Wall clock time and date at job start Tue Mar 31 2020 07:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46708 * 2 1 4 4 C 1.52998 * 109.47087 * 240.00616 * 2 1 3 5 5 C 1.53001 * 117.50470 * 128.61987 * 4 2 1 6 6 C 1.52998 * 117.50350 * 59.99446 * 4 2 1 7 7 N 1.46493 * 109.47482 * 120.00328 * 2 1 3 8 8 C 1.46503 * 120.00097 * 59.99681 * 7 2 1 9 9 C 1.34777 * 120.00022 * 240.00478 * 7 2 1 10 10 O 1.21355 * 119.99918 * 3.25136 * 9 7 2 11 11 C 1.49449 * 120.00107 * 183.25543 * 9 7 2 12 12 O 1.21350 * 120.00247 * 353.87803 * 11 9 7 13 13 N 1.34775 * 120.00163 * 173.59817 * 11 9 7 14 14 C 1.46498 * 120.00233 * 185.01313 * 13 11 9 15 15 C 1.53004 * 109.47264 * 184.97157 * 14 13 11 16 16 C 1.50696 * 115.55007 * 305.47011 * 15 14 13 17 17 H 1.08002 * 120.00135 * 149.46815 * 16 15 14 18 18 C 1.37885 * 120.00214 * 329.46666 * 16 15 14 19 19 N 1.31510 * 119.99771 * 4.72247 * 18 16 15 20 20 Si 1.86790 * 120.00066 * 184.72845 * 18 16 15 21 21 H 1.48497 * 109.47586 * 89.99726 * 20 18 16 22 22 H 1.48503 * 109.47154 * 210.00210 * 20 18 16 23 23 H 1.48504 * 109.47221 * 329.99717 * 20 18 16 24 24 C 1.53005 * 117.49600 * 159.79991 * 15 14 13 25 25 C 1.52997 * 117.49599 * 91.14163 * 15 14 13 26 26 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47251 * 299.99849 * 1 2 3 28 28 H 1.09007 * 109.47342 * 60.00046 * 1 2 3 29 29 H 1.09003 * 115.55083 * 274.32599 * 4 2 1 30 30 H 1.09004 * 117.49233 * 0.02562 * 5 4 2 31 31 H 1.08994 * 117.49986 * 145.01320 * 5 4 2 32 32 H 1.09004 * 117.50249 * 214.98048 * 6 4 2 33 33 H 1.09001 * 117.49549 * 0.02562 * 6 4 2 34 34 H 1.08995 * 109.47213 * 264.10349 * 8 7 2 35 35 H 1.09001 * 109.46771 * 24.10862 * 8 7 2 36 36 H 1.09000 * 109.47006 * 144.10468 * 8 7 2 37 37 H 0.97003 * 120.00185 * 5.01532 * 13 11 9 38 38 H 1.09000 * 109.47357 * 304.97781 * 14 13 11 39 39 H 1.09010 * 109.46889 * 64.97442 * 14 13 11 40 40 H 0.97000 * 120.00521 * 184.99614 * 19 18 16 41 41 H 1.08993 * 117.49957 * 0.02562 * 24 15 14 42 42 H 1.09003 * 117.49445 * 145.02353 * 24 15 14 43 43 H 1.08998 * 117.49524 * 214.97895 * 25 15 14 44 44 H 1.08997 * 117.49975 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.0740 0.0053 -2.1118 6 6 1.6356 -0.1494 -2.6096 7 7 2.0183 -0.6906 1.1960 8 6 1.6644 -2.0932 1.4279 9 6 2.7932 -0.0356 2.0833 10 8 3.0376 1.1421 1.9221 11 6 3.3513 -0.7597 3.2655 12 8 3.0186 -1.9052 3.4881 13 7 4.2285 -0.1422 4.0814 14 6 4.8594 -0.8849 5.1753 15 6 5.7081 0.0700 6.0172 16 6 6.7380 0.8657 5.2576 17 1 7.0205 1.8501 5.6005 18 6 7.3198 0.3371 4.1248 19 7 6.9100 -0.8206 3.6543 20 14 8.6899 1.2652 3.2585 21 1 10.0004 0.8534 3.8225 22 1 8.6565 0.9556 1.8065 23 1 8.5020 2.7248 3.4577 24 6 6.0616 -0.3670 7.4403 25 6 5.0348 0.7455 7.2136 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.1267 -1.8044 -1.1644 30 1 3.3914 0.9969 -1.7889 31 1 3.8415 -0.5999 -2.5942 32 1 1.4567 -0.8564 -3.4198 33 1 1.0066 0.7408 -2.6145 34 1 0.7975 -2.1451 2.0864 35 1 1.4274 -2.5701 0.4768 36 1 2.5052 -2.6080 1.8929 37 1 4.4422 0.7940 3.9443 38 1 4.0885 -1.3341 5.8015 39 1 5.4950 -1.6687 4.7631 40 1 7.3666 -1.2272 2.9012 41 1 5.6898 -1.3349 7.7765 42 1 7.0389 -0.0785 7.8272 43 1 5.3371 1.7653 7.4514 44 1 3.9872 0.5099 7.4006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261403454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:37 Heat of formation + Delta-G solvation = -5.922305 kcal Electronic energy + Delta-G solvation = -24601.826070 eV Core-core repulsion = 21135.675909 eV Total energy + Delta-G solvation = -3466.150161 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30576 -38.47000 -37.39347 -36.69714 -35.15545 -33.01513 -32.17970 -30.71388 -26.94638 -26.49867 -25.60056 -24.63271 -22.53951 -22.35577 -21.25776 -19.80004 -19.40377 -19.02733 -17.34863 -16.93046 -16.13793 -15.72420 -15.49731 -14.83951 -14.82628 -14.43745 -14.21057 -13.64580 -13.58952 -13.22458 -12.96083 -12.66306 -12.57981 -12.40162 -12.15806 -12.00417 -11.81908 -11.51838 -11.41625 -11.08023 -11.02070 -10.76479 -10.65173 -10.52371 -10.49463 -10.27478 -10.10867 -9.69205 -9.06474 -8.94719 -8.69157 -8.47275 -8.32269 -7.91954 -6.04821 -4.23015 2.11962 2.82122 3.23457 3.32231 3.34327 3.69793 3.92075 4.21089 4.30378 4.50574 4.79518 4.86590 4.88544 5.12674 5.23463 5.28296 5.34865 5.36572 5.47578 5.50387 5.62454 5.78762 5.81882 5.90354 5.97785 6.01388 6.02701 6.12501 6.26675 6.30002 6.49750 6.59273 6.65158 6.66316 6.84055 7.02068 7.22588 7.34061 7.47591 7.56576 7.88518 8.09245 8.26055 8.50871 8.78477 8.95646 9.39881 10.83676 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.004799 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.417473 B = 5833.338381 C = 6871.132903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.101 0.899 4 C -0.165 4.165 5 C -0.175 4.175 6 C -0.172 4.172 7 N -0.587 5.587 8 C 0.069 3.931 9 C 0.510 3.490 10 O -0.527 6.527 11 C 0.496 3.504 12 O -0.547 6.547 13 N -0.635 5.635 14 C 0.168 3.832 15 C 0.032 3.968 16 C -0.494 4.494 17 H 0.063 0.937 18 C 0.073 3.927 19 N -0.872 5.872 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.199 4.199 25 C -0.212 4.212 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.411 0.589 38 H 0.027 0.973 39 H 0.117 0.883 40 H 0.262 0.738 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 -1.365 -8.827 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.059 3.941 3 H 0.119 0.881 4 C -0.184 4.184 5 C -0.212 4.212 6 C -0.210 4.210 7 N -0.321 5.321 8 C -0.073 4.073 9 C 0.293 3.707 10 O -0.403 6.403 11 C 0.276 3.724 12 O -0.429 6.429 13 N -0.281 5.281 14 C 0.045 3.955 15 C 0.031 3.969 16 C -0.531 4.531 17 H 0.081 0.919 18 C -0.131 4.131 19 N -0.509 5.509 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.237 4.237 25 C -0.250 4.250 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.247 0.753 38 H 0.046 0.954 39 H 0.135 0.865 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.779 -1.627 -8.925 14.089 hybrid contribution 0.919 0.759 -0.514 1.298 sum -9.860 -0.868 -9.439 13.678 Atomic orbital electron populations 1.22076 0.94465 1.02519 1.02264 1.20647 0.93934 0.97248 0.82248 0.88079 1.22632 1.04631 0.99845 0.91327 1.23033 0.92344 1.02357 1.03488 1.22921 0.98452 1.03124 0.96479 1.47667 1.49402 1.13393 1.21590 1.22321 1.03763 0.80608 1.00635 1.20677 0.78650 0.86973 0.84375 1.90703 1.58286 1.15681 1.75592 1.19642 0.81950 0.86712 0.84097 1.90554 1.61815 1.17644 1.72904 1.45511 1.38633 1.15350 1.28655 1.21216 0.93208 0.95495 0.85549 1.19254 0.95877 0.96106 0.85658 1.20572 1.21664 1.02220 1.08607 0.91898 1.25008 0.96716 0.95307 0.96070 1.69914 1.38737 1.16929 1.25316 0.86503 0.82092 0.80291 0.78734 1.20552 1.21143 1.19700 1.22963 0.98677 0.96849 1.05242 1.22977 0.95878 0.96793 1.09304 0.92084 0.92170 0.91426 0.87345 0.88487 0.88801 0.88761 0.88673 0.92704 0.92350 0.87073 0.75259 0.95444 0.86544 0.92697 0.91353 0.90138 0.90511 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.03 37.16 0.34 -1.28 16 2 C 0.16 2.13 2.86 -67.94 -0.19 1.94 16 3 H 0.10 1.51 6.66 -51.93 -0.35 1.16 16 4 C -0.17 -1.89 5.12 -90.62 -0.46 -2.35 16 5 C -0.18 -1.99 10.18 -26.73 -0.27 -2.26 16 6 C -0.17 -1.58 9.73 -26.73 -0.26 -1.84 16 7 N -0.59 -9.24 2.76 -174.45 -0.48 -9.72 16 8 C 0.07 0.96 8.51 59.85 0.51 1.46 16 9 C 0.51 9.96 7.74 -11.59 -0.09 9.87 16 10 O -0.53 -11.28 15.82 5.49 0.09 -11.19 16 11 C 0.50 10.61 7.77 -11.59 -0.09 10.52 16 12 O -0.55 -11.91 13.13 5.50 0.07 -11.84 16 13 N -0.64 -14.36 4.67 -60.73 -0.28 -14.65 16 14 C 0.17 3.92 4.58 -4.04 -0.02 3.90 16 15 C 0.03 0.75 2.13 -155.66 -0.33 0.41 16 16 C -0.49 -12.60 8.36 -34.44 -0.29 -12.89 16 17 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 18 C 0.07 1.86 5.26 -17.82 -0.09 1.77 16 19 N -0.87 -22.81 9.65 55.43 0.53 -22.28 16 20 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.20 -4.24 9.96 -26.69 -0.27 -4.51 16 25 C -0.21 -4.43 9.93 -26.69 -0.26 -4.69 16 26 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.58 7.29 -51.93 -0.38 0.20 16 29 H 0.11 1.22 6.67 -51.93 -0.35 0.87 16 30 H 0.10 1.19 8.05 -51.93 -0.42 0.77 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.80 7.61 -51.93 -0.40 0.40 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.64 6.51 -51.93 -0.34 0.31 16 36 H 0.11 1.84 5.38 -51.93 -0.28 1.56 16 37 H 0.41 9.63 7.43 -40.82 -0.30 9.33 16 38 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 39 H 0.12 3.03 5.98 -51.92 -0.31 2.72 16 40 H 0.26 6.74 8.32 -40.82 -0.34 6.41 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 43 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -27.33 356.63 -8.37 -35.70 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -6.86 Total: 13.09 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.79 Total: 0.04 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.23 Total: -46.64 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.16 Total: -23.03 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.33 -8.37 -35.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261403454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.774 kcal (2) G-P(sol) polarization free energy of solvation -27.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds