Wall clock time and date at job start Tue Mar 31 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.87899 * 2 1 4 4 C 1.54326 * 110.01483 * 238.90012 * 2 1 3 5 5 C 1.55154 * 102.94714 * 262.70385 * 4 2 1 6 6 C 1.55130 * 101.48437 * 324.33120 * 5 4 2 7 7 H 1.09001 * 110.49564 * 278.45413 * 6 5 4 8 8 C 1.52998 * 110.34487 * 156.05392 * 6 5 4 9 9 N 1.47027 * 109.88590 * 121.01682 * 2 1 3 10 10 C 1.34778 * 125.64364 * 300.60044 * 9 2 1 11 11 O 1.21350 * 119.99897 * 174.08168 * 10 9 2 12 12 C 1.49450 * 120.00273 * 354.07578 * 10 9 2 13 13 O 1.21349 * 119.99834 * 353.61865 * 12 10 9 14 14 N 1.34770 * 119.99998 * 173.62368 * 12 10 9 15 15 C 1.46505 * 119.99910 * 175.24317 * 14 12 10 16 16 C 1.53001 * 109.47266 * 184.72059 * 15 14 12 17 17 C 1.50697 * 115.54815 * 281.63291 * 16 15 14 18 18 H 1.07997 * 120.00517 * 142.92655 * 17 16 15 19 19 C 1.37882 * 120.00196 * 322.91860 * 17 16 15 20 20 N 1.31519 * 119.99489 * 341.90443 * 19 17 16 21 21 Si 1.86793 * 120.00385 * 161.89871 * 19 17 16 22 22 H 1.48500 * 109.47109 * 90.00107 * 21 19 17 23 23 H 1.48501 * 109.47185 * 210.00234 * 21 19 17 24 24 H 1.48503 * 109.47270 * 330.00379 * 21 19 17 25 25 C 1.52992 * 117.49973 * 135.92215 * 16 15 14 26 26 C 1.53000 * 60.00217 * 252.51026 * 25 16 15 27 27 H 1.08997 * 109.47132 * 295.87306 * 1 2 3 28 28 H 1.09003 * 109.47323 * 55.87926 * 1 2 3 29 29 H 1.08998 * 109.47027 * 175.87244 * 1 2 3 30 30 H 1.09004 * 110.71612 * 21.06523 * 4 2 1 31 31 H 1.09001 * 110.71988 * 144.33800 * 4 2 1 32 32 H 1.08998 * 111.00322 * 82.56579 * 5 4 2 33 33 H 1.08993 * 111.00848 * 206.38310 * 5 4 2 34 34 H 1.08999 * 109.47288 * 294.38290 * 8 6 5 35 35 H 1.09005 * 109.46955 * 54.38246 * 8 6 5 36 36 H 1.08999 * 109.47300 * 174.37893 * 8 6 5 37 37 H 0.97002 * 120.00352 * 354.96847 * 14 12 10 38 38 H 1.09002 * 109.47140 * 304.71443 * 15 14 12 39 39 H 1.08998 * 109.46878 * 64.71775 * 15 14 12 40 40 H 0.97006 * 119.99645 * 185.01291 * 20 19 17 41 41 H 1.09001 * 117.50179 * 359.97438 * 25 16 15 42 42 H 1.09002 * 117.50003 * 145.02422 * 25 16 15 43 43 H 1.09004 * 117.49958 * 252.51449 * 26 25 16 44 44 H 1.09002 * 117.50175 * 107.48906 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2416 5 6 2.3576 -2.1680 -0.6903 6 6 2.8644 -1.8433 0.7394 7 1 3.9148 -1.5533 0.7153 8 6 2.6643 -3.0480 1.6611 9 7 2.0301 -0.7124 1.1849 10 6 1.7729 -0.3828 2.4662 11 8 2.1500 -1.1047 3.3658 12 6 1.0235 0.8718 2.7791 13 8 0.7477 1.6513 1.8909 14 7 0.6541 1.1375 4.0477 15 6 0.0123 2.4140 4.3717 16 6 -0.1961 2.5107 5.8843 17 6 -1.3675 1.7352 6.4299 18 1 -1.2905 1.2437 7.3884 19 6 -2.5377 1.6534 5.7053 20 7 -2.7738 2.5129 4.7383 21 14 -3.7876 0.3217 6.0971 22 1 -4.7447 0.8251 7.1149 23 1 -4.5258 -0.0434 4.8613 24 1 -3.0862 -0.8753 6.6266 25 6 0.1502 3.8380 6.5617 26 6 1.0512 2.6181 6.7638 27 1 -0.3633 0.4484 0.9246 28 1 -0.3634 0.5765 -0.8508 29 1 -0.3633 -1.0250 -0.0740 30 1 1.2962 -0.7905 -2.0200 31 1 2.9684 -0.2808 -1.6162 32 1 1.4522 -2.7741 -0.6592 33 1 3.1340 -2.6592 -1.2766 34 1 1.5981 -3.2359 1.7872 35 1 3.1382 -3.9252 1.2205 36 1 3.1142 -2.8413 2.6322 37 1 0.8095 0.4819 4.7455 38 1 0.6478 3.2349 4.0393 39 1 -0.9522 2.4740 3.8674 40 1 -3.6271 2.5016 4.2770 41 1 0.5269 4.6424 5.9299 42 1 -0.4694 4.1508 7.4022 43 1 1.0244 2.1283 7.7373 44 1 2.0203 2.6199 6.2648 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324174623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:21 Heat of formation + Delta-G solvation = -37.612232 kcal Electronic energy + Delta-G solvation = -24924.832977 eV Core-core repulsion = 21457.308638 eV Total energy + Delta-G solvation = -3467.524339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68849 -38.66127 -37.44127 -36.74616 -33.34043 -32.51642 -32.27982 -31.59498 -28.29993 -26.83452 -25.57299 -24.20277 -24.00163 -21.53010 -21.13216 -20.68825 -19.45751 -18.87049 -17.29062 -16.84145 -16.11227 -15.63922 -15.45405 -14.79719 -14.68600 -14.44843 -13.99511 -13.94101 -13.49315 -13.35205 -13.16892 -12.77002 -12.64091 -12.32944 -12.27534 -11.83388 -11.73784 -11.71242 -11.48663 -11.11588 -11.00562 -10.87249 -10.85214 -10.54345 -10.49415 -10.45572 -10.31522 -9.59559 -9.27893 -8.93173 -8.84194 -8.64856 -8.36340 -7.98104 -6.16419 -4.17237 1.91321 2.66892 3.21908 3.31328 3.35983 3.71264 3.91011 4.29708 4.44555 4.48587 4.74426 4.85661 5.06003 5.08574 5.15445 5.29643 5.46411 5.47600 5.54940 5.58582 5.63030 5.73684 5.90091 5.93487 5.94981 6.07343 6.19572 6.24051 6.26864 6.43544 6.45896 6.56071 6.62468 6.63860 6.84129 6.99219 7.17065 7.28974 7.43658 7.51369 7.89250 7.90613 8.27312 8.30986 8.67013 8.78809 9.41106 10.85055 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.004688 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.568816 B = 5971.411583 C = 6297.575505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.135 3.865 3 H 0.090 0.910 4 C -0.131 4.131 5 C -0.129 4.129 6 C 0.132 3.868 7 H 0.077 0.923 8 C -0.157 4.157 9 N -0.591 5.591 10 C 0.524 3.476 11 O -0.522 6.522 12 C 0.491 3.509 13 O -0.527 6.527 14 N -0.667 5.667 15 C 0.140 3.860 16 C 0.036 3.964 17 C -0.497 4.497 18 H 0.064 0.936 19 C 0.074 3.926 20 N -0.869 5.869 21 Si 0.888 3.112 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.271 1.271 25 C -0.190 4.190 26 C -0.208 4.208 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.409 0.591 38 H 0.039 0.961 39 H 0.126 0.874 40 H 0.265 0.735 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.172 -7.286 -11.355 16.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.032 3.968 3 H 0.107 0.893 4 C -0.169 4.169 5 C -0.167 4.167 6 C 0.029 3.971 7 H 0.095 0.905 8 C -0.215 4.215 9 N -0.327 5.327 10 C 0.308 3.692 11 O -0.397 6.397 12 C 0.271 3.729 13 O -0.406 6.406 14 N -0.317 5.317 15 C 0.019 3.981 16 C 0.036 3.964 17 C -0.533 4.533 18 H 0.082 0.918 19 C -0.130 4.130 20 N -0.506 5.506 21 Si 0.715 3.285 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.195 1.195 25 C -0.228 4.228 26 C -0.246 4.246 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.244 0.756 38 H 0.057 0.943 39 H 0.144 0.856 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.032 -7.054 -11.570 16.285 hybrid contribution -0.609 -0.816 0.548 1.156 sum 8.424 -7.871 -11.022 15.950 Atomic orbital electron populations 1.22366 0.94194 1.01155 1.04783 1.21695 0.95307 0.96545 0.83214 0.89253 1.22762 1.01785 0.95360 0.97018 1.22891 1.01971 0.97164 0.94715 1.22047 0.94444 0.86725 0.93887 0.90519 1.22095 1.02744 0.95898 1.00725 1.48469 1.49417 1.29821 1.05008 1.20248 0.80700 0.86573 0.81711 1.90701 1.52268 1.51619 1.45141 1.19812 0.81822 0.86937 0.84358 1.90671 1.55255 1.49353 1.45349 1.45966 1.56758 1.20908 1.08034 1.21515 0.99087 0.80754 0.96781 1.19135 0.92770 0.95655 0.88881 1.20487 0.96309 1.31798 1.04756 0.91778 1.24966 0.97979 0.95340 0.94688 1.69787 1.23340 1.33569 1.23864 0.86638 0.81088 0.82789 0.77945 1.20528 1.20960 1.19527 1.22941 1.03832 0.91938 1.04130 1.22891 0.94852 1.04767 1.02085 0.89660 0.91742 0.93497 0.89849 0.90645 0.90423 0.89954 0.92365 0.92274 0.90159 0.75591 0.94260 0.85645 0.92426 0.91518 0.90031 0.90363 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 8.66 37.15 0.32 -2.06 16 2 C 0.14 1.78 2.82 -66.95 -0.19 1.59 16 3 H 0.09 1.28 7.28 -51.93 -0.38 0.90 16 4 C -0.13 -1.20 6.49 -24.90 -0.16 -1.36 16 5 C -0.13 -1.14 6.51 -24.46 -0.16 -1.29 16 6 C 0.13 1.53 3.80 -66.30 -0.25 1.27 16 7 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 8 C -0.16 -1.88 8.28 37.16 0.31 -1.57 16 9 N -0.59 -8.71 3.00 -155.96 -0.47 -9.18 16 10 C 0.52 9.42 7.52 -11.58 -0.09 9.34 16 11 O -0.52 -10.02 14.23 5.50 0.08 -9.94 16 12 C 0.49 9.83 7.05 -11.59 -0.08 9.75 16 13 O -0.53 -11.01 12.11 5.50 0.07 -10.95 16 14 N -0.67 -14.15 5.52 -60.73 -0.34 -14.48 16 15 C 0.14 3.27 5.31 -4.04 -0.02 3.25 16 16 C 0.04 0.86 1.71 -155.66 -0.27 0.60 16 17 C -0.50 -12.91 8.99 -34.44 -0.31 -13.22 16 18 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 19 C 0.07 1.94 5.12 -17.82 -0.09 1.85 16 20 N -0.87 -23.48 10.99 55.43 0.61 -22.88 16 21 Si 0.89 20.48 29.58 -169.99 -5.03 15.45 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C -0.19 -4.19 9.88 -26.73 -0.26 -4.45 16 26 C -0.21 -4.37 9.94 -26.73 -0.27 -4.63 16 27 H 0.08 1.54 4.90 -51.93 -0.25 1.29 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.66 7.83 -51.93 -0.41 0.26 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.13 6.49 -51.93 -0.34 0.80 16 37 H 0.41 8.56 7.99 -40.82 -0.33 8.23 16 38 H 0.04 0.90 7.97 -51.93 -0.41 0.49 16 39 H 0.13 3.31 5.37 -51.93 -0.28 3.03 16 40 H 0.27 6.89 8.32 -40.82 -0.34 6.55 16 41 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 42 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 43 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -27.99 350.45 -8.33 -36.31 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.01 Total: 11.33 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.52 Total: -0.95 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.19 Total: -46.53 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.14 Total: -20.89 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.99 -8.33 -36.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324174623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.299 kcal (2) G-P(sol) polarization free energy of solvation -27.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds