Wall clock time and date at job start Tue Mar 31 2020 07:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 O 1.42890 * 109.46978 * 254.66799 * 3 2 1 5 5 C 1.42902 * 114.00088 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.46726 * 329.99985 * 5 4 3 7 7 C 1.52997 * 109.47283 * 89.99915 * 5 4 3 8 8 C 1.50708 * 109.47067 * 210.00048 * 5 4 3 9 9 O 1.21281 * 120.00209 * 354.99811 * 8 5 4 10 10 N 1.34777 * 119.99566 * 174.99608 * 8 5 4 11 11 C 1.46964 * 120.65534 * 2.96186 * 10 8 5 12 12 C 1.53195 * 108.88554 * 233.53434 * 11 10 8 13 13 C 1.53042 * 109.31330 * 305.44362 * 12 11 10 14 14 C 1.53041 * 109.53721 * 61.36356 * 13 12 11 15 15 C 1.46929 * 120.62527 * 183.14358 * 10 8 5 16 16 H 1.09000 * 109.58288 * 246.32027 * 15 10 8 17 17 C 1.52990 * 109.58782 * 6.60377 * 15 10 8 18 18 N 1.46498 * 109.47148 * 287.43330 * 17 15 10 19 19 C 1.36942 * 119.99832 * 185.38562 * 18 17 15 20 20 H 1.07997 * 120.00244 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99717 * 180.02562 * 19 18 17 22 22 N 1.31616 * 119.99933 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00284 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46938 * 90.00112 * 23 21 19 25 25 H 1.48494 * 109.47655 * 210.00264 * 23 21 19 26 26 H 1.48506 * 109.47243 * 330.00683 * 23 21 19 27 27 H 4.38441 * 5.44378 * 179.97438 * 4 1 2 28 28 H 1.09000 * 109.46816 * 134.66986 * 3 2 1 29 29 H 1.08992 * 109.47216 * 14.67268 * 3 2 1 30 30 H 1.09000 * 109.47197 * 180.02562 * 7 5 4 31 31 H 1.08998 * 109.47443 * 300.00119 * 7 5 4 32 32 H 1.09005 * 109.47182 * 60.00350 * 7 5 4 33 33 H 1.08994 * 109.46764 * 113.75162 * 11 10 8 34 34 H 1.08997 * 109.59495 * 353.39522 * 11 10 8 35 35 H 1.09004 * 109.49467 * 185.49249 * 12 11 10 36 36 H 1.08999 * 109.52186 * 65.41063 * 12 11 10 37 37 H 1.09002 * 109.46076 * 301.34875 * 13 12 11 38 38 H 1.08996 * 109.45026 * 181.37779 * 13 12 11 39 39 H 1.08996 * 109.49830 * 178.68176 * 14 13 12 40 40 H 1.08997 * 109.49532 * 58.58991 * 14 13 12 41 41 H 1.08997 * 109.47199 * 47.43847 * 17 15 10 42 42 H 1.09008 * 109.47155 * 167.43418 * 17 15 10 43 43 H 0.96994 * 120.00470 * 5.38756 * 18 17 15 44 44 H 0.96998 * 120.00456 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1221 0.3571 1.2992 5 6 4.5467 0.3881 1.4080 6 1 4.9797 -0.3340 0.7157 7 6 5.0539 1.7904 1.0656 8 6 4.9507 0.0379 2.8170 9 8 4.1025 -0.1245 3.6685 10 7 6.2547 -0.0947 3.1308 11 6 7.2969 0.1620 2.1269 12 6 8.2193 -1.0585 2.0465 13 6 8.7571 -1.3794 3.4430 14 6 7.5911 -1.7157 4.3755 15 6 6.6615 -0.5028 4.4824 16 1 7.1871 0.3186 4.9693 17 6 5.4234 -0.8759 5.3000 18 7 4.6813 0.3393 5.6445 19 6 3.5915 0.2651 6.4704 20 1 3.2794 -0.6893 6.8682 21 6 2.8880 1.4165 6.7964 22 7 1.8410 1.3452 7.5906 23 14 3.4282 3.0672 6.1090 24 1 2.7423 3.3129 4.8149 25 1 3.0739 4.1432 7.0691 26 1 4.8979 3.0578 5.8962 27 1 -1.0500 0.0001 -0.0002 28 1 3.0090 0.7233 -0.7309 29 1 3.0098 -0.9933 -0.2603 30 1 6.1405 1.8139 1.1480 31 1 4.7617 2.0437 0.0465 32 1 4.6209 2.5125 1.7578 33 1 7.8751 1.0384 2.4196 34 1 6.8340 0.3348 1.1554 35 1 9.0518 -0.8418 1.3770 36 1 7.6600 -1.9134 1.6667 37 1 9.2956 -0.5153 3.8322 38 1 9.4329 -2.2325 3.3844 39 1 7.9764 -1.9669 5.3637 40 1 7.0373 -2.5643 3.9740 41 1 4.7859 -1.5369 4.7129 42 1 5.7311 -1.3850 6.2135 43 1 4.9617 1.1965 5.2875 44 1 1.3495 2.1498 7.8187 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280441040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:18 Heat of formation + Delta-G solvation = 10.917242 kcal Electronic energy + Delta-G solvation = -25318.669086 eV Core-core repulsion = 21853.249143 eV Total energy + Delta-G solvation = -3465.419943 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69784 -39.36669 -37.97721 -36.56960 -34.69420 -33.97102 -33.71250 -32.18068 -31.44198 -28.16861 -27.90894 -26.08656 -24.73077 -24.07468 -22.85267 -21.47559 -20.42266 -19.78924 -19.23330 -18.00006 -17.65492 -16.97646 -16.60851 -16.40008 -16.08053 -15.86555 -15.65448 -15.35726 -14.90188 -14.69737 -14.63383 -14.17653 -14.02018 -13.82142 -13.71689 -13.38954 -13.35536 -13.11636 -12.88771 -12.62815 -12.34439 -12.20113 -12.00363 -11.84970 -11.73907 -11.67075 -11.58467 -11.42394 -11.31904 -10.95485 -10.64881 -9.82849 -9.49121 -8.93165 -7.97304 -5.18963 1.23727 1.34856 1.35323 1.38025 1.76788 1.85809 2.05345 2.50002 3.04013 3.34941 3.45885 3.60954 3.70288 3.83536 3.95090 3.98580 4.04737 4.13879 4.20351 4.30762 4.33456 4.39144 4.44057 4.61700 4.64470 4.70551 4.81057 4.84644 4.96513 4.98764 5.04665 5.14085 5.16686 5.19496 5.28390 5.32215 5.54335 5.75776 5.78826 6.09482 6.26474 6.55642 6.61048 7.15415 7.52404 7.95440 8.13528 9.26693 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.008410 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.348255 B = 3328.438646 C = 5578.498692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.238 4.238 3 C 0.165 3.835 4 O -0.395 6.395 5 C 0.075 3.925 6 H 0.124 0.876 7 C -0.176 4.176 8 C 0.462 3.538 9 O -0.504 6.504 10 N -0.609 5.609 11 C 0.091 3.909 12 C -0.129 4.129 13 C -0.114 4.114 14 C -0.120 4.120 15 C 0.145 3.855 16 H 0.070 0.930 17 C 0.166 3.834 18 N -0.719 5.719 19 C -0.194 4.194 20 H 0.045 0.955 21 C -0.077 4.077 22 N -0.995 5.995 23 Si 0.959 3.041 24 H -0.297 1.297 25 H -0.291 1.291 26 H -0.256 1.256 27 H 0.251 0.749 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.357 0.643 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.413 -3.427 -23.103 29.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.238 4.238 3 C 0.090 3.910 4 O -0.315 6.315 5 C 0.014 3.986 6 H 0.141 0.859 7 C -0.233 4.233 8 C 0.248 3.752 9 O -0.376 6.376 10 N -0.348 5.348 11 C -0.030 4.030 12 C -0.167 4.167 13 C -0.151 4.151 14 C -0.158 4.158 15 C 0.041 3.959 16 H 0.088 0.912 17 C 0.040 3.960 18 N -0.363 5.363 19 C -0.326 4.326 20 H 0.063 0.937 21 C -0.267 4.267 22 N -0.649 5.649 23 Si 0.789 3.211 24 H -0.225 1.225 25 H -0.218 1.218 26 H -0.181 1.181 27 H 0.267 0.733 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.189 0.811 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 16.701 -3.593 -22.367 28.145 hybrid contribution -0.851 0.900 0.160 1.249 sum 15.849 -2.693 -22.207 27.415 Atomic orbital electron populations 1.25885 0.97049 0.99589 0.96444 1.23323 0.95410 1.01851 1.03226 1.19483 0.84262 1.01996 0.85211 1.88166 1.21023 1.90418 1.31848 1.22089 0.81767 1.00329 0.94374 0.85863 1.22499 1.03572 0.93883 1.03332 1.21217 0.83440 0.79574 0.90954 1.91232 1.51609 1.46554 1.48172 1.48062 1.05071 1.69365 1.12264 1.22339 0.89321 0.99189 0.92153 1.21938 0.99661 0.97512 0.97622 1.21507 0.96286 1.02639 0.94689 1.21858 0.96534 0.95785 1.01660 1.21393 0.94425 0.97875 0.82159 0.91232 1.20862 0.90871 0.89322 0.94917 1.42454 1.32491 1.04923 1.56403 1.18974 1.03176 0.93603 1.16851 0.93735 1.25338 0.98359 1.01261 1.01712 1.69886 1.23086 1.28373 1.43512 0.85318 0.78510 0.80457 0.76865 1.22453 1.21776 1.18118 0.73304 0.87739 0.88809 0.87344 0.88566 0.94670 0.90062 0.87185 0.87678 0.91756 0.91105 0.89915 0.90232 0.92175 0.96462 0.96261 0.81067 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.53 19.25 74.32 1.43 -3.09 16 2 C -0.24 -6.96 13.73 31.13 0.43 -6.53 16 3 C 0.17 4.00 6.22 70.18 0.44 4.43 16 4 O -0.39 -13.70 9.48 -129.99 -1.23 -14.93 16 5 C 0.07 1.96 2.31 29.85 0.07 2.03 16 6 H 0.12 2.04 7.22 -2.38 -0.02 2.02 16 7 C -0.18 -3.54 9.07 71.98 0.65 -2.88 16 8 C 0.46 16.49 6.73 87.66 0.59 17.08 16 9 O -0.50 -25.46 10.22 15.95 0.16 -25.30 16 10 N -0.61 -16.61 2.98 -794.94 -2.37 -18.98 16 11 C 0.09 1.33 5.04 86.36 0.43 1.77 16 12 C -0.13 -1.40 6.08 30.67 0.19 -1.22 16 13 C -0.11 -1.55 5.88 30.62 0.18 -1.37 16 14 C -0.12 -2.60 5.34 30.67 0.16 -2.44 16 15 C 0.14 4.46 2.90 44.97 0.13 4.59 16 16 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 17 C 0.17 7.39 4.89 86.38 0.42 7.81 16 18 N -0.72 -39.27 3.01 -343.46 -1.03 -40.30 16 19 C -0.19 -12.80 10.22 84.03 0.86 -11.94 16 20 H 0.04 3.21 8.06 -2.91 -0.02 3.19 16 21 C -0.08 -5.20 5.50 84.86 0.47 -4.73 16 22 N -0.99 -71.23 13.97 21.65 0.30 -70.93 16 23 Si 0.96 53.24 27.73 68.60 1.90 55.14 16 24 H -0.30 -16.88 7.11 99.48 0.71 -16.17 16 25 H -0.29 -15.74 7.11 99.48 0.71 -15.04 16 26 H -0.26 -12.82 6.52 99.48 0.65 -12.17 16 27 H 0.25 4.37 7.80 -4.42 -0.03 4.34 16 28 H 0.10 1.73 7.87 -2.39 -0.02 1.71 16 29 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 30 H 0.11 1.47 5.20 -2.39 -0.01 1.46 16 31 H 0.10 1.35 7.87 -2.39 -0.02 1.33 16 32 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.11 1.08 4.49 -2.39 -0.01 1.07 16 35 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.02 0.87 6.35 -2.39 -0.02 0.86 16 42 H 0.02 0.87 8.10 -2.38 -0.02 0.85 16 43 H 0.36 19.05 5.06 -92.71 -0.47 18.58 16 44 H 0.25 17.19 8.31 -92.71 -0.77 16.42 16 Total: -1.00 -96.11 348.97 4.64 -91.47 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.46 Total: 20.34 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 6.45 Total: 3.49 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -3.10 Total: -130.21 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.07 Total: -40.23 kcal Atomic # 14 Polarization: 53.24 SS G_CDS: 1.90 Total: 55.14 kcal Total: -96.11 4.64 -91.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280441040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.386 kcal (2) G-P(sol) polarization free energy of solvation -96.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds