Wall clock time and date at job start Tue Mar 31 2020 07:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47156 * 2 1 4 4 N 1.46500 * 109.47390 * 239.99298 * 2 1 3 5 5 C 1.34782 * 119.99862 * 85.00073 * 4 2 1 6 6 O 1.21345 * 119.99870 * 0.02562 * 5 4 2 7 7 C 1.49447 * 119.99773 * 180.02562 * 5 4 2 8 8 O 1.21347 * 120.00436 * 5.09333 * 7 5 4 9 9 N 1.34784 * 119.99725 * 185.09006 * 7 5 4 10 10 C 1.46499 * 119.99673 * 185.04007 * 9 7 5 11 11 C 1.53004 * 109.46515 * 184.77991 * 10 9 7 12 12 C 1.50699 * 115.54970 * 294.81164 * 11 10 9 13 13 H 1.08006 * 119.99747 * 95.20454 * 12 11 10 14 14 C 1.37882 * 120.00306 * 274.92941 * 12 11 10 15 15 N 1.31511 * 120.00039 * 355.41933 * 14 12 11 16 16 Si 1.86799 * 119.99919 * 175.41893 * 14 12 11 17 17 H 1.48498 * 109.47309 * 90.00203 * 16 14 12 18 18 H 1.48504 * 109.47121 * 210.00289 * 16 14 12 19 19 H 1.48503 * 109.47246 * 329.99719 * 16 14 12 20 20 C 1.52999 * 117.50036 * 80.48949 * 11 10 9 21 21 C 1.53004 * 117.49737 * 149.15233 * 11 10 9 22 22 C 1.53008 * 109.47119 * 119.99559 * 2 1 3 23 23 C 1.53784 * 113.60961 * 282.52487 * 22 2 1 24 24 C 1.53783 * 87.07785 * 220.01485 * 23 22 2 25 25 C 1.53779 * 113.61523 * 185.02958 * 22 2 1 26 26 H 1.09000 * 109.47200 * 304.96787 * 1 2 3 27 27 H 1.08998 * 109.46540 * 64.96592 * 1 2 3 28 28 H 1.08995 * 109.46898 * 184.96100 * 1 2 3 29 29 H 0.97003 * 120.00156 * 265.00277 * 4 2 1 30 30 H 0.96996 * 119.99636 * 5.03674 * 9 7 5 31 31 H 1.09000 * 109.47234 * 64.78378 * 10 9 7 32 32 H 1.08998 * 109.47182 * 304.77485 * 10 9 7 33 33 H 0.96994 * 120.00346 * 184.99812 * 15 14 12 34 34 H 1.08999 * 117.49333 * 215.00262 * 20 11 10 35 35 H 1.08999 * 117.50051 * 0.02562 * 20 11 10 36 36 H 1.09004 * 117.49670 * 359.96813 * 21 11 10 37 37 H 1.08993 * 117.49945 * 144.97391 * 21 11 10 38 38 H 1.08995 * 112.84847 * 53.82761 * 22 2 1 39 39 H 1.08994 * 113.61867 * 334.56719 * 23 22 2 40 40 H 1.08997 * 113.61304 * 105.47532 * 23 22 2 41 41 H 1.09002 * 113.61768 * 270.88781 * 24 23 22 42 42 H 1.09006 * 113.68979 * 139.99310 * 24 23 22 43 43 H 1.09008 * 113.60831 * 254.52832 * 25 22 2 44 44 H 1.08997 * 113.61298 * 25.42703 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0185 -2.3571 6 8 1.8590 1.1590 -2.4116 7 6 2.6448 -0.7233 -3.5774 8 8 2.8451 -1.9197 -3.5478 9 7 2.8713 -0.0299 -4.7108 10 6 3.2526 -0.7351 -5.9370 11 6 3.5641 0.2837 -7.0352 12 6 2.3982 1.1205 -7.4951 13 1 2.2327 2.0980 -7.0664 14 6 1.5461 0.6408 -8.4672 15 7 1.8011 -0.5066 -9.0571 16 14 0.0295 1.6205 -8.9461 17 1 0.3696 2.5494 -10.0537 18 1 -1.0403 0.6912 -9.3902 19 1 -0.4465 2.3998 -7.7750 20 6 4.9438 0.9447 -7.0149 21 6 4.6121 -0.1028 -8.0808 22 6 2.0400 -0.7212 1.2494 23 6 1.9572 0.1289 2.5282 24 6 3.3259 -0.4576 2.9124 25 6 3.5687 -0.6707 1.4089 26 1 -0.3633 0.5890 0.8421 27 1 -0.3632 0.4349 -0.9311 28 1 -0.3633 -1.0238 0.0889 29 1 2.2491 -1.6319 -1.1524 30 1 2.7816 0.9359 -4.7146 31 1 2.4313 -1.3757 -6.2581 32 1 4.1358 -1.3447 -5.7459 33 1 1.2432 -0.8094 -9.7904 34 1 5.0081 1.9850 -7.3342 35 1 5.6298 0.6535 -6.2195 36 1 5.0801 -1.0827 -7.9859 37 1 4.4582 0.2479 -9.1012 38 1 1.6222 -1.7217 1.3607 39 1 1.9791 1.2025 2.3411 40 1 1.1511 -0.1685 3.1988 41 1 3.2595 -1.3859 3.4799 42 1 4.0018 0.2679 3.3653 43 1 4.0634 -1.6137 1.1758 44 1 4.0311 0.1843 0.9157 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323106080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:02 Heat of formation + Delta-G solvation = -57.895087 kcal Electronic energy + Delta-G solvation = -23698.810321 eV Core-core repulsion = 20230.406452 eV Total energy + Delta-G solvation = -3468.403869 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75870 -40.29343 -39.29972 -38.46473 -36.17559 -34.93300 -33.97065 -31.81720 -28.75029 -27.46039 -26.90209 -26.22232 -24.97483 -22.95208 -22.21172 -21.45605 -21.31526 -20.35199 -19.41123 -18.11421 -17.86591 -17.10904 -16.85835 -16.55319 -16.34141 -16.09197 -15.72381 -15.40901 -15.20111 -14.80763 -14.44751 -14.17412 -13.70436 -13.55453 -13.48506 -13.30233 -13.13646 -12.96697 -12.83648 -12.77730 -12.66829 -12.38970 -12.21817 -12.02324 -11.45505 -11.42559 -11.27710 -11.14062 -10.98799 -10.70363 -10.46333 -10.23841 -10.12532 -9.96569 -8.11555 -6.25280 0.38519 1.38675 1.40008 1.43686 1.51947 2.17663 2.40987 2.70240 3.15940 3.40914 3.57890 3.65061 3.69929 3.81649 4.01870 4.18997 4.24889 4.29899 4.40342 4.50582 4.61591 4.67784 4.70573 4.85670 4.89582 4.90196 4.91209 4.98947 5.01342 5.10807 5.13508 5.24693 5.26751 5.27665 5.34149 5.40468 5.52089 5.63085 5.67729 5.76277 6.03052 6.34979 6.47180 6.79021 6.82766 7.00619 7.44451 8.95033 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.003368 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.289730 B = 8310.965288 C = 9000.320103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.078 0.922 4 N -0.681 5.681 5 C 0.514 3.486 6 O -0.543 6.543 7 C 0.495 3.505 8 O -0.556 6.556 9 N -0.670 5.670 10 C 0.175 3.825 11 C -0.002 4.002 12 C -0.509 4.509 13 H 0.057 0.943 14 C 0.029 3.971 15 N -0.903 5.903 16 Si 0.945 3.055 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.271 1.271 20 C -0.181 4.181 21 C -0.145 4.145 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.137 4.137 25 C -0.143 4.143 26 H 0.087 0.913 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.417 0.583 30 H 0.414 0.586 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.260 0.740 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -0.712 22.482 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 H 0.096 0.904 4 N -0.334 5.334 5 C 0.294 3.706 6 O -0.420 6.420 7 C 0.275 3.725 8 O -0.436 6.436 9 N -0.320 5.320 10 C 0.052 3.948 11 C -0.003 4.003 12 C -0.547 4.547 13 H 0.075 0.925 14 C -0.173 4.173 15 N -0.540 5.540 16 Si 0.772 3.228 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.195 1.195 20 C -0.218 4.218 21 C -0.183 4.183 22 C -0.134 4.134 23 C -0.162 4.162 24 C -0.174 4.174 25 C -0.181 4.181 26 H 0.106 0.894 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.254 0.746 30 H 0.251 0.749 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.963 -0.870 22.353 22.391 hybrid contribution -0.806 0.333 -1.073 1.383 sum 0.157 -0.537 21.280 21.288 Atomic orbital electron populations 1.22145 0.94311 1.03147 1.02239 1.21301 0.94750 0.96804 0.82724 0.90385 1.45823 1.64264 1.15102 1.08177 1.20001 0.79068 0.86601 0.84907 1.90744 1.50096 1.16224 1.84974 1.20417 0.79585 0.87240 0.85219 1.90690 1.52782 1.15196 1.84958 1.45812 1.65130 1.12252 1.08781 1.20827 0.97949 0.93846 0.82221 1.19063 0.88907 0.97060 0.95292 1.20659 1.09738 1.02018 1.22266 0.92470 1.25632 0.99789 0.95560 0.96278 1.70080 1.40041 1.20998 1.22918 0.85747 0.79946 0.78592 0.78557 1.20043 1.21337 1.19523 1.23023 0.99619 0.97554 1.01634 1.22396 1.03579 0.97554 0.94795 1.22912 0.96757 1.00753 0.92987 1.22874 0.98344 0.99502 0.95469 1.22811 0.97261 1.01787 0.95582 1.22943 0.95467 1.02082 0.97575 0.89384 0.94550 0.91194 0.74567 0.74933 0.94209 0.92658 0.93044 0.89921 0.89205 0.90623 0.91590 0.87184 0.90015 0.89773 0.89076 0.91133 0.91206 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.42 71.98 0.68 -2.25 16 2 C 0.15 2.83 2.28 44.99 0.10 2.93 16 3 H 0.08 1.75 7.49 -2.39 -0.02 1.73 16 4 N -0.68 -16.46 4.93 -443.86 -2.19 -18.65 16 5 C 0.51 16.69 7.85 87.27 0.69 17.37 16 6 O -0.54 -19.97 16.16 -3.23 -0.05 -20.02 16 7 C 0.49 18.60 7.88 87.27 0.69 19.29 16 8 O -0.56 -22.45 16.47 -3.24 -0.05 -22.50 16 9 N -0.67 -27.10 5.46 -464.40 -2.54 -29.64 16 10 C 0.17 7.86 5.53 86.38 0.48 8.34 16 11 C 0.00 -0.12 1.47 -52.93 -0.08 -0.19 16 12 C -0.51 -26.66 8.59 25.60 0.22 -26.44 16 13 H 0.06 2.98 7.82 -2.91 -0.02 2.95 16 14 C 0.03 1.53 5.43 84.66 0.46 1.99 16 15 N -0.90 -50.58 12.65 21.45 0.27 -50.31 16 16 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 C -0.18 -7.32 9.96 30.62 0.30 -7.02 16 21 C -0.15 -6.56 9.14 30.62 0.28 -6.28 16 22 C -0.12 -1.52 3.18 -10.26 -0.03 -1.56 16 23 C -0.12 -1.32 7.57 31.12 0.24 -1.09 16 24 C -0.14 -1.46 8.08 31.12 0.25 -1.21 16 25 C -0.14 -2.02 7.51 31.12 0.23 -1.79 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.42 9.08 8.09 -92.71 -0.75 8.33 16 30 H 0.41 16.64 7.84 -92.71 -0.73 15.92 16 31 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 33 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 34 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 0.93 8.03 -2.39 -0.02 0.92 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.07 1.17 8.10 -2.39 -0.02 1.16 16 Total: -1.00 -61.75 370.00 1.49 -60.26 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.48 Total: 33.63 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 4.51 Total: 2.11 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -4.46 Total: -98.59 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.11 Total: -42.52 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -61.75 1.49 -60.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323106080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.364 kcal (2) G-P(sol) polarization free energy of solvation -61.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds