427 -30.08986 -28.56860 -26.90848 -26.26416 -24.02120 -23.71334 -22.59781 -20.99479 -20.25687 -19.62047 -17.73581 -17.21976 -16.80520 -16.03900 -15.69425 -15.65138 -15.17178 -14.61998 -14.29734 -14.03752 -13.61734 -13.28508 -13.24804 -13.06481 -12.82855 -12.61244 -12.38386 -12.22204 -12.11595 -11.79769 -11.42066 -11.37583 -11.07826 -10.89066 -10.60435 -10.57401 -10.42984 -10.15444 -10.09199 -9.84467 -9.73127 -9.47999 -9.40188 -8.77218 -8.22249 -8.07698 -6.49968 -5.59219 -3.03871 2.00061 3.05171 3.22244 3.52604 3.58677 3.63780 3.96299 4.63594 4.65035 4.69999 4.84729 4.94706 4.98550 5.09413 5.21056 5.27807 5.33437 5.36829 5.49890 5.53820 5.63752 5.65205 5.70015 5.76009 5.76980 5.92064 6.11595 6.16167 6.21429 6.33744 6.42557 6.43220 6.50501 6.55268 6.62476 6.81593 7.03416 7.16256 7.57427 7.83780 8.00449 8.35681 8.65332 8.83528 9.43733 10.07191 10.53190 11.48471 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.006113 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.550943 B = 4579.114164 C = 6082.415058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 C 0.085 3.915 4 O -0.350 6.350 5 C 0.080 3.920 6 H 0.076 0.924 7 C -0.168 4.168 8 C 0.539 3.461 9 O -0.494 6.494 10 N -0.633 5.633 11 C 0.091 3.909 12 C -0.112 4.112 13 H 0.090 0.910 14 C -0.116 4.116 15 C 0.150 3.850 16 N -0.584 5.584 17 C -0.256 4.256 18 H 0.060 0.940 19 C 0.014 3.986 20 N -0.904 5.904 21 Si 0.901 3.099 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.169 3.831 26 C 0.120 3.880 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.020 0.980 41 H 0.056 0.944 42 H 0.252 0.748 43 H 0.101 0.899 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 11.451 -10.136 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.162 4.162 3 C 0.009 3.991 4 O -0.269 6.269 5 C 0.018 3.982 6 H 0.094 0.906 7 C -0.226 4.226 8 C 0.326 3.674 9 O -0.366 6.366 10 N -0.372 5.372 11 C -0.032 4.032 12 C -0.131 4.131 13 H 0.109 0.891 14 C -0.155 4.155 15 C 0.023 3.977 16 N -0.306 5.306 17 C -0.385 4.385 18 H 0.078 0.922 19 C -0.185 4.185 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.042 3.958 26 C 0.016 3.984 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.119 0.881 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.992 10.257 -9.911 18.007 hybrid contribution -0.550 -0.498 0.032 0.742 sum -11.542 9.759 -9.879 18.056 Atomic orbital electron populations 1.23789 0.95459 1.02101 1.00926 1.22774 0.95594 0.98424 0.99378 1.21628 0.89182 0.95949 0.92343 1.88132 1.43656 1.35340 1.59723 1.21821 0.90201 0.86841 0.99325 0.90598 1.22234 1.00747 0.99250 1.00356 1.19566 0.84872 0.84351 0.78606 1.90809 1.80841 1.18938 1.45962 1.49410 1.10975 1.08499 1.68330 1.23444 0.99014 0.81853 0.98905 1.22776 0.97438 0.97230 0.95677 0.89144 1.21829 1.00866 0.99116 0.93688 1.20708 0.95630 0.85797 0.95552 1.43213 1.79348 1.01106 1.06918 1.19029 1.22292 0.88944 1.08248 0.92242 1.24952 0.96279 0.98373 0.98882 1.69987 1.25942 1.19476 1.39427 0.86386 0.79391 0.81924 0.79142 1.20886 1.21687 1.21174 1.20035 0.97059 0.96867 0.81834 1.22670 0.80980 0.95862 0.98902 0.91046 0.88559 0.87825 0.86333 0.92813 0.92419 0.90748 0.91945 0.90881 0.90485 0.91004 0.92677 0.92073 0.96260 0.92596 0.93781 0.88093 0.95405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 14.31 29.01 0.42 -1.36 16 2 C -0.14 -1.71 9.89 -36.03 -0.36 -2.06 16 3 C 0.09 1.05 6.16 36.00 0.22 1.27 16 4 O -0.35 -6.05 9.51 -55.09 -0.52 -6.58 16 5 C 0.08 1.24 2.99 -27.88 -0.08 1.16 16 6 H 0.08 0.94 7.79 -51.93 -0.40 0.54 16 7 C -0.17 -2.25 9.45 37.16 0.35 -1.90 16 8 C 0.54 11.10 7.36 -10.99 -0.08 11.02 16 9 O -0.49 -13.15 15.75 -14.31 -0.23 -13.38 16 10 N -0.63 -11.47 3.33 -187.51 -0.62 -12.10 16 11 C 0.09 1.16 7.53 -11.38 -0.09 1.08 16 12 C -0.11 -1.67 4.52 -90.16 -0.41 -2.08 16 13 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 14 C -0.12 -1.89 5.75 -26.62 -0.15 -2.04 16 15 C 0.15 3.11 6.47 -3.95 -0.03 3.08 16 16 N -0.58 -15.15 3.01 -175.64 -0.53 -15.68 16 17 C -0.26 -7.47 9.50 -15.06 -0.14 -7.62 16 18 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 19 C 0.01 0.42 4.97 -17.43 -0.09 0.33 16 20 N -0.90 -28.05 10.93 55.49 0.61 -27.44 16 21 Si 0.90 24.02 29.57 -169.99 -5.03 18.99 16 22 H -0.28 -7.71 7.11 56.52 0.40 -7.31 16 23 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 C 0.17 4.27 4.51 -5.93 -0.03 4.24 16 26 C 0.12 2.30 4.03 -77.70 -0.31 1.99 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.10 0.78 7.90 -52.48 -0.41 0.37 16 29 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.05 0.55 7.59 -51.93 -0.39 0.16 16 32 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 35 H 0.07 0.87 5.79 -51.93 -0.30 0.57 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.78 6.11 -51.93 -0.32 0.46 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.09 7.76 -51.93 -0.40 0.69 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.15 7.88 -51.93 -0.41 0.74 16 42 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.10 3.04 5.06 -51.93 -0.26 2.78 16 44 H 0.03 0.76 7.92 -51.93 -0.41 0.35 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -36.28 351.73 -8.87 -45.15 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.07 Total: -1.38 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.77 Total: 7.11 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.55 Total: -55.21 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.75 Total: -19.96 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.03 Total: 18.99 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.28 -8.87 -45.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222069404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.672 kcal (2) G-P(sol) polarization free energy of solvation -36.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds