Wall clock time and date at job start Tue Mar 31 2020 07:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47115 * 2 1 4 4 N 1.46501 * 109.47740 * 120.00467 * 2 1 3 5 5 C 1.34769 * 120.00011 * 275.00046 * 4 2 1 6 6 O 1.21358 * 119.99800 * 359.97438 * 5 4 2 7 7 C 1.49453 * 120.00473 * 179.97438 * 5 4 2 8 8 O 1.21351 * 119.99369 * 5.09242 * 7 5 4 9 9 N 1.34769 * 120.00243 * 185.08548 * 7 5 4 10 10 C 1.46497 * 120.00011 * 185.03773 * 9 7 5 11 11 C 1.53005 * 109.47129 * 184.78311 * 10 9 7 12 12 C 1.50703 * 115.54676 * 294.81585 * 11 10 9 13 13 H 1.07998 * 119.99578 * 95.20301 * 12 11 10 14 14 C 1.37876 * 120.00032 * 274.92215 * 12 11 10 15 15 N 1.31513 * 120.00087 * 355.42383 * 14 12 11 16 16 Si 1.86797 * 119.99764 * 175.41970 * 14 12 11 17 17 H 1.48506 * 109.47089 * 90.00605 * 16 14 12 18 18 H 1.48500 * 109.47109 * 210.00447 * 16 14 12 19 19 H 1.48505 * 109.47313 * 330.00182 * 16 14 12 20 20 C 1.52992 * 117.50017 * 80.49188 * 11 10 9 21 21 C 1.52998 * 117.49741 * 149.15238 * 11 10 9 22 22 C 1.53004 * 109.46855 * 240.00522 * 2 1 3 23 23 C 1.53781 * 113.61671 * 159.13634 * 22 2 1 24 24 C 1.53956 * 87.01793 * 220.04747 * 23 22 2 25 25 C 1.53778 * 113.61638 * 61.52365 * 22 2 1 26 26 H 1.09005 * 109.46903 * 299.99618 * 1 2 3 27 27 H 1.08993 * 109.47691 * 59.99448 * 1 2 3 28 28 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 29 29 H 0.97004 * 120.00150 * 94.99368 * 4 2 1 30 30 H 0.97000 * 120.00088 * 5.04363 * 9 7 5 31 31 H 1.09004 * 109.47290 * 64.78043 * 10 9 7 32 32 H 1.09002 * 109.47245 * 304.78204 * 10 9 7 33 33 H 0.97005 * 120.00163 * 184.99518 * 15 14 12 34 34 H 1.09001 * 117.49686 * 215.00072 * 20 11 10 35 35 H 1.09004 * 117.49963 * 0.02562 * 20 11 10 36 36 H 1.09001 * 117.50544 * 359.96959 * 21 11 10 37 37 H 1.09001 * 117.50141 * 144.97625 * 21 11 10 38 38 H 1.09007 * 112.84974 * 290.33183 * 22 2 1 39 39 H 1.08994 * 113.60984 * 334.56171 * 23 22 2 40 40 H 1.08994 * 113.61255 * 105.47178 * 23 22 2 41 41 H 1.09005 * 113.53721 * 270.81130 * 24 23 22 42 42 H 1.09001 * 113.74477 * 139.94715 * 24 23 22 43 43 H 1.08998 * 113.61576 * 254.53055 * 25 22 2 44 44 H 1.09001 * 113.61283 * 25.43777 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8590 1.1591 2.4115 7 6 2.6450 -0.7231 3.5774 8 8 3.0205 -1.8746 3.5023 9 7 2.6769 -0.0797 4.7611 10 6 3.2665 -0.7313 5.9333 11 6 3.0698 0.1570 7.1635 12 6 3.7929 1.4789 7.1329 13 1 3.2802 2.3671 6.7943 14 6 5.1071 1.5554 7.5426 15 7 5.7023 0.4954 8.0444 16 14 6.0424 3.1647 7.3850 17 1 5.8689 3.9617 8.6260 18 1 7.4850 2.8805 7.1769 19 1 5.5169 3.9313 6.2267 20 6 1.7060 0.1136 7.8554 21 6 2.9224 -0.5364 8.5193 22 6 2.0399 -0.7212 -1.2494 23 6 3.4866 -0.3576 -1.6232 24 6 3.0231 -0.3617 -3.0914 25 6 1.6118 -0.0508 -2.5655 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 2.2491 -1.6319 1.1525 30 1 2.3095 0.8148 4.8371 31 1 4.3320 -0.8876 5.7647 32 1 2.7798 -1.6926 6.0978 33 1 6.6022 0.5669 8.3993 34 1 1.3316 1.0412 8.2886 35 1 0.9489 -0.5482 7.4346 36 1 2.9651 -1.6255 8.5350 37 1 3.3487 -0.0367 9.3892 38 1 1.8519 -1.7946 -1.2248 39 1 3.7961 0.6245 -1.2660 40 1 4.2078 -1.1407 -1.3899 41 1 3.1052 -1.3372 -3.5710 42 1 3.4530 0.4416 -3.6897 43 1 0.8219 -0.5867 -3.0917 44 1 1.4080 1.0153 -2.4663 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323106081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:05 Heat of formation + Delta-G solvation = -39.921911 kcal Electronic energy + Delta-G solvation = -23670.472447 eV Core-core repulsion = 20202.847953 eV Total energy + Delta-G solvation = -3467.624494 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46678 -39.29235 -38.01371 -36.70906 -35.07724 -33.33516 -31.96892 -30.80407 -27.11166 -26.32012 -25.52987 -25.43020 -23.65532 -21.37640 -21.07160 -20.31646 -19.64548 -19.26653 -18.00110 -16.75838 -16.15678 -15.89103 -15.48107 -15.29335 -14.96024 -14.69194 -14.34873 -14.15098 -13.72290 -13.41333 -13.14919 -12.84335 -12.74288 -12.67954 -12.35035 -11.95798 -11.88131 -11.62601 -11.47823 -11.24862 -10.99313 -10.94528 -10.79276 -10.63552 -10.53936 -10.52447 -10.24797 -9.61033 -9.22323 -9.13599 -9.08495 -8.52950 -8.38105 -8.17757 -6.08553 -4.18198 1.81439 2.70277 3.26967 3.34830 3.38885 3.62239 4.00181 4.28848 4.34625 4.36291 4.43979 4.58583 4.89979 4.95748 5.06183 5.19115 5.21637 5.34840 5.41044 5.43081 5.47748 5.56148 5.63024 5.73031 5.77279 5.93540 5.96350 6.04309 6.17949 6.28789 6.38906 6.40296 6.48049 6.67100 6.75447 7.01092 7.08600 7.26824 7.33906 7.50423 7.81336 7.89406 8.17776 8.31880 8.53882 8.83972 9.49501 10.98449 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.003416 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.520720 B = 8194.810005 C = 8845.202288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 H 0.091 0.909 4 N -0.701 5.701 5 C 0.509 3.491 6 O -0.520 6.520 7 C 0.494 3.506 8 O -0.542 6.542 9 N -0.667 5.667 10 C 0.159 3.841 11 C 0.021 3.979 12 C -0.501 4.501 13 H 0.062 0.938 14 C 0.073 3.927 15 N -0.876 5.876 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.210 4.210 21 C -0.139 4.139 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.128 4.128 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.410 0.590 30 H 0.414 0.586 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.262 0.738 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 -3.054 -18.114 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.109 0.891 4 N -0.355 5.355 5 C 0.290 3.710 6 O -0.395 6.395 7 C 0.274 3.726 8 O -0.421 6.421 9 N -0.316 5.316 10 C 0.037 3.963 11 C 0.021 3.979 12 C -0.538 4.538 13 H 0.080 0.920 14 C -0.131 4.131 15 N -0.512 5.512 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.247 4.247 21 C -0.178 4.178 22 C -0.139 4.139 23 C -0.174 4.174 24 C -0.181 4.181 25 C -0.166 4.166 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.246 0.754 30 H 0.250 0.750 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.575 -3.079 -18.072 19.836 hybrid contribution 0.597 0.755 0.098 0.968 sum -6.978 -2.324 -17.973 19.420 Atomic orbital electron populations 1.22159 0.94985 1.02306 1.02686 1.21082 0.94226 0.97335 0.82826 0.89112 1.45821 1.66027 1.14823 1.08815 1.20489 0.78478 0.87087 0.84947 1.90751 1.48245 1.15457 1.85032 1.19973 0.81043 0.86785 0.84817 1.90707 1.49008 1.16700 1.85690 1.45891 1.57079 1.20415 1.08221 1.21207 0.97821 0.93751 0.83538 1.19028 0.93742 0.96247 0.88928 1.20386 0.95701 0.92223 1.45521 0.92009 1.24985 0.97297 0.96242 0.94537 1.69988 1.14116 1.28363 1.38702 0.86616 0.79210 0.83756 0.78654 1.20638 1.21168 1.19628 1.23033 0.91831 1.01761 1.08109 1.22473 0.99869 0.96739 0.98672 1.22865 0.97116 1.00400 0.93517 1.22999 0.96019 1.02410 0.96012 1.22847 0.96702 1.01913 0.96604 1.22868 0.97200 1.01117 0.95439 0.91881 0.91426 0.92357 0.75382 0.75022 0.90831 0.93437 0.92862 0.90219 0.91657 0.91746 0.89393 0.88609 0.89849 0.91218 0.90223 0.91374 0.91224 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.30 37.16 0.35 -1.19 16 2 C 0.15 1.55 2.37 -67.93 -0.16 1.39 16 3 H 0.09 1.08 7.41 -51.93 -0.38 0.70 16 4 N -0.70 -8.87 5.07 -54.23 -0.27 -9.15 16 5 C 0.51 8.39 7.85 -11.59 -0.09 8.30 16 6 O -0.52 -9.60 16.16 5.49 0.09 -9.52 16 7 C 0.49 9.36 7.88 -11.59 -0.09 9.26 16 8 O -0.54 -11.04 16.47 5.50 0.09 -10.95 16 9 N -0.67 -13.48 5.46 -60.73 -0.33 -13.81 16 10 C 0.16 3.56 5.53 -4.04 -0.02 3.54 16 11 C 0.02 0.50 1.47 -155.66 -0.23 0.27 16 12 C -0.50 -13.04 8.59 -34.44 -0.30 -13.33 16 13 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 14 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 15 N -0.88 -24.12 12.65 55.43 0.70 -23.42 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.21 -4.40 9.96 -26.70 -0.27 -4.66 16 21 C -0.14 -3.16 9.14 -26.70 -0.24 -3.41 16 22 C -0.12 -0.96 3.29 -89.81 -0.30 -1.25 16 23 C -0.14 -1.15 7.65 -25.83 -0.20 -1.35 16 24 C -0.14 -0.98 8.09 -25.83 -0.21 -1.19 16 25 C -0.13 -0.86 6.75 -25.92 -0.17 -1.03 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.52 7.50 -51.93 -0.39 0.13 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.41 4.75 8.08 -40.82 -0.33 4.42 16 30 H 0.41 8.30 7.84 -40.82 -0.32 7.98 16 31 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 32 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 34 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 38 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.08 0.78 7.99 -51.93 -0.41 0.36 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -28.95 368.79 -8.52 -37.47 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -7.30 Total: 10.82 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.03 Total: -2.80 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.09 Total: -46.38 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.18 Total: -20.47 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.95 -8.52 -37.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323106081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.453 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds