Wall clock time and date at job start Tue Mar 31 2020 07:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99959 * 2 1 4 4 O 1.42899 * 109.46903 * 135.00271 * 3 2 1 5 5 C 1.42903 * 113.99903 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46757 * 329.99560 * 5 4 3 7 7 C 1.53001 * 109.47444 * 89.99399 * 5 4 3 8 8 C 1.50700 * 109.47164 * 209.99947 * 5 4 3 9 9 O 1.21285 * 120.00100 * 354.99455 * 8 5 4 10 10 N 1.34774 * 120.00115 * 174.99824 * 8 5 4 11 11 C 1.47293 * 136.54399 * 359.62414 * 10 8 5 12 12 C 1.54376 * 87.49872 * 151.46726 * 11 10 8 13 13 H 1.08998 * 114.92471 * 141.75150 * 12 11 10 14 14 C 1.53066 * 112.44751 * 274.15430 * 12 11 10 15 15 C 1.53141 * 109.21499 * 142.78083 * 14 12 11 16 16 N 1.46535 * 108.25260 * 301.59302 * 15 14 12 17 17 C 1.36943 * 119.73583 * 236.43906 * 16 15 14 18 18 H 1.07997 * 119.99921 * 26.56744 * 17 16 15 19 19 C 1.38812 * 119.99871 * 206.56296 * 17 16 15 20 20 N 1.31620 * 120.00144 * 12.76904 * 19 17 16 21 21 Si 1.86799 * 119.99770 * 192.75807 * 19 17 16 22 22 H 1.48502 * 109.46965 * 60.00869 * 21 19 17 23 23 H 1.48499 * 109.47013 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47679 * 300.00406 * 21 19 17 25 25 C 1.44777 * 120.89627 * 55.60199 * 16 15 14 26 26 C 1.46467 * 136.54498 * 179.97438 * 10 8 5 27 27 H 1.09003 * 111.44316 * 96.34235 * 26 10 8 28 28 H 1.08005 * 119.99791 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00194 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99791 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47382 * 14.99765 * 3 2 1 32 32 H 1.09000 * 109.46989 * 254.99805 * 3 2 1 33 33 H 1.09000 * 109.46537 * 60.00078 * 7 5 4 34 34 H 1.08996 * 109.46779 * 300.00280 * 7 5 4 35 35 H 1.08994 * 109.46927 * 179.97438 * 7 5 4 36 36 H 1.09000 * 113.52923 * 266.09459 * 11 10 8 37 37 H 1.09004 * 113.52630 * 36.72438 * 11 10 8 38 38 H 1.08999 * 109.51419 * 262.71045 * 14 12 11 39 39 H 1.09002 * 109.51088 * 22.86314 * 14 12 11 40 40 H 1.09003 * 109.70465 * 61.28062 * 15 14 12 41 41 H 1.09000 * 109.71070 * 181.89716 * 15 14 12 42 42 H 0.96991 * 119.99932 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.76545 * 199.61560 * 25 16 15 44 44 H 1.08996 * 107.24591 * 81.74386 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9077 2.4352 1.0328 6 1 3.9127 2.9319 0.0626 7 6 3.3030 3.3708 2.0816 8 6 5.3201 2.0862 1.4258 9 8 5.6062 0.9414 1.7065 10 7 6.2654 3.0460 1.4653 11 6 6.3306 4.4938 1.2025 12 6 7.4789 4.5604 2.2322 13 1 8.2866 5.2461 1.9758 14 6 6.9691 4.7138 3.6672 15 6 7.8615 3.9001 4.6089 16 7 7.8315 2.5009 4.1746 17 6 7.4485 1.5245 5.0550 18 1 6.7860 1.7649 5.8734 19 6 7.9118 0.2257 4.8957 20 7 8.9034 -0.0222 4.0664 21 14 7.1281 -1.1702 5.8583 22 1 5.6859 -1.2592 5.5155 23 1 7.7995 -2.4486 5.5117 24 1 7.2761 -0.9125 7.3132 25 6 8.1846 2.1356 2.8189 26 6 7.6932 3.1197 1.7832 27 1 8.3051 3.0686 0.8826 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4755 1.4867 -0.9926 33 1 3.2979 2.8741 3.0518 34 1 2.2814 3.6232 1.7973 35 1 3.8990 4.2813 2.1430 36 1 6.6422 4.7381 0.1870 37 1 5.4350 5.0330 1.5114 38 1 6.9997 5.7649 3.9541 39 1 5.9442 4.3481 3.7304 40 1 8.8833 4.2771 4.5640 41 1 7.4855 3.9765 5.6291 42 1 9.2274 -0.9297 3.9554 43 1 7.7817 1.1500 2.5859 44 1 9.2725 2.0880 2.7700 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222069404.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:35 Heat of formation + Delta-G solvation = -9.074750 kcal Electronic energy + Delta-G solvation = -25248.716671 eV Core-core repulsion = 21782.429810 eV Total energy + Delta-G solvation = -3466.286861 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.96774 -39.97031 -38.39762 -37.10513 -35.00313 -34.01883 -32.64361 -31.90117 -30.09362 -28.59187 -27.17649 -25.72873 -25.17200 -24.04662 -22.57361 -21.31999 -20.83520 -19.49282 -18.61803 -18.05866 -17.59544 -17.28920 -16.90704 -16.55769 -16.12007 -15.71750 -15.69016 -15.21817 -14.77254 -14.62882 -14.48030 -14.13681 -14.01490 -13.75087 -13.58758 -13.33810 -13.12426 -13.03559 -12.76185 -12.66921 -12.50547 -12.27199 -12.23658 -11.97110 -11.86743 -11.72498 -11.46074 -11.16611 -11.00277 -10.62246 -10.32099 -10.17710 -9.51377 -8.64056 -7.85782 -5.31977 1.15798 1.31660 1.40658 1.43616 1.74814 1.80963 2.46688 2.91217 3.29286 3.44677 3.47420 3.75681 3.82664 3.95343 4.01736 4.05744 4.17922 4.25119 4.35219 4.41388 4.50752 4.53260 4.57279 4.67522 4.72508 4.75978 4.81386 4.85227 4.95758 4.96556 5.08949 5.13398 5.19998 5.34151 5.44854 5.55991 5.62159 5.67100 5.72536 5.83007 6.17162 6.39857 6.97204 7.20239 7.35844 7.98981 8.34094 9.17389 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.006113 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.550943 B = 4579.114164 C = 6082.415058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.183 4.183 3 C 0.083 3.917 4 O -0.396 6.396 5 C 0.086 3.914 6 H 0.118 0.882 7 C -0.159 4.159 8 C 0.522 3.478 9 O -0.579 6.579 10 N -0.638 5.638 11 C 0.107 3.893 12 C -0.100 4.100 13 H 0.131 0.869 14 C -0.105 4.105 15 C 0.139 3.861 16 N -0.601 5.601 17 C -0.258 4.258 18 H 0.058 0.942 19 C -0.044 4.044 20 N -0.932 5.932 21 Si 0.954 3.046 22 H -0.296 1.296 23 H -0.292 1.292 24 H -0.263 1.263 25 C 0.183 3.817 26 C 0.102 3.898 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.044 0.956 40 H 0.027 0.973 41 H 0.050 0.950 42 H 0.243 0.757 43 H 0.043 0.957 44 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.346 15.805 -11.424 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.201 4.201 3 C 0.007 3.993 4 O -0.315 6.315 5 C 0.026 3.974 6 H 0.136 0.864 7 C -0.216 4.216 8 C 0.312 3.688 9 O -0.457 6.457 10 N -0.374 5.374 11 C -0.013 4.013 12 C -0.119 4.119 13 H 0.149 0.851 14 C -0.144 4.144 15 C 0.015 3.985 16 N -0.325 5.325 17 C -0.389 4.389 18 H 0.075 0.925 19 C -0.239 4.239 20 N -0.579 5.579 21 Si 0.783 3.217 22 H -0.224 1.224 23 H -0.219 1.219 24 H -0.188 1.188 25 C 0.057 3.943 26 C -0.002 4.002 27 H 0.107 0.893 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges -13.251 14.719 -11.198 22.752 hybrid contribution 0.142 -1.820 0.446 1.879 sum -13.110 12.899 -10.753 21.304 Atomic orbital electron populations 1.24055 0.94508 1.03746 0.97231 1.22773 0.96619 0.97830 1.02889 1.21870 0.88512 0.96833 0.92066 1.88100 1.45164 1.36826 1.61405 1.21892 0.86864 0.86852 1.01812 0.86429 1.22203 1.03061 0.98789 0.97561 1.20731 0.87167 0.83631 0.77289 1.90769 1.82514 1.22544 1.49899 1.49595 1.09909 1.10937 1.66993 1.23711 0.99359 0.77908 1.00351 1.22824 0.99656 0.93963 0.95457 0.85089 1.21713 0.98485 1.00692 0.93472 1.20981 0.97224 0.83568 0.96774 1.43464 1.79289 1.02786 1.06912 1.19342 1.21214 0.90091 1.08261 0.92477 1.25651 0.97228 1.00604 1.00456 1.70162 1.27524 1.18976 1.41214 0.85547 0.77436 0.79491 0.79265 1.22380 1.21854 1.18779 1.19594 0.94622 0.96548 0.83565 1.22716 0.82395 0.97292 0.97839 0.89302 0.86246 0.86718 0.88713 0.89984 0.91146 0.94590 0.88441 0.88789 0.86348 0.87771 0.87808 0.93690 0.95457 0.93117 0.94747 0.93817 0.99243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 14.31 67.78 0.97 -1.73 16 2 C -0.18 -4.30 9.89 25.65 0.25 -4.04 16 3 C 0.08 1.90 6.16 71.23 0.44 2.34 16 4 O -0.40 -13.72 9.51 -129.99 -1.24 -14.96 16 5 C 0.09 2.56 2.99 29.85 0.09 2.64 16 6 H 0.12 2.42 7.79 -2.39 -0.02 2.41 16 7 C -0.16 -3.76 9.45 71.98 0.68 -3.08 16 8 C 0.52 21.78 7.36 87.66 0.65 22.43 16 9 O -0.58 -33.16 15.75 15.94 0.25 -32.91 16 10 N -0.64 -22.09 3.33 -865.54 -2.88 -24.97 16 11 C 0.11 2.12 7.53 81.19 0.61 2.73 16 12 C -0.10 -2.53 4.52 -10.49 -0.05 -2.58 16 13 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 14 C -0.10 -3.02 5.75 30.66 0.18 -2.85 16 15 C 0.14 5.65 6.47 86.42 0.56 6.21 16 16 N -0.60 -32.26 3.01 -709.60 -2.14 -34.40 16 17 C -0.26 -15.81 9.50 84.03 0.80 -15.01 16 18 H 0.06 3.43 7.83 -2.91 -0.02 3.41 16 19 C -0.04 -2.79 4.97 84.86 0.42 -2.37 16 20 N -0.93 -61.83 10.93 21.65 0.24 -61.59 16 21 Si 0.95 51.99 29.57 68.60 2.03 54.02 16 22 H -0.30 -16.67 7.11 99.48 0.71 -15.96 16 23 H -0.29 -15.85 7.11 99.48 0.71 -15.14 16 24 H -0.26 -13.20 7.11 99.48 0.71 -12.49 16 25 C 0.18 9.78 4.51 86.08 0.39 10.17 16 26 C 0.10 3.84 4.03 38.68 0.16 3.99 16 27 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.12 1.48 7.90 -2.91 -0.02 1.46 16 29 H 0.11 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.09 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.08 1.37 7.59 -2.39 -0.02 1.35 16 32 H 0.07 1.38 8.09 -2.39 -0.02 1.36 16 33 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 1.62 7.87 -2.39 -0.02 1.60 16 35 H 0.09 1.77 5.79 -2.39 -0.01 1.76 16 36 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.48 6.11 -2.38 -0.01 1.47 16 38 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.04 1.46 7.76 -2.39 -0.02 1.44 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 2.06 7.88 -2.39 -0.02 2.04 16 42 H 0.24 15.86 8.31 -92.71 -0.77 15.09 16 43 H 0.04 2.84 5.06 -2.39 -0.01 2.83 16 44 H -0.01 -0.60 7.92 -2.39 -0.02 -0.62 16 Total: -1.00 -92.03 351.73 3.37 -88.66 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.97 Total: 7.30 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 6.14 Total: 18.86 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -4.78 Total: -120.96 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.98 Total: -47.87 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.03 Total: 54.02 kcal Total: -92.03 3.37 -88.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222069404.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.583 kcal (2) G-P(sol) polarization free energy of solvation -92.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds