Wall clock time and date at job start Tue Mar 31 2020 07:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47515 * 2 1 4 4 C 1.46848 * 110.99689 * 66.04595 * 3 2 1 5 5 C 1.53047 * 109.62741 * 173.77949 * 4 3 2 6 6 C 1.53224 * 109.20786 * 59.61991 * 5 4 3 7 7 C 1.52530 * 109.19436 * 303.22735 * 6 5 4 8 8 C 1.53742 * 110.30761 * 178.69654 * 7 6 5 9 9 C 1.51453 * 103.35553 * 118.68628 * 8 7 6 10 10 O 1.21226 * 125.41042 * 179.97438 * 9 8 7 11 11 N 1.33957 * 109.17734 * 359.97438 * 9 8 7 12 12 C 1.46499 * 122.78302 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47065 * 270.00172 * 12 11 9 14 14 C 1.50700 * 109.47133 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99775 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00113 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00138 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99837 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47107 * 90.00199 * 18 16 14 20 20 H 1.48500 * 109.46947 * 210.00005 * 18 16 14 21 21 H 1.48496 * 109.47299 * 330.00010 * 18 16 14 22 22 C 1.34047 * 114.43340 * 0.02562 * 11 9 8 23 23 O 1.21230 * 125.50671 * 179.97438 * 22 11 9 24 24 C 1.46953 * 111.00248 * 301.89826 * 3 2 1 25 25 H 1.09002 * 109.47153 * 59.99762 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99953 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00238 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99867 * 2 1 3 30 30 H 1.08993 * 109.44767 * 293.82465 * 4 3 2 31 31 H 1.09000 * 109.44558 * 53.76690 * 4 3 2 32 32 H 1.09002 * 109.51992 * 179.54281 * 5 4 3 33 33 H 1.09006 * 109.51482 * 299.64674 * 5 4 3 34 34 H 1.09001 * 109.51972 * 63.14961 * 6 5 4 35 35 H 1.09006 * 109.52016 * 183.26055 * 6 5 4 36 36 H 1.08999 * 110.64238 * 237.15353 * 8 7 6 37 37 H 1.09005 * 110.64174 * 0.21957 * 8 7 6 38 38 H 1.08993 * 109.47447 * 30.00584 * 12 11 9 39 39 H 1.08999 * 109.46842 * 150.00603 * 12 11 9 40 40 H 1.09001 * 109.47144 * 300.00208 * 13 12 11 41 41 H 1.09004 * 109.47000 * 60.00022 * 13 12 11 42 42 H 0.96996 * 120.00409 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.44848 * 304.87593 * 24 3 2 44 44 H 1.09000 * 109.45460 * 64.79944 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6704 2.0665 1.2529 5 6 2.3253 3.4494 1.2857 6 6 1.8289 4.2707 0.0911 7 6 2.1333 3.5147 -1.1983 8 6 1.6161 4.3022 -2.4132 9 6 2.8736 4.5828 -3.2094 10 8 2.9203 5.1892 -4.2580 11 7 3.9259 4.0545 -2.5706 12 6 5.2951 4.1518 -3.0824 13 6 5.5897 2.9502 -3.9825 14 6 6.9984 3.0499 -4.5085 15 1 7.6215 3.8865 -4.2283 16 6 7.4919 2.0732 -5.3473 17 7 8.7214 2.1600 -5.8059 18 14 6.4141 0.6268 -5.8324 19 1 5.6643 0.9612 -7.0698 20 1 7.2656 -0.5651 -6.0765 21 1 5.4555 0.3343 -4.7366 22 6 3.6220 3.4285 -1.4249 23 8 4.4154 2.8812 -0.6897 24 6 1.5119 2.1231 -1.1647 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 0.5879 2.1762 1.3167 31 1 2.0259 1.4771 2.0980 32 1 2.0582 3.9570 2.2126 33 1 3.4084 3.3408 1.2291 34 1 0.7534 4.4256 0.1773 35 1 2.3358 5.2356 0.0767 36 1 0.9199 3.6978 -2.9948 37 1 1.1462 5.2332 -2.0961 38 1 5.4038 5.0715 -3.6570 39 1 5.9954 4.1603 -2.2471 40 1 5.4811 2.0304 -3.4078 41 1 4.8894 2.9416 -4.8178 42 1 9.0685 1.4731 -6.3963 43 1 1.7735 1.5866 -2.0768 44 1 0.4277 2.2112 -1.0942 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272436848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:00 Heat of formation + Delta-G solvation = -65.132719 kcal Electronic energy + Delta-G solvation = -25251.273389 eV Core-core repulsion = 21782.555672 eV Total energy + Delta-G solvation = -3468.717717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.05745 -39.21337 -37.94033 -35.62202 -35.16928 -33.39333 -32.35465 -30.39568 -29.77980 -27.78749 -25.43867 -25.19156 -24.04187 -22.46334 -21.55819 -21.19171 -20.15181 -18.38392 -17.24827 -16.46180 -16.29354 -16.14203 -15.66042 -15.15641 -15.00471 -14.65686 -14.41988 -14.19923 -13.83439 -13.65957 -13.51461 -13.24508 -13.17380 -12.70494 -12.62935 -12.57869 -12.45552 -12.04102 -11.85592 -11.72622 -11.37289 -11.04304 -10.94948 -10.89956 -10.69234 -10.62280 -10.22653 -10.01521 -9.79941 -9.49902 -9.27559 -9.01061 -8.54861 -8.35778 -6.05716 -4.04863 1.82884 2.91643 3.05469 3.31918 3.38373 3.43079 3.62018 4.10720 4.25419 4.34236 4.41570 4.45207 4.75577 4.82854 4.86946 4.96837 4.99626 5.11907 5.17942 5.26425 5.28436 5.29900 5.37351 5.47287 5.52623 5.61293 5.63780 5.69618 5.76921 5.88263 5.90291 5.94438 5.95175 6.17635 6.26358 6.51236 6.87884 6.95873 7.09116 7.17160 7.43657 7.68011 7.71590 8.19347 8.47657 8.96408 9.55668 11.07319 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.005104 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.708763 B = 5484.677536 C = 6170.577830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 N -0.526 5.526 4 C 0.059 3.941 5 C -0.127 4.127 6 C -0.098 4.098 7 C -0.095 4.095 8 C -0.152 4.152 9 C 0.523 3.477 10 O -0.484 6.484 11 N -0.572 5.572 12 C 0.111 3.889 13 C -0.021 4.021 14 C -0.520 4.520 15 H 0.076 0.924 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.266 1.266 22 C 0.537 3.463 23 O -0.448 6.448 24 C 0.075 3.925 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.022 0.978 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.081 0.919 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.170 0.531 14.862 25.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.077 4.077 3 N -0.249 5.249 4 C -0.069 4.069 5 C -0.165 4.165 6 C -0.136 4.136 7 C -0.099 4.099 8 C -0.192 4.192 9 C 0.311 3.689 10 O -0.356 6.356 11 N -0.315 5.315 12 C -0.008 4.008 13 C -0.059 4.059 14 C -0.558 4.558 15 H 0.094 0.906 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.191 1.191 22 C 0.323 3.677 23 O -0.316 6.316 24 C -0.053 4.053 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.040 0.960 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.986 0.447 14.560 24.732 hybrid contribution -1.304 -0.833 -0.455 1.613 sum -21.291 -0.386 14.105 25.542 Atomic orbital electron populations 1.22464 0.98405 1.02408 1.01912 1.22164 0.92530 0.89672 1.03315 1.62058 1.59262 1.01791 1.01811 1.22053 0.97320 0.95371 0.92120 1.21744 1.03432 0.94310 0.97017 1.21441 1.01707 0.98275 0.92144 1.21167 0.94188 0.97581 0.96997 1.22587 0.97484 1.03226 0.95939 1.20670 0.86184 0.77384 0.84631 1.90766 1.86098 1.38129 1.20596 1.47118 1.11543 1.49830 1.23000 1.21991 0.77560 1.02138 0.99131 1.19845 0.98227 0.93339 0.94515 1.20878 0.96074 1.09932 1.28921 0.90635 1.24935 0.94856 0.97803 0.95381 1.69894 1.15272 1.34983 1.33623 0.86796 0.80874 0.82483 0.79321 1.20188 1.21157 1.19097 1.20164 0.90443 0.76996 0.80071 1.90726 1.55208 1.38493 1.47180 1.21895 0.96932 0.91405 0.95073 0.92420 0.92550 0.92064 0.90426 0.90466 0.94920 0.90663 0.91249 0.89109 0.90613 0.91022 0.86562 0.86367 0.89607 0.89498 0.95966 0.96637 0.92597 0.90106 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.43 9.21 37.16 0.34 -1.08 16 2 C 0.05 0.49 6.08 -3.83 -0.02 0.46 16 3 N -0.53 -5.93 4.22 -234.96 -0.99 -6.92 16 4 C 0.06 0.55 5.02 -3.83 -0.02 0.53 16 5 C -0.13 -1.22 5.81 -26.59 -0.15 -1.38 16 6 C -0.10 -0.87 4.60 -26.86 -0.12 -0.99 16 7 C -0.10 -1.07 0.69 -155.74 -0.11 -1.18 16 8 C -0.15 -1.56 6.30 -27.13 -0.17 -1.73 16 9 C 0.52 8.39 8.09 -10.98 -0.09 8.30 16 10 O -0.48 -9.41 17.48 5.60 0.10 -9.32 16 11 N -0.57 -10.16 2.56 -115.42 -0.30 -10.46 16 12 C 0.11 2.35 5.50 -4.04 -0.02 2.33 16 13 C -0.02 -0.53 4.36 -27.88 -0.12 -0.66 16 14 C -0.52 -15.23 9.66 -34.44 -0.33 -15.57 16 15 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 16 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 18 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 22 C 0.54 8.71 6.52 -11.25 -0.07 8.64 16 23 O -0.45 -8.58 15.02 5.60 0.08 -8.50 16 24 C 0.08 0.79 3.40 -4.08 -0.01 0.78 16 25 H 0.06 0.43 6.48 -51.93 -0.34 0.09 16 26 H 0.06 0.39 6.69 -51.93 -0.35 0.05 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.26 6.77 -51.93 -0.35 -0.10 16 31 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.16 6.26 -51.93 -0.33 0.84 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.12 0.97 7.72 -51.93 -0.40 0.57 16 37 H 0.12 0.89 7.72 -51.93 -0.40 0.49 16 38 H 0.09 1.82 7.83 -51.93 -0.41 1.41 16 39 H 0.09 1.84 7.84 -51.93 -0.41 1.43 16 40 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 41 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.08 0.95 8.13 -51.93 -0.42 0.52 16 44 H 0.05 0.43 6.55 -51.93 -0.34 0.09 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -34.63 342.05 -7.89 -42.52 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -7.04 Total: -3.43 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.01 Total: 0.51 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.51 Total: -44.80 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.18 Total: -17.81 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.63 -7.89 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272436848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.609 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds