Wall clock time and date at job start Tue Mar 31 2020 07:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47156 * 2 1 4 4 N 1.46500 * 109.47390 * 239.99298 * 2 1 3 5 5 C 1.34782 * 119.99862 * 85.00073 * 4 2 1 6 6 O 1.21345 * 119.99870 * 0.02562 * 5 4 2 7 7 C 1.49447 * 119.99773 * 180.02562 * 5 4 2 8 8 O 1.21347 * 120.00436 * 5.09333 * 7 5 4 9 9 N 1.34784 * 119.99725 * 185.09006 * 7 5 4 10 10 C 1.46499 * 119.99673 * 185.04007 * 9 7 5 11 11 C 1.53004 * 109.46515 * 184.77991 * 10 9 7 12 12 C 1.50699 * 115.54970 * 294.81164 * 11 10 9 13 13 H 1.08006 * 119.99747 * 95.20454 * 12 11 10 14 14 C 1.37882 * 120.00306 * 274.92941 * 12 11 10 15 15 N 1.31511 * 120.00039 * 355.41933 * 14 12 11 16 16 Si 1.86799 * 119.99919 * 175.41893 * 14 12 11 17 17 H 1.48498 * 109.47309 * 90.00203 * 16 14 12 18 18 H 1.48504 * 109.47121 * 210.00289 * 16 14 12 19 19 H 1.48503 * 109.47246 * 329.99719 * 16 14 12 20 20 C 1.52999 * 117.50036 * 80.48949 * 11 10 9 21 21 C 1.53004 * 117.49737 * 149.15233 * 11 10 9 22 22 C 1.53008 * 109.47119 * 119.99559 * 2 1 3 23 23 C 1.53784 * 113.60961 * 282.52487 * 22 2 1 24 24 C 1.53783 * 87.07785 * 220.01485 * 23 22 2 25 25 C 1.53779 * 113.61523 * 185.02958 * 22 2 1 26 26 H 1.09000 * 109.47200 * 304.96787 * 1 2 3 27 27 H 1.08998 * 109.46540 * 64.96592 * 1 2 3 28 28 H 1.08995 * 109.46898 * 184.96100 * 1 2 3 29 29 H 0.97003 * 120.00156 * 265.00277 * 4 2 1 30 30 H 0.96996 * 119.99636 * 5.03674 * 9 7 5 31 31 H 1.09000 * 109.47234 * 64.78378 * 10 9 7 32 32 H 1.08998 * 109.47182 * 304.77485 * 10 9 7 33 33 H 0.96994 * 120.00346 * 184.99812 * 15 14 12 34 34 H 1.08999 * 117.49333 * 215.00262 * 20 11 10 35 35 H 1.08999 * 117.50051 * 0.02562 * 20 11 10 36 36 H 1.09004 * 117.49670 * 359.96813 * 21 11 10 37 37 H 1.08993 * 117.49945 * 144.97391 * 21 11 10 38 38 H 1.08995 * 112.84847 * 53.82761 * 22 2 1 39 39 H 1.08994 * 113.61867 * 334.56719 * 23 22 2 40 40 H 1.08997 * 113.61304 * 105.47532 * 23 22 2 41 41 H 1.09002 * 113.61768 * 270.88781 * 24 23 22 42 42 H 1.09006 * 113.68979 * 139.99310 * 24 23 22 43 43 H 1.09008 * 113.60831 * 254.52832 * 25 22 2 44 44 H 1.08997 * 113.61298 * 25.42703 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0185 -2.3571 6 8 1.8590 1.1590 -2.4116 7 6 2.6448 -0.7233 -3.5774 8 8 2.8451 -1.9197 -3.5478 9 7 2.8713 -0.0299 -4.7108 10 6 3.2526 -0.7351 -5.9370 11 6 3.5641 0.2837 -7.0352 12 6 2.3982 1.1205 -7.4951 13 1 2.2327 2.0980 -7.0664 14 6 1.5461 0.6408 -8.4672 15 7 1.8011 -0.5066 -9.0571 16 14 0.0295 1.6205 -8.9461 17 1 0.3696 2.5494 -10.0537 18 1 -1.0403 0.6912 -9.3902 19 1 -0.4465 2.3998 -7.7750 20 6 4.9438 0.9447 -7.0149 21 6 4.6121 -0.1028 -8.0808 22 6 2.0400 -0.7212 1.2494 23 6 1.9572 0.1289 2.5282 24 6 3.3259 -0.4576 2.9124 25 6 3.5687 -0.6707 1.4089 26 1 -0.3633 0.5890 0.8421 27 1 -0.3632 0.4349 -0.9311 28 1 -0.3633 -1.0238 0.0889 29 1 2.2491 -1.6319 -1.1524 30 1 2.7816 0.9359 -4.7146 31 1 2.4313 -1.3757 -6.2581 32 1 4.1358 -1.3447 -5.7459 33 1 1.2432 -0.8094 -9.7904 34 1 5.0081 1.9850 -7.3342 35 1 5.6298 0.6535 -6.2195 36 1 5.0801 -1.0827 -7.9859 37 1 4.4582 0.2479 -9.1012 38 1 1.6222 -1.7217 1.3607 39 1 1.9791 1.2025 2.3411 40 1 1.1511 -0.1685 3.1988 41 1 3.2595 -1.3859 3.4799 42 1 4.0018 0.2679 3.3653 43 1 4.0634 -1.6137 1.1758 44 1 4.0311 0.1843 0.9157 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323106080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:03 Heat of formation + Delta-G solvation = -40.010745 kcal Electronic energy + Delta-G solvation = -23698.034798 eV Core-core repulsion = 20230.406452 eV Total energy + Delta-G solvation = -3467.628346 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47721 -39.28938 -38.00910 -36.70852 -35.07082 -33.33429 -31.96952 -30.82801 -27.09821 -26.23694 -25.62302 -25.42878 -23.64667 -21.36762 -21.06978 -20.26353 -19.65907 -19.32515 -18.00964 -16.72901 -16.15548 -15.92121 -15.50806 -15.29827 -14.97712 -14.67940 -14.38332 -14.06058 -13.82417 -13.30483 -13.10059 -12.83235 -12.71371 -12.68396 -12.33473 -12.08900 -11.87565 -11.62145 -11.50128 -11.23632 -10.99363 -10.94579 -10.82149 -10.64380 -10.52502 -10.50372 -10.24873 -9.60985 -9.22025 -9.14165 -9.08624 -8.52985 -8.38153 -8.17695 -6.08610 -4.18256 1.81562 2.69766 3.26927 3.34791 3.38857 3.62136 3.99628 4.29451 4.33341 4.36149 4.43867 4.58981 4.90110 4.96341 5.02988 5.19014 5.21623 5.34814 5.42167 5.43277 5.47421 5.57041 5.62545 5.69970 5.78444 5.92864 5.96352 6.06173 6.19668 6.28785 6.37760 6.40291 6.48056 6.67099 6.75444 7.01196 7.08584 7.27153 7.34002 7.50474 7.81305 7.89584 8.17868 8.31859 8.53959 8.83933 9.49438 10.98427 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.003368 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.289730 B = 8310.965288 C = 9000.320103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.150 3.850 3 H 0.090 0.910 4 N -0.701 5.701 5 C 0.509 3.491 6 O -0.520 6.520 7 C 0.494 3.506 8 O -0.542 6.542 9 N -0.667 5.667 10 C 0.159 3.841 11 C 0.021 3.979 12 C -0.501 4.501 13 H 0.062 0.938 14 C 0.073 3.927 15 N -0.876 5.876 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.210 4.210 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.136 4.136 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.410 0.590 30 H 0.413 0.587 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.262 0.738 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -0.836 20.299 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.109 0.891 4 N -0.354 5.354 5 C 0.290 3.710 6 O -0.395 6.395 7 C 0.274 3.726 8 O -0.421 6.421 9 N -0.316 5.316 10 C 0.037 3.963 11 C 0.021 3.979 12 C -0.538 4.538 13 H 0.080 0.920 14 C -0.131 4.131 15 N -0.512 5.512 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.247 4.247 21 C -0.178 4.178 22 C -0.140 4.140 23 C -0.167 4.167 24 C -0.180 4.180 25 C -0.173 4.173 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.246 0.754 30 H 0.250 0.750 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.029 -0.986 20.129 20.180 hybrid contribution -0.853 0.395 -0.460 1.047 sum 0.175 -0.591 19.669 19.679 Atomic orbital electron populations 1.22167 0.94980 1.02250 1.02797 1.21071 0.94285 0.97216 0.82843 0.89148 1.45798 1.66048 1.14884 1.08702 1.20484 0.78753 0.86991 0.84775 1.90748 1.48566 1.15459 1.84712 1.19976 0.80465 0.87401 0.84780 1.90706 1.52341 1.14490 1.84549 1.45895 1.64524 1.12298 1.08904 1.21206 0.99039 0.94443 0.81628 1.19028 0.88424 0.96109 0.94382 1.20389 1.08871 1.01978 1.22595 0.92009 1.24987 0.97490 0.94650 0.95937 1.69984 1.39064 1.19754 1.22376 0.86615 0.82909 0.79824 0.78885 1.20645 1.21168 1.19622 1.23034 1.01418 0.97919 1.02355 1.22476 1.03268 0.96317 0.95699 1.22889 0.96967 1.00123 0.94005 1.22873 0.97754 0.99816 0.96208 1.22818 0.97402 1.01190 0.96632 1.22921 0.95488 1.02612 0.96322 0.91510 0.91800 0.92350 0.75380 0.75027 0.90835 0.93432 0.92858 0.90221 0.91656 0.91742 0.89395 0.88567 0.89763 0.91224 0.90203 0.91389 0.91242 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.42 37.16 0.35 -1.28 16 2 C 0.15 1.55 2.28 -67.93 -0.15 1.40 16 3 H 0.09 1.05 7.49 -51.93 -0.39 0.66 16 4 N -0.70 -8.84 4.93 -54.23 -0.27 -9.11 16 5 C 0.51 8.37 7.85 -11.58 -0.09 8.28 16 6 O -0.52 -9.59 16.16 5.50 0.09 -9.50 16 7 C 0.49 9.34 7.88 -11.58 -0.09 9.25 16 8 O -0.54 -11.03 16.47 5.50 0.09 -10.94 16 9 N -0.67 -13.46 5.46 -60.73 -0.33 -13.80 16 10 C 0.16 3.56 5.53 -4.04 -0.02 3.54 16 11 C 0.02 0.50 1.47 -155.66 -0.23 0.27 16 12 C -0.50 -13.04 8.59 -34.44 -0.30 -13.34 16 13 H 0.06 1.61 7.82 -52.48 -0.41 1.19 16 14 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 15 N -0.88 -24.14 12.65 55.43 0.70 -23.44 16 16 Si 0.89 20.84 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 20 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 21 C -0.14 -3.17 9.14 -26.69 -0.24 -3.41 16 22 C -0.12 -0.94 3.18 -89.80 -0.29 -1.23 16 23 C -0.13 -0.86 7.57 -25.92 -0.20 -1.06 16 24 C -0.14 -0.94 8.08 -25.92 -0.21 -1.15 16 25 C -0.14 -1.08 7.51 -25.92 -0.19 -1.27 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.41 4.76 8.09 -40.82 -0.33 4.43 16 30 H 0.41 8.29 7.84 -40.82 -0.32 7.97 16 31 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 32 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 34 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.57 8.03 -51.93 -0.42 0.16 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 44 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -28.92 370.00 -8.53 -37.45 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -7.34 Total: 10.74 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.03 Total: -2.80 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.10 Total: -46.34 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: 0.18 Total: -20.43 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.92 -8.53 -37.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323106080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.563 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds