Wall clock time and date at job start Tue Mar 31 2020 07:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47177 * 2 1 4 4 C 1.53004 * 109.47107 * 119.99553 * 2 1 3 5 5 C 1.52997 * 117.49923 * 300.00415 * 4 2 1 6 6 C 1.53001 * 60.03211 * 252.49483 * 5 4 2 7 7 N 1.46496 * 109.47377 * 239.99721 * 2 1 3 8 8 C 1.46505 * 120.00104 * 300.00030 * 7 2 1 9 9 C 1.34780 * 119.99932 * 120.00058 * 7 2 1 10 10 O 1.21347 * 119.99804 * 356.44691 * 9 7 2 11 11 C 1.49448 * 119.99793 * 176.44645 * 9 7 2 12 12 O 1.21342 * 120.00229 * 5.93681 * 11 9 7 13 13 N 1.34782 * 119.99709 * 185.93256 * 11 9 7 14 14 C 1.46506 * 119.99702 * 174.98557 * 13 11 9 15 15 C 1.53004 * 109.46732 * 185.00199 * 14 13 11 16 16 C 1.50702 * 115.54885 * 65.02791 * 15 14 13 17 17 H 1.08003 * 119.99565 * 274.72992 * 16 15 14 18 18 C 1.37870 * 120.00210 * 94.73228 * 16 15 14 19 19 N 1.31520 * 120.00077 * 4.91319 * 18 16 15 20 20 Si 1.86801 * 120.00163 * 184.92132 * 18 16 15 21 21 H 1.48499 * 109.47305 * 89.99400 * 20 18 16 22 22 H 1.48493 * 109.47278 * 209.99804 * 20 18 16 23 23 H 1.48500 * 109.46939 * 329.99598 * 20 18 16 24 24 C 1.53000 * 117.49778 * 279.35367 * 15 14 13 25 25 C 1.52998 * 117.49622 * 210.69497 * 15 14 13 26 26 H 1.09000 * 109.46920 * 299.99919 * 1 2 3 27 27 H 1.09000 * 109.47098 * 60.00235 * 1 2 3 28 28 H 1.09002 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.09005 * 115.55860 * 85.69470 * 4 2 1 30 30 H 1.08994 * 117.50096 * 359.97438 * 5 4 2 31 31 H 1.08997 * 117.49858 * 144.99806 * 5 4 2 32 32 H 1.09004 * 117.50013 * 107.49824 * 6 5 4 33 33 H 1.09001 * 117.50264 * 252.52641 * 6 5 4 34 34 H 1.08993 * 109.46772 * 95.97445 * 8 7 2 35 35 H 1.08996 * 109.46643 * 215.97407 * 8 7 2 36 36 H 1.08995 * 109.47045 * 335.97403 * 8 7 2 37 37 H 0.96995 * 120.00130 * 354.98336 * 13 11 9 38 38 H 1.09001 * 109.46917 * 305.00458 * 14 13 11 39 39 H 1.09001 * 109.46988 * 65.00466 * 14 13 11 40 40 H 0.96999 * 120.00181 * 185.00467 * 19 18 16 41 41 H 1.09002 * 117.49865 * 0.02562 * 24 15 14 42 42 H 1.09006 * 117.49606 * 145.02477 * 24 15 14 43 43 H 1.09007 * 117.49827 * 214.98460 * 25 15 14 44 44 H 1.08998 * 117.50097 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6357 -0.1494 2.6096 6 6 3.0744 0.0054 2.1126 7 7 2.0184 -0.6906 -1.1961 8 6 1.6645 -2.0933 -1.4279 9 6 2.7933 -0.0356 -2.0833 10 8 3.0333 1.1433 -1.9249 11 6 3.3569 -0.7613 -3.2619 12 8 3.0311 -1.9097 -3.4800 13 7 4.2269 -0.1402 -4.0828 14 6 4.8635 -0.8833 -5.1731 15 6 5.8904 0.0122 -5.8691 16 6 7.0694 0.4257 -5.0264 17 1 6.9962 1.2894 -4.3821 18 6 8.2414 -0.2985 -5.0780 19 7 8.3643 -1.2908 -5.9325 20 14 9.6550 0.1294 -3.9342 21 1 9.5233 -0.6444 -2.6736 22 1 10.9430 -0.2094 -4.5908 23 1 9.6221 1.5823 -3.6289 24 6 5.3688 1.0187 -6.8966 25 6 6.1358 -0.2218 -7.3610 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.1272 -1.8044 1.1644 30 1 1.0067 0.7407 2.6146 31 1 1.4564 -0.8564 3.4196 32 1 3.3916 0.9973 1.7905 33 1 3.8416 -0.6000 2.5952 34 1 0.7984 -2.1452 -2.0875 35 1 2.5058 -2.6083 -1.8916 36 1 1.4262 -2.5698 -0.4770 37 1 4.4315 0.7989 -3.9516 38 1 5.3635 -1.7637 -4.7693 39 1 4.1055 -1.1938 -5.8922 40 1 9.1594 -1.8463 -5.9197 41 1 4.2939 1.0432 -7.0764 42 1 5.8786 1.9799 -6.9634 43 1 7.1500 -0.0764 -7.7332 44 1 5.5661 -1.0141 -7.8466 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261403453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:34 Heat of formation + Delta-G solvation = -11.213138 kcal Electronic energy + Delta-G solvation = -24103.322360 eV Core-core repulsion = 20636.942771 eV Total energy + Delta-G solvation = -3466.379588 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59135 -38.72662 -37.58935 -36.78021 -35.35587 -33.36973 -31.91855 -30.88085 -27.28341 -26.78610 -25.54539 -24.76045 -22.77182 -22.46283 -21.12578 -20.02575 -19.66418 -19.14530 -17.49026 -17.15502 -16.07976 -15.98019 -15.71675 -15.08376 -14.75686 -14.64595 -14.34596 -13.91300 -13.76736 -13.37352 -13.16139 -12.82464 -12.70036 -12.54041 -12.38116 -12.18257 -11.92107 -11.62749 -11.53969 -11.19912 -11.02544 -10.90825 -10.87620 -10.62861 -10.53440 -10.22907 -10.19624 -9.55297 -9.15774 -9.04351 -8.72735 -8.46811 -8.38435 -8.15615 -6.08878 -4.18266 1.78537 2.55843 3.27042 3.34358 3.37392 3.54781 3.58032 3.89330 4.36030 4.37864 4.67728 4.75449 4.83512 5.00153 5.14700 5.15854 5.16372 5.20886 5.38093 5.40941 5.50134 5.63217 5.70817 5.76027 5.88629 5.92183 5.96527 5.98010 6.12248 6.29628 6.38977 6.42866 6.47564 6.65754 6.76458 7.01720 7.12513 7.16424 7.34247 7.60267 7.78480 7.80686 8.13913 8.32217 8.51217 8.84164 9.49056 10.97576 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.004010 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.925100 B = 6980.189642 C = 7877.116246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.163 3.837 3 H 0.103 0.897 4 C -0.167 4.167 5 C -0.171 4.171 6 C -0.175 4.175 7 N -0.584 5.584 8 C 0.066 3.934 9 C 0.509 3.491 10 O -0.524 6.524 11 C 0.497 3.503 12 O -0.534 6.534 13 N -0.667 5.667 14 C 0.160 3.840 15 C 0.014 3.986 16 C -0.496 4.496 17 H 0.061 0.939 18 C 0.073 3.927 19 N -0.876 5.876 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.213 4.213 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.061 0.939 37 H 0.413 0.587 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.261 0.739 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.045 -0.083 11.980 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 H 0.121 0.879 4 C -0.186 4.186 5 C -0.209 4.209 6 C -0.212 4.212 7 N -0.318 5.318 8 C -0.076 4.076 9 C 0.292 3.708 10 O -0.399 6.399 11 C 0.277 3.723 12 O -0.413 6.413 13 N -0.316 5.316 14 C 0.037 3.963 15 C 0.013 3.987 16 C -0.534 4.534 17 H 0.079 0.921 18 C -0.130 4.130 19 N -0.513 5.513 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.251 4.251 25 C -0.168 4.168 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.249 0.751 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.945 -0.374 11.761 18.246 hybrid contribution 0.916 0.375 0.744 1.238 sum -13.029 0.002 12.505 18.059 Atomic orbital electron populations 1.22082 0.94283 1.02627 1.02406 1.20689 0.94088 0.97229 0.82049 0.87940 1.22643 1.04804 0.99852 0.91336 1.22925 0.98421 1.03142 0.96372 1.23060 0.92406 1.02329 1.03437 1.47691 1.49060 1.13459 1.21567 1.22359 1.03802 0.80439 1.01021 1.20493 0.79105 0.87019 0.84202 1.90723 1.58524 1.15369 1.75322 1.19899 0.81415 0.86839 0.84108 1.90604 1.60469 1.17436 1.72810 1.45894 1.40684 1.15406 1.29597 1.21255 0.93234 0.95168 0.86611 1.19063 0.94565 0.96004 0.89073 1.20380 0.94992 1.13408 1.24622 0.92110 1.24969 0.97963 0.95378 0.94713 1.70013 1.28838 1.18575 1.33863 0.86641 0.81770 0.78971 0.80995 1.20611 1.21209 1.19746 1.23095 0.97215 0.95166 1.09596 1.22457 1.00006 0.96275 0.98075 0.91268 0.92122 0.92016 0.87296 0.88611 0.88685 0.88433 0.88725 0.92449 0.87174 0.91984 0.75146 0.90911 0.93628 0.92905 0.91786 0.90241 0.88626 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.04 37.16 0.34 -1.07 16 2 C 0.16 1.85 2.86 -67.93 -0.19 1.65 16 3 H 0.10 1.33 6.66 -51.93 -0.35 0.99 16 4 C -0.17 -1.65 5.13 -90.58 -0.46 -2.11 16 5 C -0.17 -1.35 9.73 -26.73 -0.26 -1.61 16 6 C -0.18 -1.72 10.18 -26.69 -0.27 -1.99 16 7 N -0.58 -8.00 2.76 -174.45 -0.48 -8.48 16 8 C 0.07 0.79 8.52 59.85 0.51 1.30 16 9 C 0.51 8.66 7.73 -11.58 -0.09 8.57 16 10 O -0.52 -9.82 15.82 5.50 0.09 -9.74 16 11 C 0.50 9.31 7.77 -11.58 -0.09 9.22 16 12 O -0.53 -10.38 13.15 5.50 0.07 -10.31 16 13 N -0.67 -13.25 5.45 -60.72 -0.33 -13.58 16 14 C 0.16 3.48 5.51 -4.04 -0.02 3.46 16 15 C 0.01 0.32 1.63 -155.66 -0.25 0.07 16 16 C -0.50 -12.93 8.77 -34.44 -0.30 -13.23 16 17 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 18 C 0.07 1.95 5.41 -17.82 -0.10 1.85 16 19 N -0.88 -24.01 11.78 55.43 0.65 -23.36 16 20 Si 0.89 20.81 29.54 -169.99 -5.02 15.78 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 24 C -0.21 -4.49 9.96 -26.69 -0.27 -4.76 16 25 C -0.13 -2.97 8.83 -26.69 -0.24 -3.21 16 26 H 0.07 0.51 7.29 -51.93 -0.38 0.13 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 29 H 0.11 1.05 6.67 -51.93 -0.35 0.71 16 30 H 0.10 0.69 7.61 -51.93 -0.40 0.29 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.11 1.58 5.36 -51.94 -0.28 1.30 16 36 H 0.06 0.58 6.51 -51.93 -0.34 0.24 16 37 H 0.41 8.14 7.94 -40.82 -0.32 7.82 16 38 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 40 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 43 H 0.10 2.39 7.52 -51.93 -0.39 2.00 16 44 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -28.41 361.53 -8.24 -36.65 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.96 Total: 9.44 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.70 Total: -1.86 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.16 Total: -45.42 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.16 Total: -20.04 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.41 -8.24 -36.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261403453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.437 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds