Wall clock time and date at job start Tue Mar 31 2020 07:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47515 * 2 1 4 4 C 1.46848 * 110.99689 * 66.04595 * 3 2 1 5 5 C 1.53047 * 109.62741 * 173.77949 * 4 3 2 6 6 C 1.53224 * 109.20786 * 59.61991 * 5 4 3 7 7 C 1.52530 * 109.19436 * 303.22735 * 6 5 4 8 8 C 1.53742 * 110.30761 * 178.69654 * 7 6 5 9 9 C 1.51453 * 103.35553 * 118.68628 * 8 7 6 10 10 O 1.21226 * 125.41042 * 179.97438 * 9 8 7 11 11 N 1.33957 * 109.17734 * 359.97438 * 9 8 7 12 12 C 1.46499 * 122.78302 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47065 * 270.00172 * 12 11 9 14 14 C 1.50700 * 109.47133 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99775 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00113 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00138 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99837 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47107 * 90.00199 * 18 16 14 20 20 H 1.48500 * 109.46947 * 210.00005 * 18 16 14 21 21 H 1.48496 * 109.47299 * 330.00010 * 18 16 14 22 22 C 1.34047 * 114.43340 * 0.02562 * 11 9 8 23 23 O 1.21230 * 125.50671 * 179.97438 * 22 11 9 24 24 C 1.46953 * 111.00248 * 301.89826 * 3 2 1 25 25 H 1.09002 * 109.47153 * 59.99762 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99953 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00238 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99867 * 2 1 3 30 30 H 1.08993 * 109.44767 * 293.82465 * 4 3 2 31 31 H 1.09000 * 109.44558 * 53.76690 * 4 3 2 32 32 H 1.09002 * 109.51992 * 179.54281 * 5 4 3 33 33 H 1.09006 * 109.51482 * 299.64674 * 5 4 3 34 34 H 1.09001 * 109.51972 * 63.14961 * 6 5 4 35 35 H 1.09006 * 109.52016 * 183.26055 * 6 5 4 36 36 H 1.08999 * 110.64238 * 237.15353 * 8 7 6 37 37 H 1.09005 * 110.64174 * 0.21957 * 8 7 6 38 38 H 1.08993 * 109.47447 * 30.00584 * 12 11 9 39 39 H 1.08999 * 109.46842 * 150.00603 * 12 11 9 40 40 H 1.09001 * 109.47144 * 300.00208 * 13 12 11 41 41 H 1.09004 * 109.47000 * 60.00022 * 13 12 11 42 42 H 0.96996 * 120.00409 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.44848 * 304.87593 * 24 3 2 44 44 H 1.09000 * 109.45460 * 64.79944 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6704 2.0665 1.2529 5 6 2.3253 3.4494 1.2857 6 6 1.8289 4.2707 0.0911 7 6 2.1333 3.5147 -1.1983 8 6 1.6161 4.3022 -2.4132 9 6 2.8736 4.5828 -3.2094 10 8 2.9203 5.1892 -4.2580 11 7 3.9259 4.0545 -2.5706 12 6 5.2951 4.1518 -3.0824 13 6 5.5897 2.9502 -3.9825 14 6 6.9984 3.0499 -4.5085 15 1 7.6215 3.8865 -4.2283 16 6 7.4919 2.0732 -5.3473 17 7 8.7214 2.1600 -5.8059 18 14 6.4141 0.6268 -5.8324 19 1 5.6643 0.9612 -7.0698 20 1 7.2656 -0.5651 -6.0765 21 1 5.4555 0.3343 -4.7366 22 6 3.6220 3.4285 -1.4249 23 8 4.4154 2.8812 -0.6897 24 6 1.5119 2.1231 -1.1647 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 0.5879 2.1762 1.3167 31 1 2.0259 1.4771 2.0980 32 1 2.0582 3.9570 2.2126 33 1 3.4084 3.3408 1.2291 34 1 0.7534 4.4256 0.1773 35 1 2.3358 5.2356 0.0767 36 1 0.9199 3.6978 -2.9948 37 1 1.1462 5.2332 -2.0961 38 1 5.4038 5.0715 -3.6570 39 1 5.9954 4.1603 -2.2471 40 1 5.4811 2.0304 -3.4078 41 1 4.8894 2.9416 -4.8178 42 1 9.0685 1.4731 -6.3963 43 1 1.7735 1.5866 -2.0768 44 1 0.4277 2.2112 -1.0942 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272436848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:00 Heat of formation + Delta-G solvation = -89.654965 kcal Electronic energy + Delta-G solvation = -25252.336753 eV Core-core repulsion = 21782.555672 eV Total energy + Delta-G solvation = -3469.781081 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.22586 -40.21389 -39.16088 -36.96923 -36.40128 -35.11357 -33.68075 -32.06853 -30.47440 -28.83524 -27.17563 -25.86170 -25.25780 -23.40537 -23.13077 -22.25359 -21.36177 -19.53906 -19.17659 -17.84433 -17.53868 -17.40160 -16.57085 -16.42510 -16.05070 -15.81352 -15.62348 -15.38314 -15.14460 -14.94260 -14.84719 -14.63299 -14.33095 -14.02943 -13.69286 -13.51624 -13.33350 -13.17209 -13.03922 -12.70386 -12.66972 -12.58984 -12.17539 -12.14877 -11.90617 -11.74130 -11.58020 -11.56312 -11.34694 -11.13845 -10.87347 -10.72998 -10.60984 -9.05034 -8.39273 -6.44996 0.58727 1.26080 1.28341 1.39830 1.61038 1.82987 2.26843 2.84481 2.94863 3.16272 3.26012 3.49417 3.61709 3.96958 4.09233 4.12952 4.20475 4.26526 4.29764 4.36689 4.40937 4.46861 4.55150 4.58990 4.60239 4.60692 4.72748 4.78344 4.84627 4.92048 5.01897 5.08253 5.11148 5.12753 5.14739 5.25387 5.33937 5.47993 5.51750 5.98256 6.12160 6.19136 6.28241 6.45424 6.59493 6.88067 7.19613 8.77085 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.005104 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.708763 B = 5484.677536 C = 6170.577830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 N -0.559 5.559 4 C 0.062 3.938 5 C -0.128 4.128 6 C -0.095 4.095 7 C -0.082 4.082 8 C -0.130 4.130 9 C 0.516 3.484 10 O -0.525 6.525 11 N -0.584 5.584 12 C 0.121 3.879 13 C -0.008 4.008 14 C -0.536 4.536 15 H 0.042 0.958 16 C 0.015 3.985 17 N -0.941 5.941 18 Si 0.946 3.054 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.259 1.259 22 C 0.527 3.473 23 O -0.487 6.487 24 C 0.075 3.925 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.160 0.840 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.013 0.987 41 H 0.013 0.987 42 H 0.270 0.730 43 H 0.063 0.937 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.659 0.132 15.840 30.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.077 4.077 3 N -0.283 5.283 4 C -0.066 4.066 5 C -0.166 4.166 6 C -0.133 4.133 7 C -0.086 4.086 8 C -0.169 4.169 9 C 0.307 3.693 10 O -0.400 6.400 11 N -0.326 5.326 12 C -0.001 4.001 13 C -0.046 4.046 14 C -0.574 4.574 15 H 0.060 0.940 16 C -0.184 4.184 17 N -0.581 5.581 18 Si 0.769 3.231 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.183 1.183 22 C 0.317 3.683 23 O -0.357 6.357 24 C -0.053 4.053 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.165 0.835 37 H 0.177 0.823 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.506 0.053 15.561 29.030 hybrid contribution 0.230 -0.667 -0.710 1.001 sum -24.276 -0.613 14.851 28.465 Atomic orbital electron populations 1.22363 0.96244 1.03062 1.02508 1.22124 0.94288 0.88866 1.02411 1.62001 1.60803 1.02690 1.02849 1.22062 0.98689 0.94736 0.91082 1.21733 1.00943 0.95250 0.98683 1.21551 1.04266 0.97483 0.89966 1.21256 0.89479 0.99001 0.98881 1.22733 0.94499 1.05398 0.94305 1.21748 0.87466 0.75825 0.84234 1.90746 1.86807 1.39853 1.22567 1.47310 1.10415 1.50821 1.24051 1.21482 0.80486 1.00017 0.98094 1.19626 0.95640 0.94602 0.94729 1.21177 0.97827 1.09128 1.29295 0.94014 1.25877 0.96297 1.00948 0.95247 1.70023 1.17152 1.36398 1.34481 0.85728 0.79184 0.78767 0.79444 1.18777 1.19870 1.18293 1.21228 0.92888 0.75472 0.78722 1.90708 1.56982 1.39950 1.48101 1.21947 0.98832 0.90310 0.94240 0.91935 0.91581 0.91516 0.90657 0.92186 0.92276 0.91158 0.88950 0.93234 0.86319 0.90961 0.83480 0.82252 0.90253 0.90474 0.96904 0.96848 0.92084 0.91824 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.21 71.98 0.66 -1.40 16 2 C 0.05 0.88 6.08 86.30 0.53 1.40 16 3 N -0.56 -11.47 4.22 -897.29 -3.79 -15.26 16 4 C 0.06 0.96 5.02 86.33 0.43 1.39 16 5 C -0.13 -2.14 5.81 30.69 0.18 -1.96 16 6 C -0.10 -1.28 4.60 30.51 0.14 -1.14 16 7 C -0.08 -1.58 0.69 -52.98 -0.04 -1.62 16 8 C -0.13 -2.08 6.30 30.34 0.19 -1.89 16 9 C 0.52 15.77 8.09 88.02 0.71 16.49 16 10 O -0.52 -20.11 17.48 -2.86 -0.05 -20.16 16 11 N -0.58 -20.77 2.56 -756.76 -1.94 -22.71 16 12 C 0.12 5.35 5.50 86.38 0.47 5.83 16 13 C -0.01 -0.41 4.36 29.85 0.13 -0.28 16 14 C -0.54 -32.83 9.66 25.60 0.25 -32.58 16 15 H 0.04 2.75 7.99 -2.91 -0.02 2.73 16 16 C 0.01 0.89 5.47 84.66 0.46 1.35 16 17 N -0.94 -60.66 13.96 21.45 0.30 -60.36 16 18 Si 0.95 46.89 27.47 68.60 1.88 48.77 16 19 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.26 -12.41 6.54 99.48 0.65 -11.75 16 22 C 0.53 16.92 6.52 87.81 0.57 17.50 16 23 O -0.49 -19.25 15.02 -2.88 -0.04 -19.30 16 24 C 0.07 1.32 3.40 86.11 0.29 1.61 16 25 H 0.06 0.65 6.48 -2.39 -0.02 0.64 16 26 H 0.07 0.63 6.69 -2.39 -0.02 0.62 16 27 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.07 1.28 8.06 -2.39 -0.02 1.26 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 0.62 6.77 -2.39 -0.02 0.61 16 31 H 0.07 1.14 8.06 -2.39 -0.02 1.12 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.26 6.26 -2.38 -0.01 1.24 16 34 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.15 1.61 7.72 -2.39 -0.02 1.59 16 37 H 0.16 1.38 7.72 -2.38 -0.02 1.36 16 38 H 0.08 3.56 7.83 -2.39 -0.02 3.54 16 39 H 0.08 3.50 7.84 -2.39 -0.02 3.48 16 40 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 41 H 0.01 0.69 7.57 -2.38 -0.02 0.67 16 42 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 43 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 44 H 0.09 0.94 6.55 -2.39 -0.02 0.93 16 Total: -1.00 -80.65 342.05 2.28 -78.37 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.93 Total: 5.95 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 4.99 Total: 4.70 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -5.43 Total: -98.33 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.09 Total: -39.46 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.88 Total: 48.77 kcal Total: -80.65 2.28 -78.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272436848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.282 kcal (2) G-P(sol) polarization free energy of solvation -80.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds