Wall clock time and date at job start Tue Mar 31 2020 07:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47305 * 263.30595 * 3 2 1 5 5 C 1.42897 * 114.00241 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47556 * 30.00053 * 5 4 3 7 7 C 1.53002 * 109.46936 * 270.00310 * 5 4 3 8 8 C 1.50701 * 109.47138 * 150.00353 * 5 4 3 9 9 O 1.21280 * 120.00362 * 4.99795 * 8 5 4 10 10 N 1.34782 * 119.99799 * 185.00038 * 8 5 4 11 11 C 1.46500 * 119.99842 * 179.97438 * 10 8 5 12 12 C 1.53005 * 109.46921 * 179.97438 * 11 10 8 13 13 C 1.53035 * 109.46249 * 295.02809 * 12 11 10 14 14 C 1.53188 * 109.31545 * 178.60351 * 13 12 11 15 15 N 1.46928 * 108.76596 * 54.65080 * 14 13 12 16 16 C 1.36937 * 120.63018 * 126.36491 * 15 14 13 17 17 H 1.07995 * 120.00352 * 208.02231 * 16 15 14 18 18 C 1.38810 * 120.00013 * 28.02358 * 16 15 14 19 19 N 1.31625 * 120.00223 * 17.52366 * 18 16 15 20 20 Si 1.86802 * 120.00261 * 197.52913 * 18 16 15 21 21 H 1.48495 * 109.47401 * 94.06329 * 20 18 16 22 22 H 1.48504 * 109.46951 * 214.06757 * 20 18 16 23 23 H 1.48499 * 109.46714 * 334.06421 * 20 18 16 24 24 C 1.46921 * 118.73894 * 306.38976 * 15 14 13 25 25 C 1.53041 * 109.45725 * 174.97167 * 12 11 10 26 26 H 4.38446 * 5.44460 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.47761 * 23.31273 * 3 2 1 28 28 H 1.09004 * 109.46847 * 143.30803 * 3 2 1 29 29 H 1.08997 * 109.47288 * 59.99745 * 7 5 4 30 30 H 1.09007 * 109.47115 * 180.02562 * 7 5 4 31 31 H 1.09003 * 109.46829 * 299.99658 * 7 5 4 32 32 H 0.97001 * 120.00037 * 359.97438 * 10 8 5 33 33 H 1.08996 * 109.47403 * 299.99817 * 11 10 8 34 34 H 1.08997 * 109.47047 * 59.99687 * 11 10 8 35 35 H 1.09001 * 109.45662 * 55.00140 * 12 11 10 36 36 H 1.09002 * 109.49831 * 298.56568 * 13 12 11 37 37 H 1.09007 * 109.49693 * 58.66192 * 13 12 11 38 38 H 1.09000 * 109.59774 * 294.86585 * 14 13 12 39 39 H 1.08998 * 109.70698 * 174.50926 * 14 13 12 40 40 H 0.97000 * 120.00035 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.58754 * 293.81649 * 24 15 14 42 42 H 1.09000 * 109.70597 * 173.46303 * 24 15 14 43 43 H 1.09002 * 109.49824 * 301.33926 * 25 12 11 44 44 H 1.09000 * 109.49667 * 61.40467 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.1579 1.3381 5 6 4.5468 0.1723 1.4501 6 1 4.9790 0.5831 0.5376 7 6 5.0564 -1.2553 1.6579 8 6 4.9497 1.0256 2.6251 9 8 4.1010 1.4938 3.3539 10 7 6.2534 1.2684 2.8660 11 6 6.6451 2.0983 4.0079 12 6 8.1700 2.2149 4.0544 13 6 8.7787 0.8374 4.3264 14 6 10.3063 0.9517 4.3376 15 7 10.6958 1.9854 5.3064 16 6 11.5978 1.7073 6.2985 17 1 11.5573 2.2482 7.2323 18 6 12.5643 0.7301 6.1039 19 7 12.8462 0.3164 4.8865 20 14 13.4649 0.0021 7.5696 21 1 12.7769 -1.2392 8.0067 22 1 14.8629 -0.3166 7.1831 23 1 13.4709 0.9834 8.6841 24 6 10.0988 3.3229 5.1908 25 6 8.5736 3.1819 5.1698 26 1 -1.0500 -0.0002 0.0000 27 1 3.0099 -0.9428 -0.4067 28 1 3.0090 0.8249 -0.6141 29 1 4.7650 -1.8725 0.8081 30 1 6.1431 -1.2443 1.7438 31 1 4.6244 -1.6661 2.5705 32 1 6.9323 0.8936 2.2833 33 1 6.2075 3.0910 3.9027 34 1 6.2878 1.6397 4.9299 35 1 8.5347 2.5907 3.0984 36 1 8.4340 0.4720 5.2938 37 1 8.4717 0.1431 3.5442 38 1 10.6593 1.2300 3.3446 39 1 10.7442 -0.0037 4.6266 40 1 13.5213 -0.3667 4.7506 41 1 10.4350 3.7945 4.2674 42 1 10.3976 3.9336 6.0428 43 1 8.1206 4.1565 4.9880 44 1 8.2303 2.7944 6.1291 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223174802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:38 Heat of formation + Delta-G solvation = -35.771932 kcal Electronic energy + Delta-G solvation = -23419.473259 eV Core-core repulsion = 19952.028722 eV Total energy + Delta-G solvation = -3467.444537 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13040 -39.54413 -38.73037 -36.37977 -34.69529 -34.33238 -32.79265 -31.80259 -31.48302 -28.42294 -28.07362 -26.06716 -24.70602 -23.79198 -22.57437 -21.49737 -20.63287 -19.64120 -18.71841 -18.23903 -17.97260 -16.92954 -16.81192 -16.42874 -16.13393 -15.80670 -15.62252 -15.28073 -15.05121 -14.76535 -14.54689 -14.04193 -14.00410 -13.76182 -13.60387 -13.29126 -13.17683 -13.05246 -12.82687 -12.57085 -12.44213 -12.26768 -11.94737 -11.82236 -11.71359 -11.59311 -11.56418 -11.21623 -11.11321 -10.88366 -10.52226 -10.45275 -10.09791 -8.65224 -7.86478 -5.30471 1.35686 1.46368 1.48309 1.55850 1.56729 1.81350 2.11460 2.51934 3.04234 3.27446 3.57085 3.70850 3.73384 3.87094 3.93446 3.96901 4.06060 4.09114 4.26391 4.47222 4.54971 4.56435 4.69767 4.71501 4.75620 4.77026 4.83608 4.95049 5.01358 5.06198 5.19331 5.22319 5.26828 5.31311 5.40842 5.44338 5.57786 5.68426 5.82432 5.99741 6.41527 6.54820 6.59436 7.17756 7.21291 7.90025 8.40064 9.19377 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.002636 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.604370 B =10619.473003 C =11099.267859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.388 6.388 5 C 0.074 3.926 6 H 0.128 0.872 7 C -0.169 4.169 8 C 0.508 3.492 9 O -0.578 6.578 10 N -0.709 5.709 11 C 0.136 3.864 12 C -0.077 4.077 13 C -0.120 4.120 14 C 0.175 3.825 15 N -0.613 5.613 16 C -0.261 4.261 17 H 0.062 0.938 18 C -0.050 4.050 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.271 1.271 24 C 0.141 3.859 25 C -0.117 4.117 26 H 0.252 0.748 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.416 0.584 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.003 0.997 39 H 0.050 0.950 40 H 0.250 0.750 41 H 0.018 0.982 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.796 -1.290 -12.838 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.238 4.238 3 C 0.088 3.912 4 O -0.307 6.307 5 C 0.014 3.986 6 H 0.146 0.854 7 C -0.226 4.226 8 C 0.294 3.706 9 O -0.457 6.457 10 N -0.363 5.363 11 C 0.012 3.988 12 C -0.096 4.096 13 C -0.159 4.159 14 C 0.050 3.950 15 N -0.336 5.336 16 C -0.391 4.391 17 H 0.080 0.920 18 C -0.246 4.246 19 N -0.578 5.578 20 Si 0.791 3.209 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.195 1.195 24 C 0.016 3.984 25 C -0.156 4.156 26 H 0.268 0.732 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.253 0.747 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.021 0.979 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.380 -1.024 -12.193 22.080 hybrid contribution 1.093 -0.608 0.508 1.350 sum -17.287 -1.632 -11.685 20.929 Atomic orbital electron populations 1.25874 0.96949 0.99611 0.95991 1.23192 0.95150 1.01938 1.03554 1.19479 0.84490 1.03446 0.83757 1.88073 1.20315 1.94448 1.27903 1.22056 0.82303 0.96772 0.97487 0.85411 1.22273 1.02830 0.93663 1.03861 1.21011 0.82442 0.80557 0.86580 1.90701 1.51653 1.52891 1.50467 1.45877 1.06880 1.52518 1.31045 1.21308 0.94394 0.94738 0.88349 1.21159 0.92379 0.96199 0.99881 1.22046 0.96668 0.96513 1.00717 1.20617 0.91184 0.92812 0.90434 1.44348 1.48275 1.07256 1.33769 1.19493 1.06909 1.19107 0.93634 0.92022 1.25731 0.98025 1.02464 0.98345 1.70170 1.34415 1.32765 1.20460 0.85322 0.77272 0.78588 0.79694 1.21397 1.22105 1.19537 1.21036 0.92351 0.86636 0.98398 1.21867 0.96404 0.99273 0.98062 0.73218 0.88018 0.88815 0.88759 0.88906 0.93120 0.74688 0.91421 0.92999 0.90041 0.93881 0.90630 0.97938 0.93172 0.94124 0.96382 0.93139 0.89865 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 19.25 74.32 1.43 -1.26 16 2 C -0.24 -4.64 13.73 31.12 0.43 -4.21 16 3 C 0.16 2.54 6.22 70.18 0.44 2.98 16 4 O -0.39 -9.02 9.48 -129.99 -1.23 -10.25 16 5 C 0.07 1.30 3.13 29.85 0.09 1.40 16 6 H 0.13 1.22 7.79 -2.39 -0.02 1.20 16 7 C -0.17 -2.30 9.48 71.98 0.68 -1.62 16 8 C 0.51 12.96 7.18 87.66 0.63 13.59 16 9 O -0.58 -21.03 16.51 15.96 0.26 -20.77 16 10 N -0.71 -15.32 5.23 -463.05 -2.42 -17.75 16 11 C 0.14 3.48 5.06 86.38 0.44 3.92 16 12 C -0.08 -2.17 2.19 -10.77 -0.02 -2.19 16 13 C -0.12 -4.02 5.25 30.67 0.16 -3.86 16 14 C 0.18 7.94 5.31 86.36 0.46 8.40 16 15 N -0.61 -29.96 2.99 -699.12 -2.09 -32.05 16 16 C -0.26 -14.27 9.58 84.03 0.81 -13.46 16 17 H 0.06 3.33 7.89 -2.91 -0.02 3.31 16 18 C -0.05 -2.78 4.90 84.86 0.42 -2.36 16 19 N -0.93 -54.09 11.22 21.65 0.24 -53.85 16 20 Si 0.96 44.70 29.59 68.60 2.03 46.73 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 C 0.14 5.60 6.51 86.36 0.56 6.16 16 25 C -0.12 -3.62 5.36 30.67 0.16 -3.45 16 26 H 0.25 1.88 7.80 -4.42 -0.03 1.85 16 27 H 0.10 0.99 7.87 -2.39 -0.02 0.97 16 28 H 0.09 1.05 8.08 -2.38 -0.02 1.03 16 29 H 0.09 0.85 7.87 -2.39 -0.02 0.83 16 30 H 0.09 0.98 7.92 -2.38 -0.02 0.96 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.42 6.62 7.43 -92.71 -0.69 5.93 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 2.05 7.15 -2.38 -0.02 2.04 16 38 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.05 2.63 6.06 -2.39 -0.01 2.62 16 40 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.05 2.00 7.94 -2.39 -0.02 1.98 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -76.10 364.90 3.75 -72.35 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.28 Total: 11.56 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 6.68 Total: 4.04 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -4.27 Total: -103.65 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.97 Total: -31.02 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -76.10 3.75 -72.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223174802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.576 kcal (2) G-P(sol) polarization free energy of solvation -76.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds