Wall clock time and date at job start Tue Mar 31 2020 07:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47251 * 211.93516 * 3 2 1 5 5 C 1.42905 * 114.00074 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46610 * 329.99409 * 5 4 3 7 7 C 1.52997 * 109.47264 * 89.99687 * 5 4 3 8 8 C 1.50697 * 109.46996 * 210.00118 * 5 4 3 9 9 O 1.21285 * 120.00040 * 354.99689 * 8 5 4 10 10 N 1.34778 * 119.99902 * 174.99831 * 8 5 4 11 11 C 1.46505 * 119.99823 * 179.97438 * 10 8 5 12 12 H 1.09006 * 109.46910 * 35.00167 * 11 10 8 13 13 C 1.52996 * 109.46977 * 275.00257 * 11 10 8 14 14 C 1.53000 * 109.46962 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47513 * 59.99746 * 14 13 11 16 16 C 1.53005 * 109.47233 * 300.00189 * 15 14 13 17 17 C 1.52997 * 109.46978 * 154.99908 * 11 10 8 18 18 H 1.09006 * 109.47088 * 60.00369 * 17 11 10 19 19 N 1.46499 * 109.47136 * 300.00405 * 17 11 10 20 20 C 1.36936 * 119.99930 * 155.00452 * 19 17 11 21 21 H 1.08006 * 120.00238 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00112 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99620 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00061 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47151 * 60.00045 * 24 22 20 26 26 H 1.48502 * 109.47093 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47311 * 299.99832 * 24 22 20 28 28 H 4.38446 * 5.44531 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47417 * 91.93096 * 3 2 1 30 30 H 1.09003 * 109.47628 * 331.93730 * 3 2 1 31 31 H 1.09002 * 109.47153 * 179.97438 * 7 5 4 32 32 H 1.09001 * 109.46832 * 60.00108 * 7 5 4 33 33 H 1.09004 * 109.47261 * 300.00089 * 7 5 4 34 34 H 0.96996 * 120.00226 * 0.02562 * 10 8 5 35 35 H 1.09006 * 109.47228 * 299.99716 * 13 11 10 36 36 H 1.08998 * 109.47728 * 60.00438 * 13 11 10 37 37 H 1.09000 * 109.47614 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.46923 * 299.99271 * 14 13 11 39 39 H 1.08998 * 109.47703 * 60.00031 * 15 14 13 40 40 H 1.09000 * 109.47672 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.47340 * 180.02562 * 16 15 14 42 42 H 1.09005 * 109.46624 * 300.00120 * 16 15 14 43 43 H 0.96994 * 119.99857 * 334.99172 * 19 17 11 44 44 H 0.97000 * 119.99955 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1218 1.1442 0.7126 5 6 4.5463 1.2409 0.7718 6 1 4.9794 0.2408 0.7536 7 6 5.0538 2.0385 -0.4311 8 6 4.9499 1.9398 2.0445 9 8 4.1014 2.3982 2.7799 10 7 6.2538 2.0555 2.3654 11 6 6.6461 2.7354 3.6024 12 1 5.9073 2.5336 4.3780 13 6 6.7248 4.2428 3.3528 14 6 7.1352 4.9529 4.6445 15 6 8.5033 4.4387 5.0966 16 6 8.4247 2.9312 5.3462 17 6 8.0142 2.2212 4.0551 18 1 8.7530 2.4231 3.2795 19 7 7.9388 0.7778 4.2940 20 6 9.0683 0.0090 4.2035 21 1 10.0147 0.4666 3.9557 22 6 8.9970 -1.3587 4.4304 23 7 7.8437 -1.9162 4.7329 24 14 10.5376 -2.4076 4.3063 25 1 11.5409 -1.9322 5.2926 26 1 10.1962 -3.8243 4.5919 27 1 11.1007 -2.3001 2.9364 28 1 -1.0502 -0.0003 0.0000 29 1 3.0093 0.0354 -1.0271 30 1 3.0098 -0.9060 0.4834 31 1 6.1404 2.1127 -0.3857 32 1 4.6207 3.0386 -0.4128 33 1 4.7619 1.5330 -1.3516 34 1 6.9324 1.6892 1.7771 35 1 7.4637 4.4447 2.5772 36 1 5.7502 4.6092 3.0304 37 1 7.1917 6.0268 4.4667 38 1 6.3966 4.7512 5.4204 39 1 9.2419 4.6404 4.3209 40 1 8.7955 4.9442 6.0171 41 1 9.3993 2.5649 5.6688 42 1 7.6861 2.7295 6.1221 43 1 7.0888 0.3668 4.5164 44 1 7.7939 -2.8718 4.8918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226178674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:57 Heat of formation + Delta-G solvation = -51.141452 kcal Electronic energy + Delta-G solvation = -24196.328738 eV Core-core repulsion = 20728.217728 eV Total energy + Delta-G solvation = -3468.111010 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27614 -39.68829 -38.52089 -35.80219 -35.19831 -34.41459 -33.00454 -32.39519 -30.41560 -29.20883 -28.09491 -25.71422 -25.20835 -23.24407 -22.47658 -21.38194 -20.78982 -19.62792 -19.16973 -18.22951 -17.97021 -17.07091 -16.75142 -16.54819 -16.07981 -15.78853 -15.46778 -15.32532 -14.91103 -14.62031 -14.55571 -14.07034 -14.04961 -13.70647 -13.51801 -13.39159 -13.17508 -12.90629 -12.75576 -12.43978 -12.25514 -12.15625 -12.05334 -11.99749 -11.72092 -11.62912 -11.56927 -11.42801 -11.10281 -10.96603 -10.81025 -10.41208 -9.95280 -8.98308 -7.89401 -5.18642 1.35352 1.50234 1.52388 1.58232 1.62196 1.79798 2.15271 2.58742 3.02648 3.43586 3.55991 3.68074 3.73101 3.84809 3.92979 4.07558 4.15289 4.23871 4.27390 4.33349 4.43079 4.45023 4.51215 4.60424 4.70998 4.71450 4.79980 4.96212 4.99269 5.02801 5.16356 5.20258 5.25141 5.30876 5.32057 5.47558 5.54274 5.57882 5.68358 5.97982 6.29969 6.57510 6.61903 7.27877 7.36843 8.10421 8.34966 9.33537 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.004885 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.613976 B = 5730.334973 C = 7677.614182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.240 4.240 3 C 0.162 3.838 4 O -0.384 6.384 5 C 0.071 3.929 6 H 0.105 0.895 7 C -0.159 4.159 8 C 0.510 3.490 9 O -0.579 6.579 10 N -0.697 5.697 11 C 0.148 3.852 12 H 0.047 0.953 13 C -0.114 4.114 14 C -0.111 4.111 15 C -0.109 4.109 16 C -0.129 4.129 17 C 0.174 3.826 18 H 0.063 0.937 19 N -0.732 5.732 20 C -0.232 4.232 21 H 0.081 0.919 22 C -0.072 4.072 23 N -0.971 5.971 24 Si 0.968 3.032 25 H -0.283 1.283 26 H -0.303 1.303 27 H -0.273 1.273 28 H 0.257 0.743 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.411 0.589 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.037 0.963 43 H 0.368 0.632 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 10.393 -11.817 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.240 4.240 3 C 0.087 3.913 4 O -0.303 6.303 5 C 0.011 3.989 6 H 0.123 0.877 7 C -0.217 4.217 8 C 0.296 3.704 9 O -0.458 6.458 10 N -0.348 5.348 11 C 0.043 3.957 12 H 0.066 0.934 13 C -0.153 4.153 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.170 4.170 17 C 0.065 3.935 18 H 0.081 0.919 19 N -0.371 5.371 20 C -0.363 4.363 21 H 0.099 0.901 22 C -0.265 4.265 23 N -0.622 5.622 24 Si 0.798 3.202 25 H -0.209 1.209 26 H -0.230 1.230 27 H -0.199 1.199 28 H 0.273 0.727 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.247 0.753 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.199 0.801 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.683 10.787 -11.259 16.280 hybrid contribution 0.447 -1.640 0.300 1.726 sum -4.237 9.146 -10.959 14.890 Atomic orbital electron populations 1.25885 0.96825 0.96703 0.98347 1.23092 0.94957 1.03373 1.02620 1.19423 0.84953 0.88731 0.98177 1.88042 1.20175 1.45559 1.76552 1.22040 0.82254 1.01161 0.93475 0.87708 1.22205 1.02743 1.00587 0.96163 1.20896 0.82624 0.79407 0.87473 1.90661 1.51508 1.50225 1.53418 1.45774 1.06637 1.58056 1.24323 1.21169 0.96133 0.92732 0.85706 0.93443 1.21802 1.01650 0.92518 0.99341 1.21483 0.96876 1.00412 0.96165 1.21512 0.97352 0.93828 1.01995 1.22101 1.00536 0.96010 0.98378 1.20650 0.93730 0.83309 0.95763 0.91868 1.42594 1.07909 1.02601 1.83999 1.19563 0.89289 0.89596 1.37892 0.90137 1.25473 0.99178 0.98246 1.03564 1.69840 1.25436 1.10445 1.56457 0.85291 0.79385 0.77328 0.78197 1.20905 1.23001 1.19906 0.72730 0.87710 0.90254 0.88929 0.92072 0.88894 0.75282 0.89769 0.92780 0.89420 0.93196 0.90637 0.90968 0.93026 0.94395 0.80133 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 19.25 74.32 1.43 -1.97 16 2 C -0.24 -6.23 13.73 31.13 0.43 -5.80 16 3 C 0.16 3.92 6.22 70.18 0.44 4.35 16 4 O -0.38 -12.07 9.48 -129.99 -1.23 -13.30 16 5 C 0.07 1.94 3.13 29.85 0.09 2.03 16 6 H 0.11 2.54 7.79 -2.39 -0.02 2.52 16 7 C -0.16 -2.98 9.48 71.98 0.68 -2.30 16 8 C 0.51 17.93 7.14 87.66 0.63 18.55 16 9 O -0.58 -25.79 16.17 15.94 0.26 -25.53 16 10 N -0.70 -22.32 4.87 -442.53 -2.16 -24.47 16 11 C 0.15 5.03 1.98 44.99 0.09 5.12 16 12 H 0.05 1.97 7.58 -2.38 -0.02 1.95 16 13 C -0.11 -3.06 5.49 30.59 0.17 -2.89 16 14 C -0.11 -2.66 5.92 30.59 0.18 -2.48 16 15 C -0.11 -2.66 5.92 30.59 0.18 -2.48 16 16 C -0.13 -4.37 5.50 30.58 0.17 -4.20 16 17 C 0.17 6.34 2.29 44.98 0.10 6.44 16 18 H 0.06 2.17 8.08 -2.38 -0.02 2.15 16 19 N -0.73 -34.83 4.95 -323.01 -1.60 -36.43 16 20 C -0.23 -12.01 9.93 84.03 0.83 -11.17 16 21 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 22 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 23 N -0.97 -58.37 13.06 21.65 0.28 -58.09 16 24 Si 0.97 44.44 29.55 68.60 2.03 46.47 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 28 H 0.26 2.94 7.80 -4.41 -0.03 2.90 16 29 H 0.11 1.79 7.87 -2.39 -0.02 1.77 16 30 H 0.08 1.82 8.09 -2.39 -0.02 1.80 16 31 H 0.09 1.41 7.92 -2.39 -0.02 1.39 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.29 7.87 -2.38 -0.02 1.27 16 34 H 0.41 11.65 8.38 -92.71 -0.78 10.87 16 35 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.37 19.92 7.80 -92.71 -0.72 19.20 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -73.70 369.50 2.95 -70.74 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -0.51 Total: 40.91 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 5.89 Total: -0.31 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -3.47 Total: -118.99 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.98 Total: -38.83 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -73.70 2.95 -70.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226178674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.603 kcal (2) G-P(sol) polarization free energy of solvation -73.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds