Wall clock time and date at job start Tue Mar 31 2020 07:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46897 * 109.47439 * 2 1 4 4 C 1.48190 * 111.00193 * 169.99851 * 3 2 1 5 5 C 1.52710 * 85.79465 * 223.21307 * 4 3 2 6 6 C 1.48193 * 111.00379 * 70.38753 * 3 2 1 7 7 C 1.53815 * 115.65173 * 140.48836 * 5 4 3 8 8 C 1.55018 * 101.90196 * 94.47076 * 7 5 4 9 9 C 1.54178 * 104.27474 * 19.70818 * 8 7 5 10 10 H 1.08994 * 109.85889 * 242.16828 * 9 8 7 11 11 C 1.50699 * 109.85389 * 121.22273 * 9 8 7 12 12 O 1.21275 * 120.00520 * 245.24874 * 11 9 8 13 13 N 1.34784 * 119.99609 * 65.24999 * 11 9 8 14 14 C 1.47066 * 136.05409 * 179.97438 * 13 11 9 15 15 C 1.53504 * 88.04678 * 152.81416 * 14 13 11 16 16 C 1.50697 * 114.20578 * 139.68331 * 15 14 13 17 17 H 1.08005 * 119.99898 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00143 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99546 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00178 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46884 * 89.99971 * 20 18 16 22 22 H 1.48501 * 109.47094 * 209.99927 * 20 18 16 23 23 H 1.48502 * 109.46869 * 329.99890 * 20 18 16 24 24 C 1.47063 * 136.05782 * 359.94750 * 13 11 9 25 25 O 1.43171 * 116.23126 * 264.77110 * 5 4 3 26 26 H 1.09001 * 109.47441 * 300.00498 * 1 2 3 27 27 H 1.09004 * 109.47231 * 60.00050 * 1 2 3 28 28 H 1.09000 * 109.47698 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47441 * 239.99502 * 2 1 3 30 30 H 1.09004 * 109.47231 * 119.99950 * 2 1 3 31 31 H 1.09001 * 113.82460 * 108.99602 * 4 3 2 32 32 H 1.08999 * 113.82270 * 337.43302 * 4 3 2 33 33 H 1.09007 * 113.81755 * 22.57130 * 6 3 2 34 34 H 1.08999 * 113.82328 * 251.01018 * 6 3 2 35 35 H 1.09003 * 110.94199 * 336.32229 * 7 5 4 36 36 H 1.08999 * 110.97850 * 212.63832 * 7 5 4 37 37 H 1.09006 * 110.47337 * 261.01487 * 8 7 5 38 38 H 1.08997 * 110.58640 * 138.45945 * 8 7 5 39 39 H 1.09002 * 113.46793 * 267.62388 * 14 13 11 40 40 H 1.08999 * 113.46805 * 38.00755 * 14 13 11 41 41 H 1.08999 * 114.20382 * 272.51056 * 15 14 13 42 42 H 0.97005 * 119.99959 * 180.02562 * 19 18 16 43 43 H 1.08994 * 113.46736 * 321.93839 * 24 13 11 44 44 H 1.09003 * 113.46602 * 92.31798 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4812 1.4314 0.2403 5 6 3.1761 2.5959 1.1800 6 6 1.7589 2.0405 1.3032 7 6 3.9930 2.6317 2.4828 8 6 5.1658 3.5700 2.0991 9 6 4.6473 4.3437 0.8704 10 1 5.2724 4.1254 0.0046 11 6 4.6638 5.8238 1.1533 12 8 3.6222 6.4429 1.2052 13 7 5.8361 6.4595 1.3485 14 6 6.2575 7.8386 1.6373 15 6 7.5036 7.2589 2.3211 16 6 8.7723 8.0236 2.0446 17 1 8.7486 8.8980 1.4112 18 6 9.9636 7.6063 2.5993 19 7 9.9926 6.5406 3.3694 20 14 11.5362 8.5546 2.2571 21 1 11.7122 9.6093 3.2875 22 1 12.6935 7.6250 2.2975 23 1 11.4528 9.1832 0.9143 24 6 7.2566 6.0794 1.3670 25 8 3.2975 3.9085 0.6213 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.0629 1.7145 -0.6370 32 1 3.8726 0.5486 0.7458 33 1 1.6304 1.3415 2.1297 34 1 0.9819 2.8040 1.2643 35 1 4.3579 1.6377 2.7414 36 1 3.4072 3.0542 3.2992 37 1 6.0498 2.9881 1.8379 38 1 5.3900 4.2568 2.9152 39 1 6.4837 8.4196 0.7432 40 1 5.5904 8.3620 2.3223 41 1 7.3638 7.0182 3.3750 42 1 10.8307 6.2471 3.7600 43 1 7.4397 5.1064 1.8228 44 1 7.7485 6.1912 0.4007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278169626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:49 Heat of formation + Delta-G solvation = -22.975312 kcal Electronic energy + Delta-G solvation = -24127.427328 eV Core-core repulsion = 20660.537693 eV Total energy + Delta-G solvation = -3466.889634 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.17871 -41.02790 -39.16972 -38.04718 -34.66266 -33.50639 -33.25390 -31.24895 -29.39870 -27.48283 -26.91497 -26.65199 -25.73678 -23.60768 -22.15152 -21.97163 -20.58170 -19.87520 -18.84274 -18.02137 -17.54678 -17.36108 -16.98929 -16.53703 -16.33748 -15.95338 -15.74692 -15.50306 -14.94015 -14.66490 -14.40604 -14.15370 -13.82922 -13.70381 -13.31922 -13.28254 -13.17661 -13.02182 -12.81188 -12.73939 -12.65887 -12.53981 -12.28373 -12.16688 -11.93285 -11.79407 -11.56310 -11.36000 -11.04930 -10.96938 -10.57363 -10.40270 -9.73155 -9.60059 -8.15654 -6.25994 1.48298 1.48902 1.51175 1.59741 1.73794 2.46584 2.57743 3.01804 3.14522 3.23137 3.41870 3.52927 3.73999 3.81661 4.01058 4.06344 4.24399 4.24594 4.36657 4.39367 4.41216 4.43955 4.50084 4.59061 4.63694 4.69530 4.71661 4.77340 4.81230 4.84398 4.92026 4.93044 4.96012 5.02908 5.05436 5.07579 5.23040 5.44696 5.60611 5.82745 5.85287 6.08876 6.24490 6.81697 6.84146 7.10322 7.43689 8.94204 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035426 B = 0.003036 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.187745 B = 9220.991652 C = 9639.696194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.014 3.986 3 N -0.499 5.499 4 C -0.001 4.001 5 C 0.063 3.937 6 C 0.023 3.977 7 C -0.130 4.130 8 C -0.138 4.138 9 C 0.073 3.927 10 H 0.108 0.892 11 C 0.525 3.475 12 O -0.590 6.590 13 N -0.641 5.641 14 C 0.103 3.897 15 C 0.027 3.973 16 C -0.528 4.528 17 H 0.065 0.935 18 C 0.024 3.976 19 N -0.915 5.915 20 Si 0.956 3.044 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.112 3.888 25 O -0.345 6.345 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.265 0.735 43 H 0.071 0.929 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.957 -16.164 -3.135 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 N -0.222 5.222 4 C -0.129 4.129 5 C 0.023 3.977 6 C -0.106 4.106 7 C -0.168 4.168 8 C -0.176 4.176 9 C 0.013 3.987 10 H 0.125 0.875 11 C 0.316 3.684 12 O -0.471 6.471 13 N -0.375 5.375 14 C -0.019 4.019 15 C 0.008 3.992 16 C -0.566 4.566 17 H 0.083 0.917 18 C -0.176 4.176 19 N -0.553 5.553 20 Si 0.782 3.218 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.010 4.010 25 O -0.263 6.263 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.050 -15.708 -3.776 19.573 hybrid contribution 1.156 0.407 0.593 1.362 sum -9.894 -15.301 -3.184 18.497 Atomic orbital electron populations 1.21723 0.94388 1.02436 1.01873 1.22688 0.96997 0.89661 1.02069 1.68653 1.06898 1.16225 1.30439 1.24380 0.91290 0.97682 0.99594 1.23395 0.97737 0.83750 0.92835 1.23954 0.95447 0.98255 0.92903 1.22974 0.95379 1.01736 0.96718 1.22913 1.00536 0.98492 0.95639 1.22610 0.85743 0.89740 1.00650 0.87495 1.20701 0.81625 0.90131 0.75968 1.90623 1.32945 1.69419 1.54110 1.49935 1.06238 1.12942 1.68425 1.23286 0.95138 0.84197 0.99294 1.20234 0.91657 0.92960 0.94367 1.21183 0.92224 1.12571 1.30672 0.91718 1.25701 1.02045 0.95680 0.94198 1.70036 1.27765 1.24934 1.32551 0.85586 0.79023 0.78412 0.78810 1.20525 1.20932 1.19052 1.23484 0.75720 1.01138 1.00648 1.88849 1.27960 1.30885 1.78623 0.92899 0.93213 0.90545 0.90240 0.92506 0.89437 0.87232 0.87091 0.90277 0.86177 0.90429 0.87032 0.91600 0.89854 0.92805 0.93972 0.92581 0.91100 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.97 71.98 0.72 -1.32 16 2 C 0.01 0.21 5.53 86.30 0.48 0.68 16 3 N -0.50 -10.39 6.26 -934.87 -5.85 -16.25 16 4 C 0.00 -0.02 7.53 85.96 0.65 0.63 16 5 C 0.06 1.47 1.27 -10.66 -0.01 1.46 16 6 C 0.02 0.47 6.67 85.96 0.57 1.04 16 7 C -0.13 -2.63 6.49 31.56 0.20 -2.42 16 8 C -0.14 -3.51 5.85 31.68 0.19 -3.33 16 9 C 0.07 2.34 3.70 30.25 0.11 2.46 16 10 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 11 C 0.53 21.70 7.20 87.66 0.63 22.33 16 12 O -0.59 -29.22 17.30 15.68 0.27 -28.95 16 13 N -0.64 -26.05 3.67 -857.45 -3.15 -29.20 16 14 C 0.10 4.34 8.17 83.18 0.68 5.02 16 15 C 0.03 1.25 3.79 -11.13 -0.04 1.21 16 16 C -0.53 -26.19 8.83 25.60 0.23 -25.96 16 17 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 18 C 0.02 1.23 5.46 84.65 0.46 1.69 16 19 N -0.91 -48.24 13.26 21.45 0.28 -47.96 16 20 Si 0.96 39.89 29.54 68.60 2.03 41.91 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 24 C 0.11 4.47 7.82 83.25 0.65 5.12 16 25 O -0.35 -11.71 10.56 -130.28 -1.38 -13.08 16 26 H 0.05 0.75 7.54 -2.39 -0.02 0.73 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 0.64 7.71 -2.39 -0.02 0.63 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.11 1.35 7.66 -2.39 -0.02 1.33 16 33 H 0.11 1.58 7.79 -2.38 -0.02 1.57 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.12 1.56 7.95 -2.39 -0.02 1.54 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.07 1.98 7.69 -2.39 -0.02 1.97 16 39 H 0.08 3.34 8.10 -2.39 -0.02 3.32 16 40 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.04 2.15 8.11 -2.39 -0.02 2.13 16 42 H 0.27 13.31 8.31 -92.70 -0.77 12.54 16 43 H 0.07 2.68 7.54 -2.39 -0.02 2.66 16 44 H 0.08 3.17 8.10 -2.39 -0.02 3.15 16 Total: -1.00 -65.36 357.78 -1.32 -66.67 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.97 Total: 18.25 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.51 Total: 8.59 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -8.72 Total: -93.40 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -1.10 Total: -42.03 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.91 kcal Total: -65.36 -1.32 -66.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278169626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.699 kcal (2) G-P(sol) polarization free energy of solvation -65.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds