Wall clock time and date at job start Tue Mar 31 2020 07:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47451 * 2 1 4 4 C 1.48155 * 111.00197 * 170.00197 * 3 2 1 5 5 C 1.52876 * 85.85234 * 223.10759 * 4 3 2 6 6 C 1.48165 * 110.99728 * 70.43116 * 3 2 1 7 7 C 1.53470 * 115.58783 * 140.38574 * 5 4 3 8 8 C 1.54734 * 103.72453 * 152.73455 * 7 5 4 9 9 C 1.54554 * 104.07418 * 0.76342 * 8 7 5 10 10 H 1.08995 * 110.33115 * 95.34917 * 9 8 7 11 11 C 1.50693 * 110.32768 * 217.47241 * 9 8 7 12 12 O 1.21284 * 120.00310 * 113.55999 * 11 9 8 13 13 N 1.34780 * 120.00205 * 293.55470 * 11 9 8 14 14 C 1.47579 * 134.49439 * 180.02562 * 13 11 9 15 15 C 1.53950 * 86.11621 * 204.63969 * 14 13 11 16 16 C 1.50698 * 113.74185 * 221.94108 * 15 14 13 17 17 H 1.08004 * 119.99782 * 358.07289 * 16 15 14 18 18 C 1.37878 * 120.00154 * 178.07233 * 16 15 14 19 19 N 1.31516 * 120.00026 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99786 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.46951 * 90.00010 * 20 18 16 22 22 H 1.48503 * 109.47171 * 209.99585 * 20 18 16 23 23 H 1.48492 * 109.47519 * 329.99937 * 20 18 16 24 24 C 1.47925 * 134.49772 * 0.02562 * 13 11 9 25 25 O 1.43354 * 115.85187 * 265.71248 * 5 4 3 26 26 H 1.09003 * 109.47247 * 299.99867 * 1 2 3 27 27 H 1.08993 * 109.47490 * 59.99868 * 1 2 3 28 28 H 1.09003 * 109.47720 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46604 * 239.99927 * 2 1 3 30 30 H 1.09000 * 109.47103 * 120.00231 * 2 1 3 31 31 H 1.09003 * 113.80977 * 108.86967 * 4 3 2 32 32 H 1.09005 * 113.81177 * 337.33828 * 4 3 2 33 33 H 1.08995 * 113.81469 * 22.66721 * 6 3 2 34 34 H 1.09004 * 113.80791 * 251.12709 * 6 3 2 35 35 H 1.08995 * 110.57594 * 34.17517 * 7 5 4 36 36 H 1.09007 * 110.69847 * 271.35640 * 7 5 4 37 37 H 1.08997 * 110.51025 * 242.10899 * 8 7 5 38 38 H 1.09001 * 110.62269 * 119.46556 * 8 7 5 39 39 H 1.09003 * 113.77049 * 90.34034 * 14 13 11 40 40 H 1.08993 * 113.77081 * 318.93795 * 14 13 11 41 41 H 1.09002 * 113.74276 * 90.74001 * 15 14 13 42 42 H 0.96999 * 120.00183 * 180.02562 * 19 18 16 43 43 H 1.09006 * 113.87423 * 41.10256 * 24 13 11 44 44 H 1.08997 * 113.77410 * 269.60428 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4809 1.4314 0.2401 5 6 3.1774 2.5990 1.1791 6 6 1.7599 2.0399 1.3034 7 6 3.9924 2.6334 2.4791 8 6 4.0368 4.1362 2.8449 9 6 3.2219 4.8202 1.7239 10 1 2.1888 4.9637 2.0403 11 6 3.8445 6.1424 1.3563 12 8 4.3373 6.2965 0.2589 13 7 3.8535 7.1538 2.2471 14 6 4.3582 8.5406 2.2323 15 6 4.4309 8.4195 3.7653 16 6 3.9506 9.6478 4.4944 17 1 3.6284 10.5151 3.9371 18 6 3.9225 9.6644 5.8728 19 7 3.5038 10.7366 6.5090 20 14 4.4805 8.1646 6.8364 21 1 5.9360 8.2670 7.1124 22 1 3.7369 8.0963 8.1201 23 1 4.2122 6.9384 6.0431 24 6 3.3617 7.3199 3.6322 25 8 3.2820 3.9077 0.6033 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.0625 1.7125 -0.6379 32 1 3.8719 0.5492 0.7471 33 1 1.6336 1.3407 2.1299 34 1 0.9814 2.8019 1.2654 35 1 4.9987 2.2503 2.3105 36 1 3.4927 2.0630 3.2622 37 1 5.0647 4.4988 2.8456 38 1 3.5713 4.3090 3.8152 39 1 3.6275 9.2703 1.8834 40 1 5.3314 8.6488 1.7535 41 1 5.3910 8.0561 4.1317 42 1 3.4844 10.7484 7.4788 43 1 3.5400 6.4544 4.2704 44 1 2.3390 7.6918 3.6938 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278169627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:52 Heat of formation + Delta-G solvation = -24.203589 kcal Electronic energy + Delta-G solvation = -24269.220355 eV Core-core repulsion = 20802.277459 eV Total energy + Delta-G solvation = -3466.942896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.15032 -41.00933 -39.12038 -38.06440 -34.64944 -33.46365 -33.27518 -31.48499 -29.47672 -27.49045 -27.16773 -26.90295 -25.58980 -23.52588 -21.99248 -21.72741 -20.61589 -19.92025 -19.13910 -18.25986 -17.57297 -17.32223 -17.12720 -16.59074 -16.22005 -15.85221 -15.61837 -15.35492 -14.96238 -14.82845 -14.57760 -14.49042 -13.96762 -13.70122 -13.54241 -13.31417 -13.24765 -13.01447 -12.80304 -12.76265 -12.53161 -12.45704 -12.24066 -11.89160 -11.80402 -11.73251 -11.58340 -11.54007 -11.23794 -10.93790 -10.69861 -10.51091 -9.73398 -9.66074 -8.24193 -6.33076 1.44672 1.45032 1.48348 1.58250 1.69674 2.42815 2.59240 3.00502 3.08357 3.21947 3.38768 3.53964 3.78699 3.87034 3.97169 4.01790 4.07769 4.20935 4.30957 4.37025 4.38333 4.44249 4.47303 4.54919 4.57074 4.62890 4.71176 4.73971 4.76204 4.78197 4.88407 4.90744 4.93277 4.95856 5.04594 5.09163 5.22313 5.39786 5.44707 5.62165 5.81091 6.08946 6.29950 6.70230 6.79160 7.07346 7.34458 8.91477 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.003518 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.780050 B = 7956.316786 C = 8430.218122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.014 3.986 3 N -0.502 5.502 4 C 0.021 3.979 5 C 0.061 3.939 6 C -0.002 4.002 7 C -0.128 4.128 8 C -0.140 4.140 9 C 0.067 3.933 10 H 0.108 0.892 11 C 0.527 3.473 12 O -0.588 6.588 13 N -0.636 5.636 14 C 0.116 3.884 15 C -0.009 4.009 16 C -0.518 4.518 17 H 0.036 0.964 18 C 0.016 3.984 19 N -0.947 5.947 20 Si 0.940 3.060 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.215 1.215 24 C 0.098 3.902 25 O -0.346 6.346 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.267 0.733 43 H 0.096 0.904 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 -25.514 -3.908 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 N -0.226 5.226 4 C -0.107 4.107 5 C 0.020 3.980 6 C -0.131 4.131 7 C -0.166 4.166 8 C -0.178 4.178 9 C 0.007 3.993 10 H 0.126 0.874 11 C 0.317 3.683 12 O -0.468 6.468 13 N -0.371 5.371 14 C -0.006 4.006 15 C -0.029 4.029 16 C -0.556 4.556 17 H 0.054 0.946 18 C -0.182 4.182 19 N -0.586 5.586 20 Si 0.763 3.237 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.137 1.137 24 C -0.023 4.023 25 O -0.264 6.264 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.945 -25.223 -5.318 25.945 hybrid contribution 0.328 0.133 1.015 1.075 sum -2.617 -25.089 -4.303 25.590 Atomic orbital electron populations 1.21716 0.94350 1.02416 1.01890 1.22678 0.97009 0.89714 1.01978 1.68648 1.06699 1.16250 1.30971 1.24029 0.91407 0.96264 0.99039 1.23382 0.96343 0.84310 0.93946 1.24419 0.96924 0.99120 0.92627 1.22815 1.01995 0.95375 0.96402 1.22968 1.00728 0.95816 0.98330 1.22865 1.00725 0.87725 0.88029 0.87408 1.20560 0.79212 0.85715 0.82848 1.90650 1.48941 1.83800 1.23457 1.50349 1.58144 1.12265 1.16367 1.23208 0.98604 0.81164 0.97600 1.20846 0.95886 0.94190 0.91971 1.20989 1.43598 0.99365 0.91633 0.94559 1.25954 0.94205 0.99217 0.98836 1.70060 1.48392 1.31089 1.09059 0.85879 0.78279 0.81307 0.78206 1.20284 1.21604 1.13738 1.24107 1.00351 0.99202 0.78685 1.89141 1.93979 1.15143 1.28186 0.92700 0.93350 0.90630 0.90542 0.92396 0.90117 0.86800 0.87355 0.90023 0.89129 0.86666 0.91329 0.87112 0.90595 0.91274 0.91498 0.92402 0.88600 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.97 71.98 0.72 -1.18 16 2 C 0.01 0.20 5.53 86.30 0.48 0.67 16 3 N -0.50 -9.89 6.26 -931.15 -5.83 -15.72 16 4 C 0.02 0.38 7.51 86.02 0.65 1.02 16 5 C 0.06 1.25 1.28 -10.67 -0.01 1.24 16 6 C 0.00 -0.04 6.60 86.02 0.57 0.53 16 7 C -0.13 -1.98 6.49 31.34 0.20 -1.78 16 8 C -0.14 -2.95 6.08 31.71 0.19 -2.76 16 9 C 0.07 1.92 3.49 30.37 0.11 2.03 16 10 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 11 C 0.53 19.94 7.30 87.65 0.64 20.58 16 12 O -0.59 -27.58 17.28 15.33 0.26 -27.31 16 13 N -0.64 -23.31 3.61 -835.83 -3.02 -26.33 16 14 C 0.12 4.58 8.39 86.49 0.73 5.31 16 15 C -0.01 -0.38 2.89 -10.88 -0.03 -0.42 16 16 C -0.52 -26.51 9.33 25.60 0.24 -26.27 16 17 H 0.04 2.11 8.06 -2.91 -0.02 2.09 16 18 C 0.02 0.84 5.47 84.65 0.46 1.30 16 19 N -0.95 -55.03 13.96 21.45 0.30 -54.73 16 20 Si 0.94 37.75 27.08 68.60 1.86 39.61 16 21 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 22 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.22 -7.02 5.28 99.48 0.53 -6.49 16 24 C 0.10 3.35 7.10 86.42 0.61 3.96 16 25 O -0.35 -10.94 10.70 -130.61 -1.40 -12.34 16 26 H 0.05 0.70 7.54 -2.39 -0.02 0.69 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 0.58 7.71 -2.39 -0.02 0.56 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 32 H 0.11 1.29 7.79 -2.38 -0.02 1.27 16 33 H 0.11 1.19 7.61 -2.39 -0.02 1.17 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 36 H 0.12 1.06 7.84 -2.38 -0.02 1.04 16 37 H 0.07 1.64 7.86 -2.39 -0.02 1.63 16 38 H 0.11 1.82 7.48 -2.39 -0.02 1.80 16 39 H 0.08 3.06 8.09 -2.39 -0.02 3.04 16 40 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.07 2.63 7.20 -2.39 -0.02 2.62 16 42 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.10 2.71 5.76 -2.38 -0.01 2.69 16 44 H 0.09 3.04 8.09 -2.39 -0.02 3.02 16 Total: -1.00 -71.39 350.27 -1.49 -72.88 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.79 Total: 19.72 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.55 Total: 4.23 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -8.55 Total: -96.79 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.13 Total: -39.65 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 1.86 Total: 39.61 kcal Total: -71.39 -1.49 -72.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278169627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.675 kcal (2) G-P(sol) polarization free energy of solvation -71.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds