Wall clock time and date at job start Tue Mar 31 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.87899 * 2 1 4 4 C 1.54326 * 110.01483 * 238.90012 * 2 1 3 5 5 C 1.55154 * 102.94714 * 262.70385 * 4 2 1 6 6 C 1.55130 * 101.48437 * 324.33120 * 5 4 2 7 7 H 1.09001 * 110.49564 * 278.45413 * 6 5 4 8 8 C 1.52998 * 110.34487 * 156.05392 * 6 5 4 9 9 N 1.47027 * 109.88590 * 121.01682 * 2 1 3 10 10 C 1.34778 * 125.64364 * 300.60044 * 9 2 1 11 11 O 1.21350 * 119.99897 * 174.08168 * 10 9 2 12 12 C 1.49450 * 120.00273 * 354.07578 * 10 9 2 13 13 O 1.21349 * 119.99834 * 353.61865 * 12 10 9 14 14 N 1.34770 * 119.99998 * 173.62368 * 12 10 9 15 15 C 1.46505 * 119.99910 * 175.24317 * 14 12 10 16 16 C 1.53001 * 109.47266 * 184.72059 * 15 14 12 17 17 C 1.50697 * 115.54815 * 281.63291 * 16 15 14 18 18 H 1.07997 * 120.00517 * 142.92655 * 17 16 15 19 19 C 1.37882 * 120.00196 * 322.91860 * 17 16 15 20 20 N 1.31519 * 119.99489 * 341.90443 * 19 17 16 21 21 Si 1.86793 * 120.00385 * 161.89871 * 19 17 16 22 22 H 1.48500 * 109.47109 * 90.00107 * 21 19 17 23 23 H 1.48501 * 109.47185 * 210.00234 * 21 19 17 24 24 H 1.48503 * 109.47270 * 330.00379 * 21 19 17 25 25 C 1.52992 * 117.49973 * 135.92215 * 16 15 14 26 26 C 1.53000 * 60.00217 * 252.51026 * 25 16 15 27 27 H 1.08997 * 109.47132 * 295.87306 * 1 2 3 28 28 H 1.09003 * 109.47323 * 55.87926 * 1 2 3 29 29 H 1.08998 * 109.47027 * 175.87244 * 1 2 3 30 30 H 1.09004 * 110.71612 * 21.06523 * 4 2 1 31 31 H 1.09001 * 110.71988 * 144.33800 * 4 2 1 32 32 H 1.08998 * 111.00322 * 82.56579 * 5 4 2 33 33 H 1.08993 * 111.00848 * 206.38310 * 5 4 2 34 34 H 1.08999 * 109.47288 * 294.38290 * 8 6 5 35 35 H 1.09005 * 109.46955 * 54.38246 * 8 6 5 36 36 H 1.08999 * 109.47300 * 174.37893 * 8 6 5 37 37 H 0.97002 * 120.00352 * 354.96847 * 14 12 10 38 38 H 1.09002 * 109.47140 * 304.71443 * 15 14 12 39 39 H 1.08998 * 109.46878 * 64.71775 * 15 14 12 40 40 H 0.97006 * 119.99645 * 185.01291 * 20 19 17 41 41 H 1.09001 * 117.50179 * 359.97438 * 25 16 15 42 42 H 1.09002 * 117.50003 * 145.02422 * 25 16 15 43 43 H 1.09004 * 117.49958 * 252.51449 * 26 25 16 44 44 H 1.09002 * 117.50175 * 107.48906 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2416 5 6 2.3576 -2.1680 -0.6903 6 6 2.8644 -1.8433 0.7394 7 1 3.9148 -1.5533 0.7153 8 6 2.6643 -3.0480 1.6611 9 7 2.0301 -0.7124 1.1849 10 6 1.7729 -0.3828 2.4662 11 8 2.1500 -1.1047 3.3658 12 6 1.0235 0.8718 2.7791 13 8 0.7477 1.6513 1.8909 14 7 0.6541 1.1375 4.0477 15 6 0.0123 2.4140 4.3717 16 6 -0.1961 2.5107 5.8843 17 6 -1.3675 1.7352 6.4299 18 1 -1.2905 1.2437 7.3884 19 6 -2.5377 1.6534 5.7053 20 7 -2.7738 2.5129 4.7383 21 14 -3.7876 0.3217 6.0971 22 1 -4.7447 0.8251 7.1149 23 1 -4.5258 -0.0434 4.8613 24 1 -3.0862 -0.8753 6.6266 25 6 0.1502 3.8380 6.5617 26 6 1.0512 2.6181 6.7638 27 1 -0.3633 0.4484 0.9246 28 1 -0.3634 0.5765 -0.8508 29 1 -0.3633 -1.0250 -0.0740 30 1 1.2962 -0.7905 -2.0200 31 1 2.9684 -0.2808 -1.6162 32 1 1.4522 -2.7741 -0.6592 33 1 3.1340 -2.6592 -1.2766 34 1 1.5981 -3.2359 1.7872 35 1 3.1382 -3.9252 1.2205 36 1 3.1142 -2.8413 2.6322 37 1 0.8095 0.4819 4.7455 38 1 0.6478 3.2349 4.0393 39 1 -0.9522 2.4740 3.8674 40 1 -3.6271 2.5016 4.2770 41 1 0.5269 4.6424 5.9299 42 1 -0.4694 4.1508 7.4022 43 1 1.0244 2.1283 7.7373 44 1 2.0203 2.6199 6.2648 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324174623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:21 Heat of formation + Delta-G solvation = -54.360157 kcal Electronic energy + Delta-G solvation = -24925.559222 eV Core-core repulsion = 21457.308638 eV Total energy + Delta-G solvation = -3468.250583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00773 -40.09532 -38.75508 -38.50897 -34.97979 -34.26580 -33.54453 -32.68365 -29.33381 -28.53672 -27.51428 -25.48751 -25.03563 -23.10428 -22.56704 -21.67067 -21.25380 -20.40079 -18.72443 -18.12067 -17.87004 -17.01851 -16.95041 -16.62139 -16.17544 -15.67787 -15.61682 -15.24234 -14.79781 -14.61588 -14.38795 -14.17236 -13.96956 -13.62945 -13.56352 -13.30639 -13.13961 -12.89246 -12.80991 -12.72976 -12.61783 -12.33912 -12.26018 -12.10293 -11.77358 -11.58104 -11.45980 -11.39798 -11.18696 -10.68312 -10.46754 -10.18548 -9.85438 -9.76568 -8.15299 -6.20928 0.42026 1.34558 1.36631 1.42345 1.50834 2.19877 2.37191 2.53995 2.94972 3.37323 3.56897 3.64615 3.74137 3.97242 4.11131 4.17495 4.28738 4.35069 4.47341 4.50578 4.61017 4.64243 4.64718 4.73952 4.82557 4.92443 4.94675 5.01091 5.04059 5.08148 5.15901 5.19345 5.22060 5.30114 5.34224 5.48573 5.51647 5.53891 5.58190 5.92277 6.14137 6.33759 6.38048 6.72348 6.82161 7.07743 7.38937 8.85001 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.004688 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.568816 B = 5971.411583 C = 6297.575505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.118 4.118 6 C 0.120 3.880 7 H 0.091 0.909 8 C -0.152 4.152 9 N -0.585 5.585 10 C 0.522 3.478 11 O -0.541 6.541 12 C 0.487 3.513 13 O -0.538 6.538 14 N -0.672 5.672 15 C 0.154 3.846 16 C 0.007 3.993 17 C -0.509 4.509 18 H 0.058 0.942 19 C 0.034 3.966 20 N -0.894 5.894 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.269 1.269 25 C -0.189 4.189 26 C -0.183 4.183 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.409 0.591 38 H 0.037 0.963 39 H 0.095 0.905 40 H 0.264 0.736 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.504 -8.795 -13.016 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 H 0.092 0.908 4 C -0.157 4.157 5 C -0.155 4.155 6 C 0.019 3.981 7 H 0.109 0.891 8 C -0.209 4.209 9 N -0.319 5.319 10 C 0.305 3.695 11 O -0.419 6.419 12 C 0.268 3.732 13 O -0.418 6.418 14 N -0.322 5.322 15 C 0.032 3.968 16 C 0.006 3.994 17 C -0.546 4.546 18 H 0.077 0.923 19 C -0.167 4.167 20 N -0.531 5.531 21 Si 0.767 3.233 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.193 1.193 25 C -0.227 4.227 26 C -0.220 4.220 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.244 0.756 38 H 0.055 0.945 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.378 -8.572 -13.261 18.896 hybrid contribution -0.994 -0.322 1.015 1.457 sum 9.384 -8.894 -12.246 17.808 Atomic orbital electron populations 1.22290 0.95240 1.01457 1.03112 1.21885 0.94530 0.96605 0.84551 0.90796 1.22760 1.03004 0.94876 0.95056 1.22913 1.02984 0.97038 0.92591 1.22441 0.94772 0.85306 0.95562 0.89081 1.22025 1.01528 0.97466 0.99908 1.48633 1.48627 1.30479 1.04188 1.19793 0.80946 0.85780 0.83003 1.90694 1.53354 1.51846 1.45995 1.20305 0.81428 0.87780 0.83706 1.90658 1.55490 1.50093 1.45534 1.45878 1.57280 1.20353 1.08675 1.21118 0.97600 0.81704 0.96404 1.19177 0.93839 0.96997 0.89342 1.20708 0.97207 1.32058 1.04666 0.92350 1.25560 0.99624 0.96738 0.94788 1.69907 1.23631 1.34816 1.24771 0.85806 0.79252 0.80633 0.77608 1.19871 1.21196 1.19346 1.22938 1.04006 0.92024 1.03771 1.22875 0.94421 1.03116 1.01616 0.93960 0.90222 0.92607 0.88018 0.88691 0.90488 0.86443 0.94204 0.88999 0.92762 0.75579 0.94471 0.88786 0.92645 0.90432 0.90523 0.89698 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 8.66 71.98 0.62 -3.95 16 2 C 0.13 3.15 2.82 45.34 0.13 3.28 16 3 H 0.07 2.08 7.28 -2.39 -0.02 2.06 16 4 C -0.12 -1.72 6.49 31.78 0.21 -1.52 16 5 C -0.12 -1.57 6.51 32.06 0.21 -1.36 16 6 C 0.12 2.49 3.80 45.54 0.17 2.66 16 7 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 8 C -0.15 -3.38 8.28 71.98 0.60 -2.79 16 9 N -0.58 -16.71 3.00 -765.71 -2.29 -19.00 16 10 C 0.52 19.00 7.52 87.27 0.66 19.66 16 11 O -0.54 -21.11 14.23 -3.25 -0.05 -21.16 16 12 C 0.49 20.09 7.05 87.27 0.62 20.71 16 13 O -0.54 -23.27 12.11 -3.24 -0.04 -23.31 16 14 N -0.67 -29.36 5.52 -464.41 -2.56 -31.92 16 15 C 0.15 7.40 5.31 86.38 0.46 7.86 16 16 C 0.01 0.35 1.71 -52.93 -0.09 0.26 16 17 C -0.51 -26.84 8.99 25.60 0.23 -26.61 16 18 H 0.06 3.06 7.88 -2.91 -0.02 3.04 16 19 C 0.03 1.83 5.12 84.66 0.43 2.26 16 20 N -0.89 -49.60 10.99 21.45 0.24 -49.36 16 21 Si 0.94 42.61 29.58 68.60 2.03 44.64 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 C -0.19 -8.28 9.88 30.59 0.30 -7.98 16 26 C -0.18 -7.51 9.94 30.59 0.30 -7.20 16 27 H 0.04 1.56 4.90 -2.39 -0.01 1.55 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.17 7.83 -2.39 -0.02 1.16 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.09 8.07 -2.39 -0.02 1.07 16 33 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.41 8.14 -2.38 -0.02 1.40 16 36 H 0.05 1.50 6.49 -2.39 -0.02 1.48 16 37 H 0.41 17.62 7.99 -92.71 -0.74 16.88 16 38 H 0.04 1.75 7.97 -2.39 -0.02 1.73 16 39 H 0.09 5.18 5.37 -2.39 -0.01 5.16 16 40 H 0.26 14.08 8.32 -92.70 -0.77 13.31 16 41 H 0.08 3.19 8.10 -2.39 -0.02 3.17 16 42 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -62.31 350.45 2.43 -59.88 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.26 Total: 34.94 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 4.85 Total: 5.29 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -4.62 Total: -100.29 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -0.09 Total: -44.46 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -62.31 2.43 -59.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324174623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.518 kcal (2) G-P(sol) polarization free energy of solvation -62.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds