Wall clock time and date at job start Tue Mar 31 2020 07:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46897 * 109.47439 * 2 1 4 4 C 1.48190 * 111.00193 * 169.99851 * 3 2 1 5 5 C 1.52710 * 85.79465 * 223.21307 * 4 3 2 6 6 C 1.48193 * 111.00379 * 70.38753 * 3 2 1 7 7 C 1.53815 * 115.65173 * 140.48836 * 5 4 3 8 8 C 1.55018 * 101.90196 * 94.47076 * 7 5 4 9 9 C 1.54178 * 104.27474 * 19.70818 * 8 7 5 10 10 H 1.08994 * 109.85889 * 242.16828 * 9 8 7 11 11 C 1.50699 * 109.85389 * 121.22273 * 9 8 7 12 12 O 1.21275 * 120.00520 * 245.24874 * 11 9 8 13 13 N 1.34784 * 119.99609 * 65.24999 * 11 9 8 14 14 C 1.47066 * 136.05409 * 179.97438 * 13 11 9 15 15 C 1.53504 * 88.04678 * 152.81416 * 14 13 11 16 16 C 1.50697 * 114.20578 * 139.68331 * 15 14 13 17 17 H 1.08005 * 119.99898 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00143 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99546 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00178 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46884 * 89.99971 * 20 18 16 22 22 H 1.48501 * 109.47094 * 209.99927 * 20 18 16 23 23 H 1.48502 * 109.46869 * 329.99890 * 20 18 16 24 24 C 1.47063 * 136.05782 * 359.94750 * 13 11 9 25 25 O 1.43171 * 116.23126 * 264.77110 * 5 4 3 26 26 H 1.09001 * 109.47441 * 300.00498 * 1 2 3 27 27 H 1.09004 * 109.47231 * 60.00050 * 1 2 3 28 28 H 1.09000 * 109.47698 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47441 * 239.99502 * 2 1 3 30 30 H 1.09004 * 109.47231 * 119.99950 * 2 1 3 31 31 H 1.09001 * 113.82460 * 108.99602 * 4 3 2 32 32 H 1.08999 * 113.82270 * 337.43302 * 4 3 2 33 33 H 1.09007 * 113.81755 * 22.57130 * 6 3 2 34 34 H 1.08999 * 113.82328 * 251.01018 * 6 3 2 35 35 H 1.09003 * 110.94199 * 336.32229 * 7 5 4 36 36 H 1.08999 * 110.97850 * 212.63832 * 7 5 4 37 37 H 1.09006 * 110.47337 * 261.01487 * 8 7 5 38 38 H 1.08997 * 110.58640 * 138.45945 * 8 7 5 39 39 H 1.09002 * 113.46793 * 267.62388 * 14 13 11 40 40 H 1.08999 * 113.46805 * 38.00755 * 14 13 11 41 41 H 1.08999 * 114.20382 * 272.51056 * 15 14 13 42 42 H 0.97005 * 119.99959 * 180.02562 * 19 18 16 43 43 H 1.08994 * 113.46736 * 321.93839 * 24 13 11 44 44 H 1.09003 * 113.46602 * 92.31798 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4812 1.4314 0.2403 5 6 3.1761 2.5959 1.1800 6 6 1.7589 2.0405 1.3032 7 6 3.9930 2.6317 2.4828 8 6 5.1658 3.5700 2.0991 9 6 4.6473 4.3437 0.8704 10 1 5.2724 4.1254 0.0046 11 6 4.6638 5.8238 1.1533 12 8 3.6222 6.4429 1.2052 13 7 5.8361 6.4595 1.3485 14 6 6.2575 7.8386 1.6373 15 6 7.5036 7.2589 2.3211 16 6 8.7723 8.0236 2.0446 17 1 8.7486 8.8980 1.4112 18 6 9.9636 7.6063 2.5993 19 7 9.9926 6.5406 3.3694 20 14 11.5362 8.5546 2.2571 21 1 11.7122 9.6093 3.2875 22 1 12.6935 7.6250 2.2975 23 1 11.4528 9.1832 0.9143 24 6 7.2566 6.0794 1.3670 25 8 3.2975 3.9085 0.6213 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.0629 1.7145 -0.6370 32 1 3.8726 0.5486 0.7458 33 1 1.6304 1.3415 2.1297 34 1 0.9819 2.8040 1.2643 35 1 4.3579 1.6377 2.7414 36 1 3.4072 3.0542 3.2992 37 1 6.0498 2.9881 1.8379 38 1 5.3900 4.2568 2.9152 39 1 6.4837 8.4196 0.7432 40 1 5.5904 8.3620 2.3223 41 1 7.3638 7.0182 3.3750 42 1 10.8307 6.2471 3.7600 43 1 7.4397 5.1064 1.8228 44 1 7.7485 6.1912 0.4007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278169626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:50 Heat of formation + Delta-G solvation = -2.992212 kcal Electronic energy + Delta-G solvation = -24126.560796 eV Core-core repulsion = 20660.537693 eV Total energy + Delta-G solvation = -3466.023102 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16012 -39.49885 -37.84004 -36.56531 -32.78146 -32.63762 -32.18153 -29.75997 -28.14831 -26.49438 -25.54023 -25.01141 -24.50679 -22.51192 -21.19029 -20.46907 -19.63555 -18.29398 -17.10365 -16.54543 -16.43326 -16.17770 -15.64221 -15.36196 -14.94188 -14.76965 -14.57752 -14.14880 -13.65910 -13.41583 -13.23043 -12.96920 -12.51091 -12.43262 -12.30828 -12.20426 -11.80598 -11.62924 -11.55446 -11.45479 -11.30875 -11.16349 -10.97990 -10.86562 -10.77537 -10.68127 -10.37175 -9.92701 -9.49188 -9.23142 -8.98217 -8.87786 -8.61534 -7.88939 -6.22544 -4.27763 3.00038 3.19350 3.21913 3.29310 3.32488 3.59925 3.97935 4.24799 4.30250 4.38526 4.58961 4.68464 4.85037 4.89504 4.93212 5.06884 5.09415 5.10985 5.21486 5.29175 5.40259 5.51033 5.53551 5.58839 5.63300 5.67832 5.76780 5.85864 5.95072 5.98476 6.04835 6.13657 6.14712 6.23845 6.41936 6.51437 6.59366 6.73795 6.79039 6.96303 7.51062 7.75544 8.14244 8.48239 8.74671 8.76637 9.39251 10.87214 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035426 B = 0.003036 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.187745 B = 9220.991652 C = 9639.696194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.014 3.986 3 N -0.472 5.472 4 C -0.011 4.011 5 C 0.078 3.922 6 C 0.018 3.982 7 C -0.140 4.140 8 C -0.141 4.141 9 C 0.068 3.932 10 H 0.092 0.908 11 C 0.532 3.468 12 O -0.546 6.546 13 N -0.643 5.643 14 C 0.102 3.898 15 C 0.036 3.964 16 C -0.517 4.517 17 H 0.064 0.936 18 C 0.068 3.932 19 N -0.886 5.886 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.095 3.905 25 O -0.310 6.310 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.264 0.736 43 H 0.060 0.940 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 -14.126 -2.843 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 N -0.195 5.195 4 C -0.140 4.140 5 C 0.037 3.963 6 C -0.110 4.110 7 C -0.178 4.178 8 C -0.179 4.179 9 C 0.007 3.993 10 H 0.109 0.891 11 C 0.320 3.680 12 O -0.424 6.424 13 N -0.379 5.379 14 C -0.020 4.020 15 C 0.017 3.983 16 C -0.555 4.555 17 H 0.082 0.918 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.723 3.277 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.027 4.027 25 O -0.227 6.227 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.733 -13.661 -3.477 18.340 hybrid contribution 1.450 -0.251 0.495 1.552 sum -10.283 -13.912 -2.982 17.555 Atomic orbital electron populations 1.21728 0.94616 1.01530 1.02699 1.22629 0.96787 0.90940 1.01078 1.68684 1.06244 1.14414 1.30116 1.24380 0.91600 0.97739 1.00297 1.23062 0.96302 0.84969 0.92014 1.23933 0.96984 0.98255 0.91856 1.22955 0.96705 1.00540 0.97560 1.22899 0.98729 0.98578 0.97697 1.22608 0.85171 0.92746 0.98824 0.89073 1.19832 0.82593 0.88314 0.77243 1.90657 1.31586 1.68025 1.52099 1.49937 1.05965 1.13279 1.68677 1.23349 0.95978 0.83516 0.99149 1.20368 0.91427 0.91288 0.95210 1.20912 0.91379 1.12401 1.30781 0.91794 1.25022 0.99303 0.94887 0.94291 1.69945 1.27073 1.23676 1.31617 0.86533 0.82486 0.79744 0.78926 1.20470 1.21148 1.19679 1.23707 0.76072 1.01794 1.01125 1.88883 1.27701 1.28255 1.77909 0.92675 0.91761 0.92335 0.90587 0.94296 0.88579 0.90261 0.89909 0.88172 0.89778 0.89788 0.89469 0.89351 0.90826 0.92439 0.91344 0.92635 0.92105 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.97 37.15 0.37 -0.79 16 2 C 0.01 0.12 5.53 -3.83 -0.02 0.10 16 3 N -0.47 -5.35 6.26 -244.98 -1.53 -6.88 16 4 C -0.01 -0.12 7.53 -3.26 -0.02 -0.14 16 5 C 0.08 0.98 1.27 -90.64 -0.12 0.86 16 6 C 0.02 0.20 6.67 -3.26 -0.02 0.18 16 7 C -0.14 -1.58 6.49 -25.24 -0.16 -1.74 16 8 C -0.14 -1.91 5.85 -25.05 -0.15 -2.06 16 9 C 0.07 1.10 3.70 -27.27 -0.10 1.00 16 10 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 11 C 0.53 10.87 7.20 -10.98 -0.08 10.79 16 12 O -0.55 -13.15 17.30 -13.99 -0.24 -13.39 16 13 N -0.64 -13.03 3.67 -184.95 -0.68 -13.71 16 14 C 0.10 2.12 8.17 -8.50 -0.07 2.05 16 15 C 0.04 0.83 3.79 -91.15 -0.35 0.48 16 16 C -0.52 -12.85 8.83 -34.44 -0.30 -13.15 16 17 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 18 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -23.44 13.26 55.43 0.74 -22.70 16 20 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 C 0.10 1.93 7.82 -8.39 -0.07 1.86 16 25 O -0.31 -5.30 10.56 -54.79 -0.58 -5.88 16 26 H 0.05 0.43 7.54 -51.93 -0.39 0.04 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.30 7.71 -51.93 -0.40 -0.10 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.67 7.66 -51.93 -0.40 0.27 16 33 H 0.08 0.71 7.79 -51.93 -0.40 0.31 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.08 0.74 7.95 -51.93 -0.41 0.32 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.35 7.69 -51.93 -0.40 0.96 16 39 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.70 8.11 -51.93 -0.42 1.28 16 42 H 0.26 6.66 8.31 -40.82 -0.34 6.33 16 43 H 0.06 1.18 7.54 -51.93 -0.39 0.79 16 44 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -29.98 357.78 -10.52 -40.50 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.41 Total: 0.92 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.18 Total: 1.08 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -1.48 Total: -43.30 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.82 Total: -19.26 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.98 -10.52 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278169626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.510 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds