Wall clock time and date at job start Tue Mar 31 2020 07:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47177 * 2 1 4 4 C 1.53004 * 109.47107 * 119.99553 * 2 1 3 5 5 C 1.52997 * 117.49923 * 300.00415 * 4 2 1 6 6 C 1.53001 * 60.03211 * 252.49483 * 5 4 2 7 7 N 1.46496 * 109.47377 * 239.99721 * 2 1 3 8 8 C 1.46505 * 120.00104 * 300.00030 * 7 2 1 9 9 C 1.34780 * 119.99932 * 120.00058 * 7 2 1 10 10 O 1.21347 * 119.99804 * 356.44691 * 9 7 2 11 11 C 1.49448 * 119.99793 * 176.44645 * 9 7 2 12 12 O 1.21342 * 120.00229 * 5.93681 * 11 9 7 13 13 N 1.34782 * 119.99709 * 185.93256 * 11 9 7 14 14 C 1.46506 * 119.99702 * 174.98557 * 13 11 9 15 15 C 1.53004 * 109.46732 * 185.00199 * 14 13 11 16 16 C 1.50702 * 115.54885 * 65.02791 * 15 14 13 17 17 H 1.08003 * 119.99565 * 274.72992 * 16 15 14 18 18 C 1.37870 * 120.00210 * 94.73228 * 16 15 14 19 19 N 1.31520 * 120.00077 * 4.91319 * 18 16 15 20 20 Si 1.86801 * 120.00163 * 184.92132 * 18 16 15 21 21 H 1.48499 * 109.47305 * 89.99400 * 20 18 16 22 22 H 1.48493 * 109.47278 * 209.99804 * 20 18 16 23 23 H 1.48500 * 109.46939 * 329.99598 * 20 18 16 24 24 C 1.53000 * 117.49778 * 279.35367 * 15 14 13 25 25 C 1.52998 * 117.49622 * 210.69497 * 15 14 13 26 26 H 1.09000 * 109.46920 * 299.99919 * 1 2 3 27 27 H 1.09000 * 109.47098 * 60.00235 * 1 2 3 28 28 H 1.09002 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.09005 * 115.55860 * 85.69470 * 4 2 1 30 30 H 1.08994 * 117.50096 * 359.97438 * 5 4 2 31 31 H 1.08997 * 117.49858 * 144.99806 * 5 4 2 32 32 H 1.09004 * 117.50013 * 107.49824 * 6 5 4 33 33 H 1.09001 * 117.50264 * 252.52641 * 6 5 4 34 34 H 1.08993 * 109.46772 * 95.97445 * 8 7 2 35 35 H 1.08996 * 109.46643 * 215.97407 * 8 7 2 36 36 H 1.08995 * 109.47045 * 335.97403 * 8 7 2 37 37 H 0.96995 * 120.00130 * 354.98336 * 13 11 9 38 38 H 1.09001 * 109.46917 * 305.00458 * 14 13 11 39 39 H 1.09001 * 109.46988 * 65.00466 * 14 13 11 40 40 H 0.96999 * 120.00181 * 185.00467 * 19 18 16 41 41 H 1.09002 * 117.49865 * 0.02562 * 24 15 14 42 42 H 1.09006 * 117.49606 * 145.02477 * 24 15 14 43 43 H 1.09007 * 117.49827 * 214.98460 * 25 15 14 44 44 H 1.08998 * 117.50097 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6357 -0.1494 2.6096 6 6 3.0744 0.0054 2.1126 7 7 2.0184 -0.6906 -1.1961 8 6 1.6645 -2.0933 -1.4279 9 6 2.7933 -0.0356 -2.0833 10 8 3.0333 1.1433 -1.9249 11 6 3.3569 -0.7613 -3.2619 12 8 3.0311 -1.9097 -3.4800 13 7 4.2269 -0.1402 -4.0828 14 6 4.8635 -0.8833 -5.1731 15 6 5.8904 0.0122 -5.8691 16 6 7.0694 0.4257 -5.0264 17 1 6.9962 1.2894 -4.3821 18 6 8.2414 -0.2985 -5.0780 19 7 8.3643 -1.2908 -5.9325 20 14 9.6550 0.1294 -3.9342 21 1 9.5233 -0.6444 -2.6736 22 1 10.9430 -0.2094 -4.5908 23 1 9.6221 1.5823 -3.6289 24 6 5.3688 1.0187 -6.8966 25 6 6.1358 -0.2218 -7.3610 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.1272 -1.8044 1.1644 30 1 1.0067 0.7407 2.6146 31 1 1.4564 -0.8564 3.4196 32 1 3.3916 0.9973 1.7905 33 1 3.8416 -0.6000 2.5952 34 1 0.7984 -2.1452 -2.0875 35 1 2.5058 -2.6083 -1.8916 36 1 1.4262 -2.5698 -0.4770 37 1 4.4315 0.7989 -3.9516 38 1 5.3635 -1.7637 -4.7693 39 1 4.1055 -1.1938 -5.8922 40 1 9.1594 -1.8463 -5.9197 41 1 4.2939 1.0432 -7.0764 42 1 5.8786 1.9799 -6.9634 43 1 7.1500 -0.0764 -7.7332 44 1 5.5661 -1.0141 -7.8466 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261403453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:34 Heat of formation + Delta-G solvation = -27.464622 kcal Electronic energy + Delta-G solvation = -24104.027077 eV Core-core repulsion = 20636.942771 eV Total energy + Delta-G solvation = -3467.084305 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.91364 -40.01376 -38.71361 -38.50618 -36.46274 -34.94489 -33.91205 -31.77295 -28.84280 -27.95149 -27.41203 -25.89682 -23.96558 -23.16055 -22.87992 -21.46771 -21.09444 -20.40777 -18.93511 -18.37062 -17.89197 -17.27991 -16.94666 -16.67709 -16.33840 -15.92543 -15.61383 -15.22423 -15.16074 -14.72761 -14.45065 -14.22380 -13.84663 -13.72043 -13.48260 -13.38520 -13.29218 -12.96726 -12.93054 -12.82154 -12.40944 -12.38524 -12.32998 -11.98821 -11.85517 -11.38924 -11.35864 -11.04741 -10.98125 -10.49054 -10.38397 -10.14315 -9.97891 -9.75134 -8.11718 -6.25078 0.37145 1.29572 1.39302 1.42263 1.50171 2.14550 2.40387 2.49649 2.89497 3.14286 3.33014 3.57535 3.62116 3.91953 4.04496 4.17194 4.21164 4.29693 4.34645 4.41980 4.51426 4.61964 4.66083 4.69063 4.75011 4.82181 4.85800 4.94321 4.99931 5.02007 5.04213 5.15032 5.25489 5.28299 5.31449 5.37245 5.49220 5.56459 5.72930 5.77755 5.94528 6.33567 6.35728 6.72835 6.81537 6.99578 7.43915 8.94088 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.004010 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.925100 B = 6980.189642 C = 7877.116246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.176 4.176 5 C -0.144 4.144 6 C -0.195 4.195 7 N -0.573 5.573 8 C 0.065 3.935 9 C 0.507 3.493 10 O -0.548 6.548 11 C 0.496 3.504 12 O -0.541 6.541 13 N -0.671 5.671 14 C 0.176 3.824 15 C -0.008 4.008 16 C -0.506 4.506 17 H 0.054 0.946 18 C 0.030 3.970 19 N -0.902 5.902 20 Si 0.943 3.057 21 H -0.281 1.281 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.186 4.186 25 C -0.136 4.136 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.413 0.587 38 H 0.042 0.958 39 H 0.056 0.944 40 H 0.260 0.740 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.854 -0.114 13.635 20.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.056 3.944 3 H 0.101 0.899 4 C -0.194 4.194 5 C -0.181 4.181 6 C -0.232 4.232 7 N -0.305 5.305 8 C -0.076 4.076 9 C 0.289 3.711 10 O -0.427 6.427 11 C 0.277 3.723 12 O -0.421 6.421 13 N -0.321 5.321 14 C 0.053 3.947 15 C -0.009 4.009 16 C -0.544 4.544 17 H 0.072 0.928 18 C -0.171 4.171 19 N -0.539 5.539 20 Si 0.769 3.231 21 H -0.207 1.207 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.223 4.223 25 C -0.174 4.174 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.249 0.751 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.784 -0.418 13.446 20.738 hybrid contribution 1.427 0.364 0.274 1.498 sum -14.356 -0.054 13.719 19.858 Atomic orbital electron populations 1.22053 0.91958 1.03684 1.03011 1.20905 0.95799 0.96152 0.81548 0.89937 1.22608 1.05479 0.99877 0.91474 1.23028 0.96471 1.03413 0.95199 1.23092 0.93814 1.01761 1.04547 1.47851 1.47295 1.14039 1.21289 1.22398 1.02989 0.79298 1.02915 1.20161 0.79906 0.86731 0.84298 1.90712 1.59911 1.16137 1.75908 1.20269 0.80900 0.86767 0.84342 1.90611 1.60655 1.17793 1.73060 1.45813 1.41217 1.15303 1.29730 1.20878 0.92963 0.93858 0.87050 1.19108 0.94793 0.97763 0.89236 1.20636 0.96061 1.13048 1.24665 0.92805 1.25594 1.00035 0.95526 0.95978 1.70108 1.29364 1.19444 1.35012 0.85792 0.79358 0.78716 0.79230 1.20721 1.20957 1.19376 1.23068 0.98445 0.94166 1.06653 1.22352 0.99242 0.97965 0.97816 0.89137 0.93093 0.90674 0.86744 0.87547 0.86793 0.89890 0.88512 0.91577 0.89499 0.88677 0.75125 0.93919 0.92543 0.93067 0.89167 0.90320 0.91204 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.04 71.98 0.65 -1.62 16 2 C 0.16 3.33 2.86 44.99 0.13 3.46 16 3 H 0.08 2.11 6.66 -2.39 -0.02 2.09 16 4 C -0.18 -3.06 5.13 -10.77 -0.06 -3.11 16 5 C -0.14 -1.83 9.73 30.59 0.30 -1.53 16 6 C -0.20 -3.58 10.18 30.62 0.31 -3.27 16 7 N -0.57 -15.04 2.76 -824.18 -2.28 -17.31 16 8 C 0.07 1.45 8.52 127.77 1.09 2.54 16 9 C 0.51 17.17 7.73 87.27 0.68 17.85 16 10 O -0.55 -20.74 15.82 -3.24 -0.05 -20.80 16 11 C 0.50 18.63 7.77 87.27 0.68 19.30 16 12 O -0.54 -21.02 13.15 -3.22 -0.04 -21.06 16 13 N -0.67 -26.84 5.45 -464.39 -2.53 -29.37 16 14 C 0.18 7.71 5.51 86.38 0.48 8.19 16 15 C -0.01 -0.39 1.63 -52.93 -0.09 -0.48 16 16 C -0.51 -26.67 8.77 25.60 0.22 -26.45 16 17 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 18 C 0.03 1.59 5.41 84.65 0.46 2.05 16 19 N -0.90 -50.24 11.78 21.45 0.25 -49.99 16 20 Si 0.94 43.16 29.54 68.60 2.03 45.18 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C -0.19 -7.63 9.96 30.62 0.30 -7.32 16 25 C -0.14 -6.19 8.83 30.62 0.27 -5.92 16 26 H 0.09 1.01 7.29 -2.39 -0.02 0.99 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.96 7.67 -2.39 -0.02 0.94 16 29 H 0.11 1.88 6.67 -2.38 -0.02 1.87 16 30 H 0.11 1.15 7.61 -2.39 -0.02 1.14 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.75 8.05 -2.38 -0.02 1.73 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 2.42 5.36 -2.46 -0.01 2.41 16 36 H 0.09 1.49 6.51 -2.39 -0.02 1.48 16 37 H 0.41 16.45 7.94 -92.71 -0.74 15.71 16 38 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 2.33 8.09 -2.39 -0.02 2.31 16 40 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 41 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 43 H 0.07 3.55 7.52 -2.38 -0.02 3.53 16 44 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -61.42 361.53 3.07 -58.36 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.26 Total: 31.30 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.42 Total: 3.69 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -4.55 Total: -96.67 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -0.09 Total: -41.86 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -61.42 3.07 -58.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261403453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.894 kcal (2) G-P(sol) polarization free energy of solvation -61.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds