Wall clock time and date at job start Tue Mar 31 2020 07:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46708 * 2 1 4 4 C 1.52998 * 109.47087 * 240.00616 * 2 1 3 5 5 C 1.53001 * 117.50470 * 128.61987 * 4 2 1 6 6 C 1.52998 * 117.50350 * 59.99446 * 4 2 1 7 7 N 1.46493 * 109.47482 * 120.00328 * 2 1 3 8 8 C 1.46503 * 120.00097 * 59.99681 * 7 2 1 9 9 C 1.34777 * 120.00022 * 240.00478 * 7 2 1 10 10 O 1.21355 * 119.99918 * 3.25136 * 9 7 2 11 11 C 1.49449 * 120.00107 * 183.25543 * 9 7 2 12 12 O 1.21350 * 120.00247 * 353.87803 * 11 9 7 13 13 N 1.34775 * 120.00163 * 173.59817 * 11 9 7 14 14 C 1.46498 * 120.00233 * 185.01313 * 13 11 9 15 15 C 1.53004 * 109.47264 * 184.97157 * 14 13 11 16 16 C 1.50696 * 115.55007 * 305.47011 * 15 14 13 17 17 H 1.08002 * 120.00135 * 149.46815 * 16 15 14 18 18 C 1.37885 * 120.00214 * 329.46666 * 16 15 14 19 19 N 1.31510 * 119.99771 * 4.72247 * 18 16 15 20 20 Si 1.86790 * 120.00066 * 184.72845 * 18 16 15 21 21 H 1.48497 * 109.47586 * 89.99726 * 20 18 16 22 22 H 1.48503 * 109.47154 * 210.00210 * 20 18 16 23 23 H 1.48504 * 109.47221 * 329.99717 * 20 18 16 24 24 C 1.53005 * 117.49600 * 159.79991 * 15 14 13 25 25 C 1.52997 * 117.49599 * 91.14163 * 15 14 13 26 26 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47251 * 299.99849 * 1 2 3 28 28 H 1.09007 * 109.47342 * 60.00046 * 1 2 3 29 29 H 1.09003 * 115.55083 * 274.32599 * 4 2 1 30 30 H 1.09004 * 117.49233 * 0.02562 * 5 4 2 31 31 H 1.08994 * 117.49986 * 145.01320 * 5 4 2 32 32 H 1.09004 * 117.50249 * 214.98048 * 6 4 2 33 33 H 1.09001 * 117.49549 * 0.02562 * 6 4 2 34 34 H 1.08995 * 109.47213 * 264.10349 * 8 7 2 35 35 H 1.09001 * 109.46771 * 24.10862 * 8 7 2 36 36 H 1.09000 * 109.47006 * 144.10468 * 8 7 2 37 37 H 0.97003 * 120.00185 * 5.01532 * 13 11 9 38 38 H 1.09000 * 109.47357 * 304.97781 * 14 13 11 39 39 H 1.09010 * 109.46889 * 64.97442 * 14 13 11 40 40 H 0.97000 * 120.00521 * 184.99614 * 19 18 16 41 41 H 1.08993 * 117.49957 * 0.02562 * 24 15 14 42 42 H 1.09003 * 117.49445 * 145.02353 * 24 15 14 43 43 H 1.08998 * 117.49524 * 214.97895 * 25 15 14 44 44 H 1.08997 * 117.49975 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.0740 0.0053 -2.1118 6 6 1.6356 -0.1494 -2.6096 7 7 2.0183 -0.6906 1.1960 8 6 1.6644 -2.0932 1.4279 9 6 2.7932 -0.0356 2.0833 10 8 3.0376 1.1421 1.9221 11 6 3.3513 -0.7597 3.2655 12 8 3.0186 -1.9052 3.4881 13 7 4.2285 -0.1422 4.0814 14 6 4.8594 -0.8849 5.1753 15 6 5.7081 0.0700 6.0172 16 6 6.7380 0.8657 5.2576 17 1 7.0205 1.8501 5.6005 18 6 7.3198 0.3371 4.1248 19 7 6.9100 -0.8206 3.6543 20 14 8.6899 1.2652 3.2585 21 1 10.0004 0.8534 3.8225 22 1 8.6565 0.9556 1.8065 23 1 8.5020 2.7248 3.4577 24 6 6.0616 -0.3670 7.4403 25 6 5.0348 0.7455 7.2136 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.1267 -1.8044 -1.1644 30 1 3.3914 0.9969 -1.7889 31 1 3.8415 -0.5999 -2.5942 32 1 1.4567 -0.8564 -3.4198 33 1 1.0066 0.7408 -2.6145 34 1 0.7975 -2.1451 2.0864 35 1 1.4274 -2.5701 0.4768 36 1 2.5052 -2.6080 1.8929 37 1 4.4422 0.7940 3.9443 38 1 4.0885 -1.3341 5.8015 39 1 5.4950 -1.6687 4.7631 40 1 7.3666 -1.2272 2.9012 41 1 5.6898 -1.3349 7.7765 42 1 7.0389 -0.0785 7.8272 43 1 5.3371 1.7653 7.4514 44 1 3.9872 0.5099 7.4006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261403454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:36 Heat of formation + Delta-G solvation = -20.801042 kcal Electronic energy + Delta-G solvation = -24602.471260 eV Core-core repulsion = 21135.675909 eV Total energy + Delta-G solvation = -3466.795351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78622 -39.90103 -38.70067 -38.43745 -36.39601 -34.72897 -34.10310 -31.74911 -28.53625 -27.86415 -27.49166 -25.84435 -23.87455 -23.17505 -22.94539 -21.23953 -21.04289 -20.38971 -18.96542 -18.29930 -17.90488 -17.14608 -16.92357 -16.63774 -16.28026 -15.80893 -15.53185 -15.13492 -15.06055 -14.69432 -14.35928 -14.18661 -13.76407 -13.64828 -13.40765 -13.35492 -13.26089 -12.94963 -12.90476 -12.61500 -12.34983 -12.33116 -12.28334 -12.05589 -11.84529 -11.50866 -11.36514 -10.98802 -10.94303 -10.75035 -10.30032 -10.12536 -9.89131 -9.63588 -7.99174 -6.21877 0.51805 1.38921 1.43400 1.44144 1.50858 2.30768 2.39303 2.63327 2.89745 3.03757 3.51927 3.61314 3.71148 3.91072 4.04435 4.17283 4.24056 4.30830 4.34953 4.41701 4.50725 4.69446 4.72772 4.73902 4.77457 4.81578 4.93863 4.96499 4.98505 5.01662 5.10257 5.16990 5.24203 5.27279 5.29764 5.44142 5.51936 5.58838 5.74092 5.92480 6.00738 6.33835 6.50913 6.77515 6.90349 7.21595 7.41533 8.86177 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.004799 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.417473 B = 5833.338381 C = 6871.132903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 H 0.078 0.922 4 C -0.175 4.175 5 C -0.197 4.197 6 C -0.140 4.140 7 N -0.574 5.574 8 C 0.069 3.931 9 C 0.505 3.495 10 O -0.555 6.555 11 C 0.492 3.508 12 O -0.554 6.554 13 N -0.642 5.642 14 C 0.180 3.820 15 C 0.000 4.000 16 C -0.504 4.504 17 H 0.055 0.945 18 C 0.036 3.964 19 N -0.888 5.888 20 Si 0.946 3.054 21 H -0.275 1.275 22 H -0.292 1.292 23 H -0.271 1.271 24 C -0.190 4.190 25 C -0.193 4.193 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.405 0.595 38 H 0.032 0.968 39 H 0.089 0.911 40 H 0.257 0.743 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.239 -1.662 -9.901 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 H 0.096 0.904 4 C -0.194 4.194 5 C -0.234 4.234 6 C -0.177 4.177 7 N -0.306 5.306 8 C -0.072 4.072 9 C 0.288 3.712 10 O -0.434 6.434 11 C 0.272 3.728 12 O -0.436 6.436 13 N -0.288 5.288 14 C 0.058 3.942 15 C 0.000 4.000 16 C -0.542 4.542 17 H 0.073 0.927 18 C -0.165 4.165 19 N -0.526 5.526 20 Si 0.772 3.228 21 H -0.201 1.201 22 H -0.218 1.218 23 H -0.196 1.196 24 C -0.229 4.229 25 C -0.230 4.230 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.240 0.760 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.325 -1.951 -10.010 15.998 hybrid contribution 1.348 0.817 -0.196 1.589 sum -10.977 -1.134 -10.206 15.031 Atomic orbital electron populations 1.22042 0.91823 1.03710 1.02965 1.20890 0.95888 0.96026 0.81707 0.90358 1.22593 1.05442 0.99851 0.91535 1.23063 0.93961 1.01663 1.04750 1.23033 0.96181 1.03402 0.95115 1.47828 1.47486 1.14019 1.21311 1.22351 1.02868 0.79349 1.02678 1.20376 0.79546 0.86702 0.84602 1.90685 1.59833 1.16580 1.76281 1.20058 0.81556 0.86733 0.84430 1.90554 1.61991 1.17866 1.73165 1.45510 1.39220 1.14991 1.29068 1.20932 0.92772 0.94882 0.85664 1.19313 0.96711 0.97416 0.86592 1.20742 1.22255 1.02124 1.09035 0.92656 1.25532 0.98330 0.95950 0.96694 1.70062 1.39267 1.17798 1.25433 0.85735 0.80300 0.79329 0.77414 1.20078 1.21775 1.19590 1.22979 0.99006 0.97831 1.03084 1.22973 0.96600 0.96880 1.06571 0.90577 0.93196 0.89049 0.86773 0.90226 0.88544 0.86552 0.87505 0.91689 0.88765 0.89695 0.75954 0.95002 0.89373 0.93263 0.89883 0.90192 0.90092 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.03 71.98 0.65 -2.02 16 2 C 0.16 3.91 2.86 44.99 0.13 4.04 16 3 H 0.08 2.34 6.66 -2.38 -0.02 2.32 16 4 C -0.18 -3.64 5.12 -10.79 -0.06 -3.69 16 5 C -0.20 -4.28 10.18 30.59 0.31 -3.97 16 6 C -0.14 -2.13 9.73 30.59 0.30 -1.83 16 7 N -0.57 -17.71 2.76 -824.18 -2.28 -19.99 16 8 C 0.07 1.81 8.51 127.77 1.09 2.90 16 9 C 0.50 20.06 7.74 87.27 0.68 20.73 16 10 O -0.56 -24.46 15.82 -3.26 -0.05 -24.51 16 11 C 0.49 21.44 7.77 87.27 0.68 22.12 16 12 O -0.55 -24.40 13.13 -3.25 -0.04 -24.44 16 13 N -0.64 -29.73 4.67 -464.40 -2.17 -31.91 16 14 C 0.18 8.55 4.58 86.38 0.40 8.95 16 15 C 0.00 0.02 2.13 -52.93 -0.11 -0.10 16 16 C -0.50 -25.97 8.36 25.60 0.21 -25.76 16 17 H 0.06 2.87 7.82 -2.91 -0.02 2.84 16 18 C 0.04 1.89 5.26 84.66 0.45 2.33 16 19 N -0.89 -47.48 9.65 21.45 0.21 -47.28 16 20 Si 0.95 42.56 29.54 68.60 2.03 44.59 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C -0.19 -7.92 9.96 30.62 0.30 -7.62 16 25 C -0.19 -7.81 9.93 30.62 0.30 -7.50 16 26 H 0.08 1.17 7.67 -2.38 -0.02 1.15 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.24 7.29 -2.38 -0.02 1.22 16 29 H 0.11 2.25 6.67 -2.39 -0.02 2.24 16 30 H 0.08 1.99 8.05 -2.39 -0.02 1.97 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.12 1.32 8.14 -2.38 -0.02 1.31 16 33 H 0.11 1.41 7.61 -2.39 -0.02 1.39 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.81 6.51 -2.39 -0.02 1.79 16 36 H 0.08 2.77 5.38 -2.41 -0.01 2.76 16 37 H 0.41 19.59 7.43 -92.71 -0.69 18.91 16 38 H 0.03 1.45 8.05 -2.39 -0.02 1.43 16 39 H 0.09 4.71 5.98 -2.38 -0.01 4.69 16 40 H 0.26 13.56 8.32 -92.71 -0.77 12.79 16 41 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -59.50 356.63 3.33 -56.17 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: 0.32 Total: 38.79 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 5.32 Total: 8.58 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -4.24 Total: -99.17 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.09 Total: -48.95 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -59.50 3.33 -56.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261403454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.371 kcal (2) G-P(sol) polarization free energy of solvation -59.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds