Wall clock time and date at job start Tue Mar 31 2020 07:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47302 * 307.06665 * 3 2 1 5 5 C 1.42897 * 114.00229 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.46997 * 329.99333 * 5 4 3 7 7 C 1.52995 * 109.47633 * 89.99726 * 5 4 3 8 8 C 1.50706 * 109.47163 * 209.99491 * 5 4 3 9 9 O 1.21285 * 119.99869 * 354.99925 * 8 5 4 10 10 N 1.34775 * 120.00080 * 174.99643 * 8 5 4 11 11 C 1.46500 * 119.99648 * 180.02562 * 10 8 5 12 12 C 1.52999 * 109.46707 * 180.02562 * 11 10 8 13 13 C 1.53046 * 109.46230 * 295.02350 * 12 11 10 14 14 C 1.53193 * 109.31338 * 178.60177 * 13 12 11 15 15 N 1.46928 * 108.76378 * 54.65575 * 14 13 12 16 16 C 1.36932 * 120.62784 * 126.36113 * 15 14 13 17 17 H 1.08003 * 120.00355 * 331.86045 * 16 15 14 18 18 C 1.38818 * 120.00155 * 151.86263 * 16 15 14 19 19 N 1.31612 * 119.99843 * 343.06396 * 18 16 15 20 20 Si 1.86798 * 120.00078 * 163.06860 * 18 16 15 21 21 H 1.48502 * 109.47416 * 89.99663 * 20 18 16 22 22 H 1.48507 * 109.46840 * 210.00027 * 20 18 16 23 23 H 1.48499 * 109.47097 * 329.99527 * 20 18 16 24 24 C 1.46922 * 118.74068 * 306.38439 * 15 14 13 25 25 C 1.53047 * 109.46092 * 174.97199 * 12 11 10 26 26 H 4.38444 * 5.44388 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47299 * 187.06320 * 3 2 1 28 28 H 1.09005 * 109.47012 * 67.06157 * 3 2 1 29 29 H 1.09004 * 109.46682 * 300.00185 * 7 5 4 30 30 H 1.08994 * 109.47700 * 179.97438 * 7 5 4 31 31 H 1.08995 * 109.47250 * 59.99762 * 7 5 4 32 32 H 0.96996 * 120.00251 * 359.97438 * 10 8 5 33 33 H 1.08995 * 109.47167 * 299.99630 * 11 10 8 34 34 H 1.08993 * 109.47490 * 60.00294 * 11 10 8 35 35 H 1.08996 * 109.46265 * 55.00151 * 12 11 10 36 36 H 1.09000 * 109.49712 * 298.57068 * 13 12 11 37 37 H 1.08998 * 109.49145 * 58.66624 * 13 12 11 38 38 H 1.09005 * 109.59791 * 294.86977 * 14 13 12 39 39 H 1.08997 * 109.69807 * 174.50837 * 14 13 12 40 40 H 0.97002 * 120.00423 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.58594 * 293.81813 * 24 15 14 42 42 H 1.09005 * 109.70432 * 173.46686 * 24 15 14 43 43 H 1.09000 * 109.49611 * 301.33710 * 25 12 11 44 44 H 1.08997 * 109.49375 * 61.42895 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.8112 1.0750 5 6 4.5473 -0.8781 1.1654 6 1 4.9799 -0.7703 0.1708 7 6 5.0547 0.2489 2.0672 8 6 4.9518 -2.2080 1.7477 9 8 4.1038 -2.9818 2.1389 10 7 6.2558 -2.5374 1.8336 11 6 6.6489 -3.8304 2.3991 12 6 8.1739 -3.9523 2.3813 13 6 8.6666 -3.9767 0.9325 14 6 10.1960 -4.0636 0.9188 15 7 10.6105 -5.2257 1.7165 16 6 11.4390 -6.1774 1.1845 17 1 11.4399 -6.3585 0.1198 18 6 12.2779 -6.9094 2.0137 19 7 12.5318 -6.4848 3.2333 20 14 13.0463 -8.4970 1.3984 21 1 14.3513 -8.1988 0.7557 22 1 13.2572 -9.4205 2.5422 23 1 12.1410 -9.1339 0.4084 24 6 10.1188 -5.3477 3.0956 25 6 8.5903 -5.2461 3.0849 26 1 -1.0498 0.0000 0.0003 27 1 3.0089 1.0207 0.1264 28 1 3.0095 -0.3997 -0.9465 29 1 4.7621 1.2108 1.6461 30 1 6.1412 0.1976 2.1365 31 1 4.6221 0.1410 3.0618 32 1 6.9340 -1.9187 1.5204 33 1 6.2911 -3.9016 3.4262 34 1 6.2129 -4.6341 1.8059 35 1 8.6125 -3.0997 2.8997 36 1 8.2482 -4.8432 0.4205 37 1 8.3497 -3.0655 0.4252 38 1 10.6177 -3.1554 1.3498 39 1 10.5483 -4.1794 -0.1061 40 1 13.1183 -6.9961 3.8126 41 1 10.5342 -4.5443 3.7041 42 1 10.4181 -6.3110 3.5087 43 1 8.2190 -5.2385 4.1097 44 1 8.1726 -6.1004 2.5524 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223174803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:41 Heat of formation + Delta-G solvation = -13.715360 kcal Electronic energy + Delta-G solvation = -23339.642076 eV Core-core repulsion = 19873.153983 eV Total energy + Delta-G solvation = -3466.488093 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.14716 -38.37753 -37.58043 -34.96844 -33.82276 -32.98197 -31.63646 -30.63436 -29.70490 -27.47136 -26.96435 -24.66056 -23.53438 -22.22875 -21.09691 -20.47267 -19.21535 -18.90763 -17.45824 -17.22963 -16.69084 -16.10326 -15.52704 -15.21275 -15.00716 -14.71039 -14.10383 -13.77067 -13.71429 -13.52764 -13.29885 -13.18376 -12.80043 -12.58896 -12.38138 -12.33370 -11.86438 -11.75807 -11.35291 -11.02508 -10.99977 -10.89715 -10.71794 -10.52956 -10.26623 -10.23805 -10.13816 -9.94902 -9.68686 -9.55949 -9.41149 -9.02326 -8.47794 -6.67884 -5.80105 -3.22359 2.04826 2.46185 2.54806 2.97647 3.36594 3.43957 3.46448 3.68968 4.19114 4.44603 4.48933 4.57957 4.68027 4.78212 4.98956 5.08574 5.20865 5.22014 5.32001 5.35885 5.40517 5.55077 5.58662 5.74356 5.84633 5.92164 6.02278 6.12256 6.30160 6.38464 6.43460 6.58174 6.62996 6.68935 6.74540 6.79569 6.95827 7.22370 7.35337 7.46661 7.64846 7.78553 8.17634 8.44349 9.20550 9.84125 10.40689 11.28466 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040064 B = 0.002457 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.713529 B =11393.396469 C =11443.700537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.193 4.193 3 C 0.170 3.830 4 O -0.351 6.351 5 C 0.071 3.929 6 H 0.090 0.910 7 C -0.172 4.172 8 C 0.511 3.489 9 O -0.522 6.522 10 N -0.722 5.722 11 C 0.124 3.876 12 C -0.090 4.090 13 C -0.127 4.127 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.172 3.828 25 C -0.133 4.133 26 H 0.222 0.778 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.400 0.600 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.052 0.948 40 H 0.254 0.746 41 H 0.017 0.983 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.066 15.227 -4.940 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.193 4.193 3 C 0.094 3.906 4 O -0.270 6.270 5 C 0.010 3.990 6 H 0.108 0.892 7 C -0.229 4.229 8 C 0.295 3.705 9 O -0.397 6.397 10 N -0.375 5.375 11 C 0.001 3.999 12 C -0.108 4.108 13 C -0.166 4.166 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.046 3.954 25 C -0.173 4.173 26 H 0.239 0.761 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.235 0.765 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.683 14.463 -4.400 22.514 hybrid contribution 0.748 -0.351 -0.565 1.001 sum -15.935 14.112 -4.965 21.857 Atomic orbital electron populations 1.24977 0.95901 0.99486 0.98510 1.22429 0.93811 1.01294 1.01758 1.19186 0.85086 0.95540 0.90784 1.88128 1.19042 1.69649 1.50161 1.21940 0.82823 0.93962 1.00324 0.89212 1.22251 1.01996 0.97604 1.01079 1.20269 0.82888 0.87813 0.79553 1.90736 1.50247 1.51540 1.47138 1.46015 1.06635 1.20632 1.64236 1.21605 0.95916 0.83859 0.98485 1.21315 0.91768 1.00004 0.97761 1.22081 0.99385 1.00192 0.94988 1.20888 0.91031 0.90504 0.95704 1.44043 1.54355 1.21987 1.11128 1.19161 1.14424 1.11819 0.92776 0.91799 1.25045 0.97331 1.00321 0.97000 1.70021 1.38374 1.38070 1.08279 0.86317 0.79151 0.83631 0.77789 1.21424 1.21549 1.20498 1.20759 0.86898 1.01887 0.85871 1.22183 1.01276 0.95501 0.98341 0.76103 0.90564 0.90562 0.91125 0.90515 0.90917 0.76524 0.91695 0.91528 0.91261 0.92142 0.93525 0.96630 0.92898 0.93634 0.96449 0.89403 0.93026 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 19.25 29.55 0.57 -0.90 16 2 C -0.19 -1.95 13.73 -37.12 -0.51 -2.46 16 3 C 0.17 1.44 6.22 34.37 0.21 1.66 16 4 O -0.35 -4.20 9.48 -55.09 -0.52 -4.73 16 5 C 0.07 0.67 3.13 -27.88 -0.09 0.58 16 6 H 0.09 0.58 7.79 -51.93 -0.40 0.17 16 7 C -0.17 -1.22 9.48 37.15 0.35 -0.87 16 8 C 0.51 6.74 7.18 -10.98 -0.08 6.66 16 9 O -0.52 -9.47 16.51 -14.31 -0.24 -9.71 16 10 N -0.72 -8.33 5.23 -60.30 -0.32 -8.64 16 11 C 0.12 1.72 5.06 -4.04 -0.02 1.70 16 12 C -0.09 -1.36 2.19 -90.57 -0.20 -1.55 16 13 C -0.13 -2.00 5.25 -26.61 -0.14 -2.14 16 14 C 0.15 2.87 6.52 -3.71 -0.02 2.85 16 15 N -0.59 -14.42 2.99 -172.32 -0.52 -14.94 16 16 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 17 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 18 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 19 N -0.90 -25.92 11.19 55.49 0.62 -25.30 16 20 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 C 0.17 3.96 5.30 -3.72 -0.02 3.94 16 25 C -0.13 -2.42 5.36 -26.61 -0.14 -2.56 16 26 H 0.22 1.04 7.80 -54.10 -0.42 0.61 16 27 H 0.08 0.44 7.87 -51.93 -0.41 0.04 16 28 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.07 0.38 7.87 -51.93 -0.41 -0.03 16 30 H 0.08 0.43 7.92 -51.93 -0.41 0.02 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 3.54 7.43 -40.82 -0.30 3.24 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.59 7.15 -51.93 -0.37 0.21 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 364.87 15.07 5.50 5.50 Total: -1.00 -34.09 364.87 -8.04 -42.13 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.23 Total: -0.70 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.32 Total: -0.11 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.21 Total: -48.89 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.76 Total: -14.44 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.09 -8.04 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223174803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.418 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds