Wall clock time and date at job start Tue Mar 31 2020 07:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42890 * 109.46978 * 254.66799 * 3 2 1 5 5 C 1.42902 * 114.00088 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.46726 * 329.99985 * 5 4 3 7 7 C 1.52997 * 109.47283 * 89.99915 * 5 4 3 8 8 C 1.50708 * 109.47067 * 210.00048 * 5 4 3 9 9 O 1.21281 * 120.00209 * 354.99811 * 8 5 4 10 10 N 1.34777 * 119.99566 * 174.99608 * 8 5 4 11 11 C 1.46964 * 120.65534 * 2.96186 * 10 8 5 12 12 C 1.53195 * 108.88554 * 233.53434 * 11 10 8 13 13 C 1.53042 * 109.31330 * 305.44362 * 12 11 10 14 14 C 1.53041 * 109.53721 * 61.36356 * 13 12 11 15 15 C 1.46929 * 120.62527 * 183.14358 * 10 8 5 16 16 H 1.09000 * 109.58288 * 246.32027 * 15 10 8 17 17 C 1.52990 * 109.58782 * 6.60377 * 15 10 8 18 18 N 1.46498 * 109.47148 * 287.43330 * 17 15 10 19 19 C 1.36942 * 119.99832 * 185.38562 * 18 17 15 20 20 H 1.07997 * 120.00244 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99717 * 180.02562 * 19 18 17 22 22 N 1.31616 * 119.99933 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00284 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46938 * 90.00112 * 23 21 19 25 25 H 1.48494 * 109.47655 * 210.00264 * 23 21 19 26 26 H 1.48506 * 109.47243 * 330.00683 * 23 21 19 27 27 H 4.38441 * 5.44378 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.46816 * 134.66986 * 3 2 1 29 29 H 1.08992 * 109.47216 * 14.67268 * 3 2 1 30 30 H 1.09000 * 109.47197 * 180.02562 * 7 5 4 31 31 H 1.08998 * 109.47443 * 300.00119 * 7 5 4 32 32 H 1.09005 * 109.47182 * 60.00350 * 7 5 4 33 33 H 1.08994 * 109.46764 * 113.75162 * 11 10 8 34 34 H 1.08997 * 109.59495 * 353.39522 * 11 10 8 35 35 H 1.09004 * 109.49467 * 185.49249 * 12 11 10 36 36 H 1.08999 * 109.52186 * 65.41063 * 12 11 10 37 37 H 1.09002 * 109.46076 * 301.34875 * 13 12 11 38 38 H 1.08996 * 109.45026 * 181.37779 * 13 12 11 39 39 H 1.08996 * 109.49830 * 178.68176 * 14 13 12 40 40 H 1.08997 * 109.49532 * 58.58991 * 14 13 12 41 41 H 1.08997 * 109.47199 * 47.43847 * 17 15 10 42 42 H 1.09008 * 109.47155 * 167.43418 * 17 15 10 43 43 H 0.96994 * 120.00470 * 5.38756 * 18 17 15 44 44 H 0.96998 * 120.00456 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1221 0.3571 1.2992 5 6 4.5467 0.3881 1.4080 6 1 4.9797 -0.3340 0.7157 7 6 5.0539 1.7904 1.0656 8 6 4.9507 0.0379 2.8170 9 8 4.1025 -0.1245 3.6685 10 7 6.2547 -0.0947 3.1308 11 6 7.2969 0.1620 2.1269 12 6 8.2193 -1.0585 2.0465 13 6 8.7571 -1.3794 3.4430 14 6 7.5911 -1.7157 4.3755 15 6 6.6615 -0.5028 4.4824 16 1 7.1871 0.3186 4.9693 17 6 5.4234 -0.8759 5.3000 18 7 4.6813 0.3393 5.6445 19 6 3.5915 0.2651 6.4704 20 1 3.2794 -0.6893 6.8682 21 6 2.8880 1.4165 6.7964 22 7 1.8410 1.3452 7.5906 23 14 3.4282 3.0672 6.1090 24 1 2.7423 3.3129 4.8149 25 1 3.0739 4.1432 7.0691 26 1 4.8979 3.0578 5.8962 27 1 -1.0500 0.0001 -0.0002 28 1 3.0090 0.7233 -0.7309 29 1 3.0098 -0.9933 -0.2603 30 1 6.1405 1.8139 1.1480 31 1 4.7617 2.0437 0.0465 32 1 4.6209 2.5125 1.7578 33 1 7.8751 1.0384 2.4196 34 1 6.8340 0.3348 1.1554 35 1 9.0518 -0.8418 1.3770 36 1 7.6600 -1.9134 1.6667 37 1 9.2956 -0.5153 3.8322 38 1 9.4329 -2.2325 3.3844 39 1 7.9764 -1.9669 5.3637 40 1 7.0373 -2.5643 3.9740 41 1 4.7859 -1.5369 4.7129 42 1 5.7311 -1.3850 6.2135 43 1 4.9617 1.1965 5.2875 44 1 1.3495 2.1498 7.8187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280441040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:19 Heat of formation + Delta-G solvation = 39.645514 kcal Electronic energy + Delta-G solvation = -25317.423335 eV Core-core repulsion = 21853.249143 eV Total energy + Delta-G solvation = -3464.174192 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.45691 -38.27009 -36.76602 -34.75985 -33.43748 -32.87746 -32.02369 -30.65834 -30.13844 -27.14016 -26.49598 -24.70372 -23.69944 -22.47200 -21.30155 -20.46366 -19.19778 -18.47264 -17.36705 -16.90467 -16.45740 -15.80338 -15.35622 -14.90093 -14.79367 -14.56050 -14.34289 -13.90683 -13.77571 -13.48733 -13.30644 -12.87790 -12.54542 -12.50676 -12.31451 -12.19830 -12.02441 -11.76646 -11.33442 -11.22319 -11.05184 -10.85187 -10.69493 -10.61813 -10.58363 -10.49774 -10.22212 -9.92405 -9.63894 -9.31589 -8.64108 -8.40384 -8.14382 -6.73550 -5.47645 -2.73732 2.40786 2.80816 3.14571 3.18463 3.53617 3.60745 3.63459 4.00921 4.44966 4.62492 4.68269 4.77042 4.82789 4.86677 4.89584 5.03688 5.04348 5.08183 5.28696 5.30678 5.32305 5.49760 5.52501 5.60943 5.66614 5.72720 5.82890 5.85392 5.88948 5.91520 5.99267 6.04515 6.11726 6.17238 6.36106 6.56400 6.83266 7.06909 7.20831 7.58136 7.78921 8.27576 8.70649 8.82030 9.52204 10.25785 10.46549 11.72579 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.008410 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.348255 B = 3328.438646 C = 5578.498692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.193 4.193 3 C 0.172 3.828 4 O -0.344 6.344 5 C 0.074 3.926 6 H 0.079 0.921 7 C -0.182 4.182 8 C 0.469 3.531 9 O -0.420 6.420 10 N -0.615 5.615 11 C 0.102 3.898 12 C -0.135 4.135 13 C -0.118 4.118 14 C -0.127 4.127 15 C 0.140 3.860 16 H 0.069 0.931 17 C 0.166 3.834 18 N -0.722 5.722 19 C -0.208 4.208 20 H 0.085 0.915 21 C -0.004 4.004 22 N -0.945 5.945 23 Si 0.885 3.115 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.284 1.284 27 H 0.222 0.778 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.025 0.975 43 H 0.356 0.644 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.694 -4.175 -19.578 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.193 4.193 3 C 0.096 3.904 4 O -0.262 6.262 5 C 0.012 3.988 6 H 0.097 0.903 7 C -0.240 4.240 8 C 0.252 3.748 9 O -0.286 6.286 10 N -0.355 5.355 11 C -0.021 4.021 12 C -0.173 4.173 13 C -0.155 4.155 14 C -0.166 4.166 15 C 0.037 3.963 16 H 0.087 0.913 17 C 0.039 3.961 18 N -0.366 5.366 19 C -0.338 4.338 20 H 0.103 0.897 21 C -0.198 4.198 22 N -0.596 5.596 23 Si 0.717 3.283 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.211 1.211 27 H 0.239 0.761 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.189 0.811 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.863 -4.316 -18.782 23.170 hybrid contribution 0.317 1.301 -0.870 1.597 sum 13.180 -3.015 -19.651 23.854 Atomic orbital electron populations 1.24960 0.95893 1.00396 0.97603 1.22423 0.93848 1.00885 1.02118 1.19122 0.85174 0.99813 0.86313 1.88230 1.19034 1.89905 1.29016 1.21930 0.82650 0.97728 0.96451 0.90322 1.22491 1.02092 0.96741 1.02648 1.20274 0.83214 0.81637 0.89678 1.91270 1.49408 1.42487 1.45429 1.47905 1.04755 1.71025 1.11862 1.21884 0.90145 0.97535 0.92571 1.21938 0.99107 0.98594 0.97703 1.21499 0.97601 1.01458 0.94991 1.21901 0.96254 0.98195 1.00204 1.21541 0.96849 0.96003 0.81935 0.91329 1.20809 0.89327 0.91347 0.94600 1.42543 1.33560 1.03286 1.57237 1.18993 1.02150 0.95273 1.17410 0.89706 1.24530 0.97796 0.97009 1.00422 1.69698 1.21238 1.27394 1.41247 0.86513 0.77544 0.85764 0.78511 1.21340 1.22362 1.21095 0.76137 0.91079 0.91011 0.90284 0.91664 0.90895 0.91662 0.89674 0.91124 0.91550 0.91859 0.91900 0.90638 0.91418 0.93985 0.95698 0.81142 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 19.25 29.55 0.57 -1.70 16 2 C -0.19 -2.85 13.73 -37.12 -0.51 -3.36 16 3 C 0.17 2.21 6.22 34.37 0.21 2.43 16 4 O -0.34 -6.03 9.48 -55.09 -0.52 -6.56 16 5 C 0.07 1.05 2.31 -27.88 -0.06 0.99 16 6 H 0.08 0.82 7.22 -51.93 -0.37 0.45 16 7 C -0.18 -2.15 9.07 37.16 0.34 -1.81 16 8 C 0.47 8.50 6.73 -10.98 -0.07 8.42 16 9 O -0.42 -10.21 10.22 -14.30 -0.15 -10.36 16 10 N -0.62 -9.06 2.98 -165.19 -0.49 -9.55 16 11 C 0.10 1.00 5.04 -3.69 -0.02 0.98 16 12 C -0.14 -1.10 6.08 -26.61 -0.16 -1.26 16 13 C -0.12 -1.07 5.88 -26.69 -0.16 -1.22 16 14 C -0.13 -1.51 5.34 -26.61 -0.14 -1.65 16 15 C 0.14 2.22 2.90 -67.60 -0.20 2.03 16 16 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 17 C 0.17 3.55 4.89 -4.05 -0.02 3.53 16 18 N -0.72 -19.05 3.01 -59.91 -0.18 -19.23 16 19 C -0.21 -6.50 10.22 -15.06 -0.15 -6.65 16 20 H 0.09 2.84 8.06 -52.49 -0.42 2.41 16 21 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 22 N -0.95 -32.32 13.97 55.49 0.78 -31.54 16 23 Si 0.88 24.84 27.73 -169.99 -4.71 20.13 16 24 H -0.29 -8.20 7.11 56.52 0.40 -7.80 16 25 H -0.30 -8.28 7.11 56.52 0.40 -7.88 16 26 H -0.28 -7.49 6.52 56.52 0.37 -7.12 16 27 H 0.22 2.04 7.80 -54.09 -0.42 1.62 16 28 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 29 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 30 H 0.08 0.74 5.20 -51.93 -0.27 0.47 16 31 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.68 4.49 -51.93 -0.23 0.44 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.99 6.35 -51.93 -0.33 0.66 16 42 H 0.03 0.53 8.10 -51.92 -0.42 0.11 16 43 H 0.36 9.41 5.06 -40.82 -0.21 9.21 16 44 H 0.25 8.29 8.31 -40.82 -0.34 7.95 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -39.90 348.97 -7.38 -47.28 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.89 Total: 4.07 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.47 Total: 0.49 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.10 Total: -60.32 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.67 Total: -16.91 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.71 Total: 20.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -39.90 -7.38 -47.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280441040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.930 kcal (2) G-P(sol) polarization free energy of solvation -39.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds