Wall clock time and date at job start Tue Mar 31 2020 07:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47251 * 211.93516 * 3 2 1 5 5 C 1.42905 * 114.00074 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46610 * 329.99409 * 5 4 3 7 7 C 1.52997 * 109.47264 * 89.99687 * 5 4 3 8 8 C 1.50697 * 109.46996 * 210.00118 * 5 4 3 9 9 O 1.21285 * 120.00040 * 354.99689 * 8 5 4 10 10 N 1.34778 * 119.99902 * 174.99831 * 8 5 4 11 11 C 1.46505 * 119.99823 * 179.97438 * 10 8 5 12 12 H 1.09006 * 109.46910 * 35.00167 * 11 10 8 13 13 C 1.52996 * 109.46977 * 275.00257 * 11 10 8 14 14 C 1.53000 * 109.46962 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47513 * 59.99746 * 14 13 11 16 16 C 1.53005 * 109.47233 * 300.00189 * 15 14 13 17 17 C 1.52997 * 109.46978 * 154.99908 * 11 10 8 18 18 H 1.09006 * 109.47088 * 60.00369 * 17 11 10 19 19 N 1.46499 * 109.47136 * 300.00405 * 17 11 10 20 20 C 1.36936 * 119.99930 * 155.00452 * 19 17 11 21 21 H 1.08006 * 120.00238 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00112 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99620 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00061 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47151 * 60.00045 * 24 22 20 26 26 H 1.48502 * 109.47093 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47311 * 299.99832 * 24 22 20 28 28 H 4.38446 * 5.44531 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47417 * 91.93096 * 3 2 1 30 30 H 1.09003 * 109.47628 * 331.93730 * 3 2 1 31 31 H 1.09002 * 109.47153 * 179.97438 * 7 5 4 32 32 H 1.09001 * 109.46832 * 60.00108 * 7 5 4 33 33 H 1.09004 * 109.47261 * 300.00089 * 7 5 4 34 34 H 0.96996 * 120.00226 * 0.02562 * 10 8 5 35 35 H 1.09006 * 109.47228 * 299.99716 * 13 11 10 36 36 H 1.08998 * 109.47728 * 60.00438 * 13 11 10 37 37 H 1.09000 * 109.47614 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.46923 * 299.99271 * 14 13 11 39 39 H 1.08998 * 109.47703 * 60.00031 * 15 14 13 40 40 H 1.09000 * 109.47672 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.47340 * 180.02562 * 16 15 14 42 42 H 1.09005 * 109.46624 * 300.00120 * 16 15 14 43 43 H 0.96994 * 119.99857 * 334.99172 * 19 17 11 44 44 H 0.97000 * 119.99955 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1218 1.1442 0.7126 5 6 4.5463 1.2409 0.7718 6 1 4.9794 0.2408 0.7536 7 6 5.0538 2.0385 -0.4311 8 6 4.9499 1.9398 2.0445 9 8 4.1014 2.3982 2.7799 10 7 6.2538 2.0555 2.3654 11 6 6.6461 2.7354 3.6024 12 1 5.9073 2.5336 4.3780 13 6 6.7248 4.2428 3.3528 14 6 7.1352 4.9529 4.6445 15 6 8.5033 4.4387 5.0966 16 6 8.4247 2.9312 5.3462 17 6 8.0142 2.2212 4.0551 18 1 8.7530 2.4231 3.2795 19 7 7.9388 0.7778 4.2940 20 6 9.0683 0.0090 4.2035 21 1 10.0147 0.4666 3.9557 22 6 8.9970 -1.3587 4.4304 23 7 7.8437 -1.9162 4.7329 24 14 10.5376 -2.4076 4.3063 25 1 11.5409 -1.9322 5.2926 26 1 10.1962 -3.8243 4.5919 27 1 11.1007 -2.3001 2.9364 28 1 -1.0502 -0.0003 0.0000 29 1 3.0093 0.0354 -1.0271 30 1 3.0098 -0.9060 0.4834 31 1 6.1404 2.1127 -0.3857 32 1 4.6207 3.0386 -0.4128 33 1 4.7619 1.5330 -1.3516 34 1 6.9324 1.6892 1.7771 35 1 7.4637 4.4447 2.5772 36 1 5.7502 4.6092 3.0304 37 1 7.1917 6.0268 4.4667 38 1 6.3966 4.7512 5.4204 39 1 9.2419 4.6404 4.3209 40 1 8.7955 4.9442 6.0171 41 1 9.3993 2.5649 5.6688 42 1 7.6861 2.7295 6.1221 43 1 7.0888 0.3668 4.5164 44 1 7.7939 -2.8718 4.8918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226178674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:57 Heat of formation + Delta-G solvation = -29.728234 kcal Electronic energy + Delta-G solvation = -24195.400191 eV Core-core repulsion = 20728.217728 eV Total energy + Delta-G solvation = -3467.182463 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.94820 -38.45631 -37.24129 -34.06106 -33.79675 -33.47738 -31.43870 -31.11256 -29.11479 -27.63763 -27.18041 -24.24512 -23.69955 -21.95944 -21.06604 -20.04001 -19.51356 -18.65483 -17.42632 -16.91414 -16.76697 -15.82685 -15.50573 -15.13053 -14.65348 -14.51639 -14.04444 -13.87721 -13.61883 -13.34581 -13.08810 -12.96898 -12.68708 -12.60354 -12.29951 -12.07737 -12.02516 -11.44503 -11.09477 -10.93466 -10.84181 -10.76169 -10.73545 -10.64403 -10.54392 -10.33064 -10.21061 -9.80932 -9.74715 -9.64845 -9.22548 -8.92642 -8.56473 -7.01515 -5.80701 -3.10626 2.32530 2.70279 2.96248 3.32082 3.39095 3.44487 3.45541 3.98607 4.48575 4.52951 4.79535 4.91405 5.05536 5.08627 5.10391 5.16553 5.31078 5.31720 5.49410 5.50698 5.53908 5.61863 5.71969 5.78378 5.82840 5.89499 5.95836 5.98525 5.99740 6.12281 6.33486 6.45937 6.48744 6.51398 6.58567 6.85616 6.88358 6.96300 7.10945 7.45915 7.64179 7.92359 8.36499 8.60762 9.48148 10.04791 10.40147 11.41142 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.004885 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.613976 B = 5730.334973 C = 7677.614182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.186 4.186 3 C 0.167 3.833 4 O -0.352 6.352 5 C 0.069 3.931 6 H 0.093 0.907 7 C -0.169 4.169 8 C 0.517 3.483 9 O -0.529 6.529 10 N -0.705 5.705 11 C 0.142 3.858 12 H 0.084 0.916 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.174 3.826 18 H 0.050 0.950 19 N -0.722 5.722 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.010 4.010 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.221 0.779 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.402 0.598 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.413 9.009 -10.031 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.186 4.186 3 C 0.092 3.908 4 O -0.270 6.270 5 C 0.008 3.992 6 H 0.111 0.889 7 C -0.226 4.226 8 C 0.301 3.699 9 O -0.405 6.405 10 N -0.356 5.356 11 C 0.037 3.963 12 H 0.102 0.898 13 C -0.163 4.163 14 C -0.152 4.152 15 C -0.157 4.157 16 C -0.174 4.174 17 C 0.063 3.937 18 H 0.068 0.932 19 N -0.363 5.363 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.206 4.206 23 N -0.578 5.578 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.238 0.762 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.237 0.763 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.219 0.781 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.988 9.354 -9.442 14.578 hybrid contribution 0.902 -1.259 -0.286 1.575 sum -5.086 8.095 -9.728 13.639 Atomic orbital electron populations 1.24922 0.95842 0.98715 1.00189 1.22491 0.93841 1.01472 1.00788 1.19204 0.84936 0.89790 0.96901 1.88095 1.19310 1.44061 1.75528 1.21949 0.82528 1.00525 0.94190 0.88901 1.22225 1.01934 1.01478 0.96996 1.20140 0.82978 0.80050 0.86695 1.90695 1.50270 1.47934 1.51570 1.45805 1.06533 1.58488 1.24739 1.21303 0.98310 0.90544 0.86126 0.89797 1.21872 1.01345 0.95125 0.97952 1.21473 0.97595 0.98837 0.97298 1.21581 0.96622 0.97065 1.00475 1.22216 1.02181 0.93063 0.99974 1.20450 0.92550 0.85870 0.94810 0.93158 1.42418 1.09305 1.00550 1.83995 1.19163 0.88383 0.89350 1.40389 0.91249 1.24730 0.96661 0.96800 1.02443 1.69663 1.23271 1.10856 1.53968 0.86313 0.82622 0.79726 0.77743 1.21315 1.21771 1.21318 0.76191 0.90713 0.90322 0.90601 0.91215 0.91376 0.76291 0.92025 0.91912 0.92393 0.91961 0.92389 0.92696 0.91600 0.92450 0.78124 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 19.25 29.55 0.57 -1.43 16 2 C -0.19 -2.43 13.73 -37.12 -0.51 -2.94 16 3 C 0.17 2.04 6.22 34.37 0.21 2.25 16 4 O -0.35 -5.46 9.48 -55.09 -0.52 -5.98 16 5 C 0.07 0.95 3.13 -27.89 -0.09 0.86 16 6 H 0.09 1.15 7.79 -51.93 -0.40 0.74 16 7 C -0.17 -1.74 9.48 37.16 0.35 -1.38 16 8 C 0.52 8.90 7.14 -10.99 -0.08 8.82 16 9 O -0.53 -11.27 16.17 -14.31 -0.23 -11.50 16 10 N -0.70 -11.28 4.87 -53.80 -0.26 -11.54 16 11 C 0.14 2.40 1.98 -67.93 -0.13 2.27 16 12 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 13 C -0.12 -1.76 5.49 -26.73 -0.15 -1.90 16 14 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 16 C -0.13 -2.29 5.50 -26.75 -0.15 -2.44 16 17 C 0.17 3.21 2.29 -67.96 -0.16 3.05 16 18 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 19 N -0.72 -16.95 4.95 -53.45 -0.26 -17.22 16 20 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 21 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 24 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 28 H 0.22 1.54 7.80 -54.08 -0.42 1.11 16 29 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 30 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.08 0.68 7.92 -51.93 -0.41 0.26 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 34 H 0.40 5.89 8.38 -40.82 -0.34 5.54 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -32.76 369.50 -8.00 -40.75 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -7.30 Total: 12.96 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.69 Total: -3.07 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.20 Total: -55.28 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.75 Total: -17.48 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.76 -8.00 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226178674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.026 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds