Wall clock time and date at job start Tue Mar 31 2020 07:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47302 * 307.06665 * 3 2 1 5 5 C 1.42897 * 114.00229 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.46997 * 329.99333 * 5 4 3 7 7 C 1.52995 * 109.47633 * 89.99726 * 5 4 3 8 8 C 1.50706 * 109.47163 * 209.99491 * 5 4 3 9 9 O 1.21285 * 119.99869 * 354.99925 * 8 5 4 10 10 N 1.34775 * 120.00080 * 174.99643 * 8 5 4 11 11 C 1.46500 * 119.99648 * 180.02562 * 10 8 5 12 12 C 1.52999 * 109.46707 * 180.02562 * 11 10 8 13 13 C 1.53046 * 109.46230 * 295.02350 * 12 11 10 14 14 C 1.53193 * 109.31338 * 178.60177 * 13 12 11 15 15 N 1.46928 * 108.76378 * 54.65575 * 14 13 12 16 16 C 1.36932 * 120.62784 * 126.36113 * 15 14 13 17 17 H 1.08003 * 120.00355 * 331.86045 * 16 15 14 18 18 C 1.38818 * 120.00155 * 151.86263 * 16 15 14 19 19 N 1.31612 * 119.99843 * 343.06396 * 18 16 15 20 20 Si 1.86798 * 120.00078 * 163.06860 * 18 16 15 21 21 H 1.48502 * 109.47416 * 89.99663 * 20 18 16 22 22 H 1.48507 * 109.46840 * 210.00027 * 20 18 16 23 23 H 1.48499 * 109.47097 * 329.99527 * 20 18 16 24 24 C 1.46922 * 118.74068 * 306.38439 * 15 14 13 25 25 C 1.53047 * 109.46092 * 174.97199 * 12 11 10 26 26 H 4.38444 * 5.44388 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47299 * 187.06320 * 3 2 1 28 28 H 1.09005 * 109.47012 * 67.06157 * 3 2 1 29 29 H 1.09004 * 109.46682 * 300.00185 * 7 5 4 30 30 H 1.08994 * 109.47700 * 179.97438 * 7 5 4 31 31 H 1.08995 * 109.47250 * 59.99762 * 7 5 4 32 32 H 0.96996 * 120.00251 * 359.97438 * 10 8 5 33 33 H 1.08995 * 109.47167 * 299.99630 * 11 10 8 34 34 H 1.08993 * 109.47490 * 60.00294 * 11 10 8 35 35 H 1.08996 * 109.46265 * 55.00151 * 12 11 10 36 36 H 1.09000 * 109.49712 * 298.57068 * 13 12 11 37 37 H 1.08998 * 109.49145 * 58.66624 * 13 12 11 38 38 H 1.09005 * 109.59791 * 294.86977 * 14 13 12 39 39 H 1.08997 * 109.69807 * 174.50837 * 14 13 12 40 40 H 0.97002 * 120.00423 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.58594 * 293.81813 * 24 15 14 42 42 H 1.09005 * 109.70432 * 173.46686 * 24 15 14 43 43 H 1.09000 * 109.49611 * 301.33710 * 25 12 11 44 44 H 1.08997 * 109.49375 * 61.42895 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.8112 1.0750 5 6 4.5473 -0.8781 1.1654 6 1 4.9799 -0.7703 0.1708 7 6 5.0547 0.2489 2.0672 8 6 4.9518 -2.2080 1.7477 9 8 4.1038 -2.9818 2.1389 10 7 6.2558 -2.5374 1.8336 11 6 6.6489 -3.8304 2.3991 12 6 8.1739 -3.9523 2.3813 13 6 8.6666 -3.9767 0.9325 14 6 10.1960 -4.0636 0.9188 15 7 10.6105 -5.2257 1.7165 16 6 11.4390 -6.1774 1.1845 17 1 11.4399 -6.3585 0.1198 18 6 12.2779 -6.9094 2.0137 19 7 12.5318 -6.4848 3.2333 20 14 13.0463 -8.4970 1.3984 21 1 14.3513 -8.1988 0.7557 22 1 13.2572 -9.4205 2.5422 23 1 12.1410 -9.1339 0.4084 24 6 10.1188 -5.3477 3.0956 25 6 8.5903 -5.2461 3.0849 26 1 -1.0498 0.0000 0.0003 27 1 3.0089 1.0207 0.1264 28 1 3.0095 -0.3997 -0.9465 29 1 4.7621 1.2108 1.6461 30 1 6.1412 0.1976 2.1365 31 1 4.6221 0.1410 3.0618 32 1 6.9340 -1.9187 1.5204 33 1 6.2911 -3.9016 3.4262 34 1 6.2129 -4.6341 1.8059 35 1 8.6125 -3.0997 2.8997 36 1 8.2482 -4.8432 0.4205 37 1 8.3497 -3.0655 0.4252 38 1 10.6177 -3.1554 1.3498 39 1 10.5483 -4.1794 -0.1061 40 1 13.1183 -6.9961 3.8126 41 1 10.5342 -4.5443 3.7041 42 1 10.4181 -6.3110 3.5087 43 1 8.2190 -5.2385 4.1097 44 1 8.1726 -6.1004 2.5524 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223174803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:40 Heat of formation + Delta-G solvation = -35.841925 kcal Electronic energy + Delta-G solvation = -23340.601556 eV Core-core repulsion = 19873.153983 eV Total energy + Delta-G solvation = -3467.447573 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.12604 -39.54473 -38.72455 -36.39135 -34.67388 -34.31401 -32.82473 -31.95866 -31.30272 -28.44021 -28.06693 -26.06999 -24.70866 -23.76323 -22.59794 -21.47530 -20.66522 -19.64097 -18.70491 -18.24344 -17.93683 -16.94138 -16.77747 -16.44572 -16.18747 -15.81544 -15.53817 -15.29069 -15.03023 -14.75392 -14.62464 -14.04674 -13.93534 -13.82159 -13.60414 -13.31892 -13.16145 -12.98390 -12.80301 -12.55132 -12.42185 -12.25870 -12.01076 -11.82864 -11.70819 -11.60764 -11.55882 -11.22935 -11.09224 -10.88356 -10.53188 -10.43878 -10.10004 -8.64893 -7.86437 -5.30775 1.36103 1.45788 1.48112 1.57029 1.57168 1.81549 2.11103 2.51935 3.04899 3.28249 3.57858 3.71624 3.73305 3.85888 3.94463 3.96527 4.07438 4.11143 4.26874 4.47912 4.53187 4.56268 4.71033 4.73000 4.74842 4.80067 4.85496 4.95470 5.01686 5.04425 5.15863 5.24160 5.30658 5.31580 5.38745 5.46389 5.57345 5.67506 5.80775 6.00802 6.41299 6.56650 6.59741 7.17190 7.23245 7.90131 8.40286 9.19649 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040064 B = 0.002457 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.713529 B =11393.396469 C =11443.700537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.389 6.389 5 C 0.074 3.926 6 H 0.128 0.872 7 C -0.167 4.167 8 C 0.507 3.493 9 O -0.580 6.580 10 N -0.707 5.707 11 C 0.136 3.864 12 C -0.076 4.076 13 C -0.114 4.114 14 C 0.139 3.861 15 N -0.613 5.613 16 C -0.260 4.260 17 H 0.064 0.936 18 C -0.053 4.053 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.273 1.273 24 C 0.177 3.823 25 C -0.124 4.124 26 H 0.251 0.749 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.417 0.583 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.021 0.979 39 H 0.051 0.949 40 H 0.249 0.751 41 H 0.000 1.000 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.892 17.138 -6.463 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.238 4.238 3 C 0.089 3.911 4 O -0.309 6.309 5 C 0.013 3.987 6 H 0.145 0.855 7 C -0.224 4.224 8 C 0.293 3.707 9 O -0.459 6.459 10 N -0.361 5.361 11 C 0.013 3.987 12 C -0.095 4.095 13 C -0.153 4.153 14 C 0.014 3.986 15 N -0.336 5.336 16 C -0.391 4.391 17 H 0.082 0.918 18 C -0.248 4.248 19 N -0.581 5.581 20 Si 0.792 3.208 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.198 1.198 24 C 0.052 3.948 25 C -0.163 4.163 26 H 0.267 0.733 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.018 0.982 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.496 16.423 -5.961 24.726 hybrid contribution 0.971 -0.900 -0.115 1.329 sum -16.525 15.523 -6.076 23.472 Atomic orbital electron populations 1.25867 0.96966 0.98391 0.97304 1.23209 0.95184 1.02450 1.02959 1.19482 0.84426 0.96657 0.90567 1.88075 1.20426 1.70734 1.51617 1.22076 0.82267 0.91968 1.02357 0.85464 1.22264 1.02978 0.97689 0.99516 1.21066 0.82452 0.88717 0.78457 1.90712 1.51806 1.53608 1.49761 1.45824 1.06882 1.19930 1.63448 1.21266 0.94428 0.84816 0.98240 1.21142 0.92671 0.98525 0.97185 1.21942 0.96021 1.01834 0.95536 1.21092 0.93755 0.88886 0.94864 1.44333 1.54353 1.23211 1.11751 1.19484 1.14196 1.12463 0.92931 0.91786 1.25771 0.98452 1.03215 0.97350 1.70167 1.39391 1.39133 1.09362 0.85339 0.78369 0.80034 0.77085 1.21055 1.22006 1.19760 1.20555 0.89961 0.99107 0.85211 1.21990 0.97416 0.97095 0.99831 0.73280 0.87828 0.88951 0.88804 0.88556 0.93047 0.74479 0.92221 0.92804 0.90060 0.93322 0.89220 0.96131 0.93001 0.94181 0.98192 0.93228 0.91425 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 19.25 74.32 1.43 -1.24 16 2 C -0.24 -4.54 13.73 31.12 0.43 -4.11 16 3 C 0.16 2.44 6.22 70.18 0.44 2.88 16 4 O -0.39 -8.72 9.48 -129.99 -1.23 -9.95 16 5 C 0.07 1.19 3.13 29.85 0.09 1.28 16 6 H 0.13 1.07 7.79 -2.39 -0.02 1.05 16 7 C -0.17 -1.84 9.48 71.98 0.68 -1.16 16 8 C 0.51 12.44 7.18 87.66 0.63 13.07 16 9 O -0.58 -20.97 16.51 15.94 0.26 -20.71 16 10 N -0.71 -14.28 5.23 -463.07 -2.42 -16.70 16 11 C 0.14 3.52 5.06 86.38 0.44 3.96 16 12 C -0.08 -2.15 2.19 -10.76 -0.02 -2.17 16 13 C -0.11 -3.29 5.25 30.67 0.16 -3.12 16 14 C 0.14 5.29 6.52 86.36 0.56 5.85 16 15 N -0.61 -29.95 2.99 -699.09 -2.09 -32.04 16 16 C -0.26 -14.21 9.58 84.04 0.81 -13.40 16 17 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 18 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 19 N -0.93 -55.12 11.19 21.65 0.24 -54.88 16 20 Si 0.96 44.92 29.59 68.60 2.03 46.95 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 C 0.18 8.35 5.30 86.36 0.46 8.81 16 25 C -0.12 -4.44 5.36 30.67 0.16 -4.27 16 26 H 0.25 1.84 7.80 -4.43 -0.03 1.81 16 27 H 0.10 0.89 7.87 -2.39 -0.02 0.87 16 28 H 0.09 1.00 8.09 -2.38 -0.02 0.98 16 29 H 0.09 0.62 7.87 -2.38 -0.02 0.60 16 30 H 0.10 0.67 7.92 -2.39 -0.02 0.65 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.42 5.54 7.43 -92.71 -0.69 4.85 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.84 7.15 -2.39 -0.02 1.82 16 38 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.05 1.95 7.93 -2.39 -0.02 1.94 16 40 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.05 2.70 6.06 -2.38 -0.01 2.68 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -77.62 364.87 3.75 -73.87 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.28 Total: 9.59 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.68 Total: 3.86 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -4.27 Total: -103.61 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.97 Total: -30.66 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -77.62 3.75 -73.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223174803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.028 kcal (2) G-P(sol) polarization free energy of solvation -77.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds