Wall clock time and date at job start Tue Mar 31 2020 07:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47305 * 263.30595 * 3 2 1 5 5 C 1.42897 * 114.00241 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47556 * 30.00053 * 5 4 3 7 7 C 1.53002 * 109.46936 * 270.00310 * 5 4 3 8 8 C 1.50701 * 109.47138 * 150.00353 * 5 4 3 9 9 O 1.21280 * 120.00362 * 4.99795 * 8 5 4 10 10 N 1.34782 * 119.99799 * 185.00038 * 8 5 4 11 11 C 1.46500 * 119.99842 * 179.97438 * 10 8 5 12 12 C 1.53005 * 109.46921 * 179.97438 * 11 10 8 13 13 C 1.53035 * 109.46249 * 295.02809 * 12 11 10 14 14 C 1.53188 * 109.31545 * 178.60351 * 13 12 11 15 15 N 1.46928 * 108.76596 * 54.65080 * 14 13 12 16 16 C 1.36937 * 120.63018 * 126.36491 * 15 14 13 17 17 H 1.07995 * 120.00352 * 208.02231 * 16 15 14 18 18 C 1.38810 * 120.00013 * 28.02358 * 16 15 14 19 19 N 1.31625 * 120.00223 * 17.52366 * 18 16 15 20 20 Si 1.86802 * 120.00261 * 197.52913 * 18 16 15 21 21 H 1.48495 * 109.47401 * 94.06329 * 20 18 16 22 22 H 1.48504 * 109.46951 * 214.06757 * 20 18 16 23 23 H 1.48499 * 109.46714 * 334.06421 * 20 18 16 24 24 C 1.46921 * 118.73894 * 306.38976 * 15 14 13 25 25 C 1.53041 * 109.45725 * 174.97167 * 12 11 10 26 26 H 4.38446 * 5.44460 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.47761 * 23.31273 * 3 2 1 28 28 H 1.09004 * 109.46847 * 143.30803 * 3 2 1 29 29 H 1.08997 * 109.47288 * 59.99745 * 7 5 4 30 30 H 1.09007 * 109.47115 * 180.02562 * 7 5 4 31 31 H 1.09003 * 109.46829 * 299.99658 * 7 5 4 32 32 H 0.97001 * 120.00037 * 359.97438 * 10 8 5 33 33 H 1.08996 * 109.47403 * 299.99817 * 11 10 8 34 34 H 1.08997 * 109.47047 * 59.99687 * 11 10 8 35 35 H 1.09001 * 109.45662 * 55.00140 * 12 11 10 36 36 H 1.09002 * 109.49831 * 298.56568 * 13 12 11 37 37 H 1.09007 * 109.49693 * 58.66192 * 13 12 11 38 38 H 1.09000 * 109.59774 * 294.86585 * 14 13 12 39 39 H 1.08998 * 109.70698 * 174.50926 * 14 13 12 40 40 H 0.97000 * 120.00035 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.58754 * 293.81649 * 24 15 14 42 42 H 1.09000 * 109.70597 * 173.46303 * 24 15 14 43 43 H 1.09002 * 109.49824 * 301.33926 * 25 12 11 44 44 H 1.09000 * 109.49667 * 61.40467 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.1579 1.3381 5 6 4.5468 0.1723 1.4501 6 1 4.9790 0.5831 0.5376 7 6 5.0564 -1.2553 1.6579 8 6 4.9497 1.0256 2.6251 9 8 4.1010 1.4938 3.3539 10 7 6.2534 1.2684 2.8660 11 6 6.6451 2.0983 4.0079 12 6 8.1700 2.2149 4.0544 13 6 8.7787 0.8374 4.3264 14 6 10.3063 0.9517 4.3376 15 7 10.6958 1.9854 5.3064 16 6 11.5978 1.7073 6.2985 17 1 11.5573 2.2482 7.2323 18 6 12.5643 0.7301 6.1039 19 7 12.8462 0.3164 4.8865 20 14 13.4649 0.0021 7.5696 21 1 12.7769 -1.2392 8.0067 22 1 14.8629 -0.3166 7.1831 23 1 13.4709 0.9834 8.6841 24 6 10.0988 3.3229 5.1908 25 6 8.5736 3.1819 5.1698 26 1 -1.0500 -0.0002 0.0000 27 1 3.0099 -0.9428 -0.4067 28 1 3.0090 0.8249 -0.6141 29 1 4.7650 -1.8725 0.8081 30 1 6.1431 -1.2443 1.7438 31 1 4.6244 -1.6661 2.5705 32 1 6.9323 0.8936 2.2833 33 1 6.2075 3.0910 3.9027 34 1 6.2878 1.6397 4.9299 35 1 8.5347 2.5907 3.0984 36 1 8.4340 0.4720 5.2938 37 1 8.4717 0.1431 3.5442 38 1 10.6593 1.2300 3.3446 39 1 10.7442 -0.0037 4.6266 40 1 13.5213 -0.3667 4.7506 41 1 10.4350 3.7945 4.2674 42 1 10.3976 3.9336 6.0428 43 1 8.1206 4.1565 4.9880 44 1 8.2303 2.7944 6.1291 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223174802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:38 Heat of formation + Delta-G solvation = -14.067895 kcal Electronic energy + Delta-G solvation = -23418.532102 eV Core-core repulsion = 19952.028722 eV Total energy + Delta-G solvation = -3466.503380 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.12337 -38.36072 -37.57332 -34.95322 -33.80307 -33.00338 -31.62483 -30.44688 -29.86353 -27.44747 -26.94146 -24.64335 -23.50814 -22.24637 -21.08736 -20.45525 -19.18734 -18.90295 -17.43633 -17.19045 -16.74307 -16.08072 -15.52887 -15.09469 -14.96029 -14.79703 -14.09997 -13.88481 -13.54091 -13.51210 -13.35438 -13.08230 -12.77936 -12.53329 -12.40080 -12.32017 -11.85649 -11.71083 -11.40924 -11.01377 -10.99715 -10.87831 -10.74899 -10.53504 -10.25754 -10.23133 -10.10875 -9.93127 -9.68948 -9.52269 -9.43619 -9.00244 -8.48526 -6.69084 -5.81039 -3.22861 2.06498 2.47397 2.56835 2.99895 3.36640 3.44045 3.45195 3.71242 4.21176 4.47906 4.48797 4.61984 4.71163 4.80928 5.00966 5.08905 5.23056 5.28721 5.34554 5.37770 5.41290 5.56240 5.56624 5.81831 5.86073 5.90810 6.03939 6.13348 6.26698 6.39054 6.49852 6.54430 6.64883 6.68443 6.74144 6.80221 6.96969 7.23575 7.33161 7.48908 7.61724 7.78523 8.19647 8.43512 9.19901 9.83404 10.39958 11.27505 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.002636 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.604370 B =10619.473003 C =11099.267859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.192 4.192 3 C 0.170 3.830 4 O -0.352 6.352 5 C 0.071 3.929 6 H 0.090 0.910 7 C -0.172 4.172 8 C 0.511 3.489 9 O -0.523 6.523 10 N -0.721 5.721 11 C 0.125 3.875 12 C -0.090 4.090 13 C -0.135 4.135 14 C 0.170 3.830 15 N -0.592 5.592 16 C -0.251 4.251 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.146 3.854 25 C -0.125 4.125 26 H 0.222 0.778 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.401 0.599 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.017 0.983 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.785 -1.243 -11.621 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.192 4.192 3 C 0.094 3.906 4 O -0.270 6.270 5 C 0.010 3.990 6 H 0.108 0.892 7 C -0.230 4.230 8 C 0.296 3.704 9 O -0.398 6.398 10 N -0.375 5.375 11 C 0.002 3.998 12 C -0.109 4.109 13 C -0.174 4.174 14 C 0.045 3.955 15 N -0.315 5.315 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.020 3.980 25 C -0.165 4.165 26 H 0.239 0.761 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.236 0.764 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.377 -0.983 -10.954 20.565 hybrid contribution 0.809 -0.676 0.150 1.065 sum -16.568 -1.658 -10.804 19.849 Atomic orbital electron populations 1.24978 0.95895 1.00682 0.97390 1.22438 0.93815 1.00753 1.02233 1.19182 0.85070 1.01405 0.84951 1.88126 1.19097 1.94149 1.25626 1.21943 0.82754 0.96454 0.97855 0.89249 1.22262 1.02168 0.94674 1.03916 1.20266 0.82862 0.81109 0.86206 1.90727 1.50203 1.50561 1.48328 1.46001 1.06683 1.53198 1.31579 1.21579 0.95847 0.94244 0.88143 1.21312 0.91649 0.98091 0.99866 1.22254 1.00613 0.94228 1.00304 1.20766 0.88027 0.94948 0.91807 1.44054 1.48252 1.05242 1.33977 1.19213 1.06632 1.19247 0.92947 0.91678 1.25037 0.96852 1.01751 0.96106 1.70039 1.33708 1.32221 1.18842 0.86279 0.78775 0.79418 0.82339 1.21492 1.21813 1.20385 1.20880 0.90033 0.88555 0.98570 1.21989 0.99369 0.97242 0.97874 0.76106 0.90533 0.90609 0.91120 0.90359 0.90873 0.76380 0.91874 0.91535 0.91282 0.92461 0.93615 0.96540 0.89536 0.93697 0.96528 0.92730 0.92919 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 19.25 29.55 0.57 -0.93 16 2 C -0.19 -1.98 13.73 -37.12 -0.51 -2.48 16 3 C 0.17 1.48 6.22 34.37 0.21 1.70 16 4 O -0.35 -4.32 9.48 -55.09 -0.52 -4.84 16 5 C 0.07 0.71 3.13 -27.88 -0.09 0.62 16 6 H 0.09 0.60 7.79 -51.93 -0.40 0.20 16 7 C -0.17 -1.40 9.48 37.16 0.35 -1.05 16 8 C 0.51 6.92 7.18 -10.98 -0.08 6.84 16 9 O -0.52 -9.57 16.51 -14.30 -0.24 -9.81 16 10 N -0.72 -8.66 5.23 -60.29 -0.32 -8.97 16 11 C 0.12 1.73 5.06 -4.04 -0.02 1.71 16 12 C -0.09 -1.36 2.19 -90.58 -0.20 -1.56 16 13 C -0.13 -2.34 5.25 -26.62 -0.14 -2.48 16 14 C 0.17 3.84 5.31 -3.71 -0.02 3.82 16 15 N -0.59 -14.40 2.99 -172.33 -0.52 -14.91 16 16 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 17 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 18 C 0.00 0.03 4.90 -17.43 -0.09 -0.06 16 19 N -0.90 -25.71 11.22 55.49 0.62 -25.09 16 20 Si 0.90 21.48 29.59 -169.99 -5.03 16.46 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 C 0.15 2.95 6.51 -3.71 -0.02 2.93 16 25 C -0.12 -2.05 5.36 -26.61 -0.14 -2.20 16 26 H 0.22 1.06 7.80 -54.09 -0.42 0.64 16 27 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 28 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 30 H 0.08 0.54 7.92 -51.92 -0.41 0.13 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.40 3.88 7.43 -40.82 -0.30 3.58 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.67 7.15 -51.93 -0.37 0.30 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 1.09 7.94 -51.93 -0.41 0.68 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -33.85 364.90 -8.04 -41.89 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.23 Total: -0.17 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.32 Total: -0.05 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.21 Total: -48.98 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.76 Total: -14.65 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.85 -8.04 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223174802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.822 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds