Wall clock time and date at job start Tue Mar 31 2020 07:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47451 * 2 1 4 4 C 1.48155 * 111.00197 * 170.00197 * 3 2 1 5 5 C 1.52876 * 85.85234 * 223.10759 * 4 3 2 6 6 C 1.48165 * 110.99728 * 70.43116 * 3 2 1 7 7 C 1.53470 * 115.58783 * 140.38574 * 5 4 3 8 8 C 1.54734 * 103.72453 * 152.73455 * 7 5 4 9 9 C 1.54554 * 104.07418 * 0.76342 * 8 7 5 10 10 H 1.08995 * 110.33115 * 95.34917 * 9 8 7 11 11 C 1.50693 * 110.32768 * 217.47241 * 9 8 7 12 12 O 1.21284 * 120.00310 * 113.55999 * 11 9 8 13 13 N 1.34780 * 120.00205 * 293.55470 * 11 9 8 14 14 C 1.47579 * 134.49439 * 180.02562 * 13 11 9 15 15 C 1.53950 * 86.11621 * 204.63969 * 14 13 11 16 16 C 1.50698 * 113.74185 * 221.94108 * 15 14 13 17 17 H 1.08004 * 119.99782 * 358.07289 * 16 15 14 18 18 C 1.37878 * 120.00154 * 178.07233 * 16 15 14 19 19 N 1.31516 * 120.00026 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99786 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.46951 * 90.00010 * 20 18 16 22 22 H 1.48503 * 109.47171 * 209.99585 * 20 18 16 23 23 H 1.48492 * 109.47519 * 329.99937 * 20 18 16 24 24 C 1.47925 * 134.49772 * 0.02562 * 13 11 9 25 25 O 1.43354 * 115.85187 * 265.71248 * 5 4 3 26 26 H 1.09003 * 109.47247 * 299.99867 * 1 2 3 27 27 H 1.08993 * 109.47490 * 59.99868 * 1 2 3 28 28 H 1.09003 * 109.47720 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46604 * 239.99927 * 2 1 3 30 30 H 1.09000 * 109.47103 * 120.00231 * 2 1 3 31 31 H 1.09003 * 113.80977 * 108.86967 * 4 3 2 32 32 H 1.09005 * 113.81177 * 337.33828 * 4 3 2 33 33 H 1.08995 * 113.81469 * 22.66721 * 6 3 2 34 34 H 1.09004 * 113.80791 * 251.12709 * 6 3 2 35 35 H 1.08995 * 110.57594 * 34.17517 * 7 5 4 36 36 H 1.09007 * 110.69847 * 271.35640 * 7 5 4 37 37 H 1.08997 * 110.51025 * 242.10899 * 8 7 5 38 38 H 1.09001 * 110.62269 * 119.46556 * 8 7 5 39 39 H 1.09003 * 113.77049 * 90.34034 * 14 13 11 40 40 H 1.08993 * 113.77081 * 318.93795 * 14 13 11 41 41 H 1.09002 * 113.74276 * 90.74001 * 15 14 13 42 42 H 0.96999 * 120.00183 * 180.02562 * 19 18 16 43 43 H 1.09006 * 113.87423 * 41.10256 * 24 13 11 44 44 H 1.08997 * 113.77410 * 269.60428 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4809 1.4314 0.2401 5 6 3.1774 2.5990 1.1791 6 6 1.7599 2.0399 1.3034 7 6 3.9924 2.6334 2.4791 8 6 4.0368 4.1362 2.8449 9 6 3.2219 4.8202 1.7239 10 1 2.1888 4.9637 2.0403 11 6 3.8445 6.1424 1.3563 12 8 4.3373 6.2965 0.2589 13 7 3.8535 7.1538 2.2471 14 6 4.3582 8.5406 2.2323 15 6 4.4309 8.4195 3.7653 16 6 3.9506 9.6478 4.4944 17 1 3.6284 10.5151 3.9371 18 6 3.9225 9.6644 5.8728 19 7 3.5038 10.7366 6.5090 20 14 4.4805 8.1646 6.8364 21 1 5.9360 8.2670 7.1124 22 1 3.7369 8.0963 8.1201 23 1 4.2122 6.9384 6.0431 24 6 3.3617 7.3199 3.6322 25 8 3.2820 3.9077 0.6033 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.0625 1.7125 -0.6379 32 1 3.8719 0.5492 0.7471 33 1 1.6336 1.3407 2.1299 34 1 0.9814 2.8019 1.2654 35 1 4.9987 2.2503 2.3105 36 1 3.4927 2.0630 3.2622 37 1 5.0647 4.4988 2.8456 38 1 3.5713 4.3090 3.8152 39 1 3.6275 9.2703 1.8834 40 1 5.3314 8.6488 1.7535 41 1 5.3910 8.0561 4.1317 42 1 3.4844 10.7484 7.4788 43 1 3.5400 6.4544 4.2704 44 1 2.3390 7.6918 3.6938 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278169627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:52 Heat of formation + Delta-G solvation = -1.658893 kcal Electronic energy + Delta-G solvation = -24268.242744 eV Core-core repulsion = 20802.277459 eV Total energy + Delta-G solvation = -3465.965285 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23710 -39.58063 -37.88865 -36.68742 -32.73867 -32.69544 -32.27478 -30.00472 -28.30220 -26.73817 -25.81564 -25.28853 -24.44061 -22.59919 -21.21562 -20.14712 -19.77048 -18.43180 -17.31084 -16.90412 -16.65286 -16.22075 -15.96271 -15.29671 -15.11785 -14.76624 -14.52466 -14.01470 -13.71268 -13.64029 -13.34098 -13.14514 -12.91112 -12.57927 -12.39914 -12.27423 -12.02073 -11.86600 -11.79478 -11.57106 -11.46965 -11.26533 -10.89912 -10.82102 -10.78656 -10.71245 -10.19152 -9.99989 -9.79855 -9.38073 -9.06212 -9.04133 -8.70658 -8.07213 -6.24490 -4.27276 2.86404 3.06426 3.15562 3.23125 3.26030 3.50360 3.88552 4.14324 4.25796 4.29643 4.46123 4.61507 4.73899 4.80576 4.84951 4.96457 5.01161 5.02104 5.14454 5.18196 5.31128 5.38742 5.43718 5.48987 5.53005 5.59771 5.67084 5.71226 5.80391 5.82785 5.88257 5.94071 6.07953 6.08503 6.15912 6.25963 6.34162 6.47308 6.71145 6.80638 7.10617 7.50085 8.23062 8.34974 8.59713 8.79674 9.35939 10.87708 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.003518 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.780050 B = 7956.316786 C = 8430.218122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.014 3.986 3 N -0.471 5.471 4 C 0.017 3.983 5 C 0.074 3.926 6 C -0.011 4.011 7 C -0.139 4.139 8 C -0.142 4.142 9 C 0.064 3.936 10 H 0.092 0.908 11 C 0.532 3.468 12 O -0.540 6.540 13 N -0.640 5.640 14 C 0.121 3.879 15 C -0.006 4.006 16 C -0.516 4.516 17 H 0.080 0.920 18 C 0.076 3.924 19 N -0.892 5.892 20 Si 0.874 3.126 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.259 1.259 24 C 0.084 3.916 25 O -0.307 6.307 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.266 0.734 43 H 0.065 0.935 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 -21.418 -5.432 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 N -0.194 5.194 4 C -0.111 4.111 5 C 0.033 3.967 6 C -0.140 4.140 7 C -0.177 4.177 8 C -0.180 4.180 9 C 0.003 3.997 10 H 0.110 0.890 11 C 0.320 3.680 12 O -0.418 6.418 13 N -0.376 5.376 14 C 0.000 4.000 15 C -0.025 4.025 16 C -0.554 4.554 17 H 0.098 0.902 18 C -0.128 4.128 19 N -0.529 5.529 20 Si 0.701 3.299 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.183 1.183 24 C -0.038 4.038 25 O -0.224 6.224 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.893 -21.103 -6.826 22.368 hybrid contribution 0.331 -1.247 1.628 2.077 sum -2.562 -22.350 -5.199 23.090 Atomic orbital electron populations 1.21725 0.94572 1.01577 1.02696 1.22632 0.96853 0.90862 1.01078 1.68683 1.06210 1.14480 1.30004 1.23983 0.91690 0.95675 0.99774 1.23070 0.94772 0.85964 0.92899 1.24428 0.98475 0.99111 0.92011 1.22795 1.01402 0.96837 0.96661 1.22915 1.01985 0.94475 0.98630 1.22840 0.99904 0.89827 0.87154 0.89046 1.19727 0.80111 0.84466 0.83727 1.90680 1.46800 1.82837 1.21475 1.50394 1.58435 1.12744 1.16000 1.23277 0.98390 0.80202 0.98174 1.20908 0.94725 0.94915 0.91968 1.20835 1.44193 0.98959 0.91370 0.90216 1.25016 0.94207 0.95833 0.97714 1.69893 1.46084 1.28163 1.08721 0.86938 0.79255 0.83939 0.79771 1.20180 1.21268 1.18318 1.24252 1.01386 0.99401 0.78790 1.89173 1.93607 1.12913 1.26725 0.92715 0.91732 0.92293 0.90521 0.94309 0.88072 0.89906 0.90292 0.88656 0.89886 0.89961 0.89950 0.89380 0.89973 0.91552 0.92482 0.92360 0.91720 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.97 37.16 0.37 -0.76 16 2 C 0.01 0.12 5.53 -3.83 -0.02 0.10 16 3 N -0.47 -5.13 6.26 -243.94 -1.53 -6.66 16 4 C 0.02 0.18 7.51 -3.20 -0.02 0.15 16 5 C 0.07 0.87 1.28 -90.62 -0.12 0.75 16 6 C -0.01 -0.11 6.60 -3.19 -0.02 -0.14 16 7 C -0.14 -1.39 6.49 -25.57 -0.17 -1.55 16 8 C -0.14 -1.78 6.08 -25.00 -0.15 -1.93 16 9 C 0.06 0.98 3.49 -27.07 -0.09 0.89 16 10 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 11 C 0.53 10.30 7.30 -10.99 -0.08 10.22 16 12 O -0.54 -12.52 17.28 -13.65 -0.24 -12.75 16 13 N -0.64 -12.16 3.61 -178.12 -0.64 -12.80 16 14 C 0.12 2.38 8.39 -2.97 -0.02 2.35 16 15 C -0.01 -0.12 2.89 -90.84 -0.26 -0.38 16 16 C -0.52 -13.01 9.33 -34.44 -0.32 -13.33 16 17 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 18 C 0.08 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.89 -25.27 13.96 55.43 0.77 -24.50 16 20 Si 0.87 19.09 27.08 -169.99 -4.60 14.48 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.26 -5.07 5.28 56.52 0.30 -4.77 16 24 C 0.08 1.55 7.10 -2.77 -0.02 1.53 16 25 O -0.31 -5.01 10.70 -54.44 -0.58 -5.60 16 26 H 0.05 0.42 7.54 -51.93 -0.39 0.03 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.28 7.71 -51.93 -0.40 -0.12 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.08 0.63 7.79 -51.93 -0.40 0.23 16 33 H 0.08 0.63 7.61 -51.93 -0.40 0.23 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.77 8.12 -51.93 -0.42 0.34 16 36 H 0.08 0.64 7.84 -51.92 -0.41 0.23 16 37 H 0.08 1.13 7.86 -51.93 -0.41 0.72 16 38 H 0.09 0.98 7.48 -51.93 -0.39 0.59 16 39 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.06 1.20 7.20 -51.93 -0.37 0.82 16 42 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.06 1.09 5.76 -51.93 -0.30 0.79 16 44 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -31.22 350.27 -9.92 -41.14 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.35 Total: 1.62 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.03 Total: -0.21 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -1.40 Total: -43.96 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.82 Total: -18.35 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.60 Total: 14.48 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.22 -9.92 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278169627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.477 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds