Wall clock time and date at job start Tue Mar 31 2020 07:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.99411 * 2 1 4 4 C 1.54324 * 109.88274 * 238.90101 * 2 1 3 5 5 H 1.09002 * 110.71702 * 336.92772 * 4 2 1 6 6 C 1.52996 * 110.71663 * 100.02783 * 4 2 1 7 7 C 1.55156 * 102.93901 * 218.38841 * 4 2 1 8 8 C 1.54687 * 101.67803 * 35.33844 * 7 4 2 9 9 N 1.47020 * 109.88175 * 121.09267 * 2 1 3 10 10 C 1.34782 * 125.64974 * 298.32256 * 9 2 1 11 11 O 1.21351 * 120.00027 * 0.02562 * 10 9 2 12 12 C 1.49446 * 120.00093 * 180.02562 * 10 9 2 13 13 O 1.21353 * 119.99889 * 4.47611 * 12 10 9 14 14 N 1.34777 * 120.00017 * 184.47573 * 12 10 9 15 15 C 1.46497 * 119.99849 * 184.86301 * 14 12 10 16 16 C 1.53000 * 109.47126 * 175.06702 * 15 14 12 17 17 C 1.50704 * 115.55229 * 59.17955 * 16 15 14 18 18 H 1.07997 * 120.00181 * 215.28978 * 17 16 15 19 19 C 1.37878 * 119.99707 * 35.57214 * 17 16 15 20 20 N 1.31518 * 120.00254 * 9.08433 * 19 17 16 21 21 Si 1.86796 * 120.00029 * 189.09069 * 19 17 16 22 22 H 1.48497 * 109.47163 * 59.99659 * 21 19 17 23 23 H 1.48501 * 109.47266 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47091 * 299.99609 * 21 19 17 25 25 C 1.53005 * 117.50241 * 204.85251 * 16 15 14 26 26 C 1.53006 * 117.49828 * 273.51470 * 16 15 14 27 27 H 1.09005 * 109.47416 * 300.35983 * 1 2 3 28 28 H 1.08993 * 109.47453 * 60.36222 * 1 2 3 29 29 H 1.09004 * 109.47159 * 180.36395 * 1 2 3 30 30 H 1.08998 * 109.47630 * 59.99719 * 6 4 2 31 31 H 1.09001 * 109.46896 * 179.97438 * 6 4 2 32 32 H 1.09000 * 109.47197 * 299.99799 * 6 4 2 33 33 H 1.09006 * 110.99712 * 153.57704 * 7 4 2 34 34 H 1.08998 * 111.00764 * 277.38928 * 7 4 2 35 35 H 1.08998 * 110.39020 * 204.35932 * 8 7 4 36 36 H 1.09004 * 110.23691 * 82.11416 * 8 7 4 37 37 H 0.96998 * 119.99886 * 4.86482 * 14 12 10 38 38 H 1.08997 * 109.47492 * 55.06766 * 15 14 12 39 39 H 1.09004 * 109.47379 * 295.06377 * 15 14 12 40 40 H 0.96996 * 120.00452 * 185.00155 * 20 19 17 41 41 H 1.08998 * 117.50187 * 215.00258 * 25 16 15 42 42 H 1.09000 * 117.49375 * 0.02562 * 25 16 15 43 43 H 1.08993 * 117.49564 * 359.97141 * 26 16 15 44 44 H 1.08993 * 117.49898 * 144.97343 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3039 -1.4438 -1.6199 6 6 2.4733 0.2379 -2.3338 7 6 3.2876 -1.5142 -0.6922 8 6 2.8191 -1.8762 0.7368 9 7 2.0300 -0.7140 1.1839 10 6 1.8085 -0.3611 2.4658 11 8 1.1447 0.6229 2.7182 12 6 2.3804 -1.1817 3.5762 13 8 3.1108 -2.1177 3.3250 14 7 2.0850 -0.8822 4.8566 15 6 2.7283 -1.6177 5.9481 16 6 2.3162 -1.0052 7.2882 17 6 0.8363 -1.0003 7.5731 18 1 0.3929 -0.1764 8.1124 19 6 0.0495 -2.0506 7.1501 20 7 0.6085 -3.1352 6.6595 21 14 -1.8107 -1.9329 7.2738 22 1 -2.2883 -0.7799 6.4690 23 1 -2.4213 -3.1838 6.7566 24 1 -2.2012 -1.7412 8.6937 25 6 3.2632 -1.1984 8.4743 26 6 3.1396 0.1746 7.8088 27 1 -0.3634 0.5194 0.8868 28 1 -0.3634 0.5082 -0.8931 29 1 -0.3634 -1.0277 0.0065 30 1 3.2630 0.8860 -1.9539 31 1 2.8404 -0.3121 -3.2002 32 1 1.6148 0.8434 -2.6244 33 1 3.4852 -2.4111 -1.2795 34 1 4.1656 -0.8690 -0.6609 35 1 3.6776 -2.0263 1.3914 36 1 2.1971 -2.7711 0.7144 37 1 1.4464 -0.1796 5.0554 38 1 3.8110 -1.5570 5.8385 39 1 2.4177 -2.6620 5.9151 40 1 0.0552 -3.8437 6.2952 41 1 2.8159 -1.3220 9.4606 42 1 4.1800 -1.7614 8.2998 43 1 3.9751 0.5141 7.1967 44 1 2.6110 0.9544 8.3569 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324837769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:40 Heat of formation + Delta-G solvation = -47.098528 kcal Electronic energy + Delta-G solvation = -24587.756919 eV Core-core repulsion = 21119.821223 eV Total energy + Delta-G solvation = -3467.935696 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48533 -38.68936 -37.40027 -36.69101 -33.50286 -32.65383 -32.21253 -31.40367 -28.50105 -26.68398 -25.55646 -24.49195 -23.57357 -21.77555 -21.22840 -20.24346 -19.44416 -18.92341 -17.32756 -16.74874 -16.14216 -15.89381 -15.14511 -14.80878 -14.73381 -14.18368 -13.94795 -13.86717 -13.60107 -13.43707 -12.99538 -12.97037 -12.70757 -12.61379 -12.14048 -11.87732 -11.79012 -11.64600 -11.55178 -11.29629 -10.98451 -10.92061 -10.82345 -10.65392 -10.56211 -10.52587 -10.29260 -9.61944 -9.21490 -8.87801 -8.83393 -8.61064 -8.30961 -8.01045 -6.09402 -4.20747 2.00679 2.73587 3.25572 3.31714 3.34825 3.82163 4.01574 4.31413 4.37944 4.47285 4.64100 4.87648 5.12805 5.18063 5.20867 5.21990 5.29073 5.41722 5.48701 5.51586 5.55528 5.78065 5.80155 5.84655 5.96269 6.01081 6.04044 6.13330 6.23775 6.25952 6.42089 6.50581 6.55836 6.64526 6.84015 7.00835 7.22706 7.31461 7.46945 7.52147 7.89740 7.97174 8.27624 8.39140 8.77263 8.81762 9.42116 10.86805 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019177 B = 0.004406 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.764202 B = 6353.869887 C = 7014.930416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 H 0.077 0.923 4 C -0.102 4.102 5 H 0.086 0.914 6 C -0.141 4.141 7 C -0.132 4.132 8 C 0.097 3.903 9 N -0.594 5.594 10 C 0.522 3.478 11 O -0.523 6.523 12 C 0.495 3.505 13 O -0.541 6.541 14 N -0.653 5.653 15 C 0.150 3.850 16 C 0.035 3.965 17 C -0.496 4.496 18 H 0.063 0.937 19 C 0.074 3.926 20 N -0.871 5.871 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.193 4.193 26 C -0.210 4.210 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.412 0.588 38 H 0.032 0.968 39 H 0.125 0.875 40 H 0.264 0.736 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 3.315 -15.813 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.033 3.967 3 H 0.095 0.905 4 C -0.121 4.121 5 H 0.105 0.895 6 C -0.198 4.198 7 C -0.170 4.170 8 C -0.025 4.025 9 N -0.329 5.329 10 C 0.306 3.694 11 O -0.398 6.398 12 C 0.275 3.725 13 O -0.421 6.421 14 N -0.302 5.302 15 C 0.028 3.972 16 C 0.035 3.965 17 C -0.533 4.533 18 H 0.081 0.919 19 C -0.130 4.130 20 N -0.507 5.507 21 Si 0.718 3.282 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.231 4.231 26 C -0.247 4.247 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.248 0.752 38 H 0.051 0.949 39 H 0.142 0.858 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.707 2.994 -15.727 16.433 hybrid contribution -1.304 0.338 0.212 1.363 sum 2.403 3.332 -15.515 16.049 Atomic orbital electron populations 1.22150 0.94614 1.02464 1.02970 1.21707 0.94743 0.96324 0.83914 0.90458 1.22317 0.97953 0.97620 0.94227 0.89538 1.21752 1.01492 0.98732 0.97832 1.22915 0.97587 1.00811 0.95721 1.22599 0.96927 0.87914 0.95096 1.48336 1.51595 1.28747 1.04211 1.20308 0.80928 0.85373 0.82807 1.90720 1.38687 1.27151 1.83285 1.19725 0.83332 0.85127 0.84333 1.90624 1.38691 1.29279 1.83469 1.45740 1.42797 1.37560 1.04069 1.21372 0.92471 1.00095 0.83261 1.19163 0.92653 0.94731 0.89980 1.20508 0.90076 1.05219 1.37450 0.91921 1.24942 0.98841 0.94307 0.94867 1.69774 1.35334 1.06146 1.39467 0.86662 0.85284 0.77610 0.78652 1.19918 1.21173 1.20068 1.22930 1.01853 0.98791 0.99548 1.22950 1.03573 0.92093 1.06131 0.90959 0.91757 0.92421 0.92344 0.92109 0.92337 0.89811 0.90586 0.87577 0.91291 0.75217 0.94945 0.85793 0.92541 0.90070 0.91418 0.91301 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.10 37.16 0.34 -1.67 16 2 C 0.14 1.68 3.06 -66.95 -0.20 1.48 16 3 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 4 C -0.10 -0.93 3.08 -88.79 -0.27 -1.20 16 5 H 0.09 0.74 7.85 -51.93 -0.41 0.33 16 6 C -0.14 -1.01 9.14 37.16 0.34 -0.67 16 7 C -0.13 -1.24 6.52 -24.70 -0.16 -1.41 16 8 C 0.10 1.29 6.12 -2.65 -0.02 1.27 16 9 N -0.59 -9.15 3.07 -163.66 -0.50 -9.66 16 10 C 0.52 9.93 7.71 -11.58 -0.09 9.84 16 11 O -0.52 -10.80 15.54 5.50 0.09 -10.71 16 12 C 0.50 10.41 7.84 -11.59 -0.09 10.32 16 13 O -0.54 -11.78 13.77 5.49 0.08 -11.71 16 14 N -0.65 -14.51 5.42 -60.73 -0.33 -14.84 16 15 C 0.15 3.52 4.85 -4.04 -0.02 3.50 16 16 C 0.04 0.84 1.92 -155.65 -0.30 0.54 16 17 C -0.50 -12.81 8.51 -34.44 -0.29 -13.11 16 18 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 19 C 0.07 1.94 5.27 -17.82 -0.09 1.84 16 20 N -0.87 -23.39 10.62 55.43 0.59 -22.80 16 21 Si 0.89 20.61 29.55 -169.99 -5.02 15.58 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.19 -4.21 9.95 -26.69 -0.27 -4.47 16 26 C -0.21 -4.41 9.95 -26.69 -0.27 -4.68 16 27 H 0.07 1.08 6.88 -51.93 -0.36 0.72 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.69 8.02 -51.93 -0.42 0.28 16 35 H 0.11 1.60 6.06 -51.93 -0.31 1.28 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.41 9.29 7.62 -40.82 -0.31 8.98 16 38 H 0.03 0.73 8.11 -51.93 -0.42 0.31 16 39 H 0.12 3.27 5.69 -51.93 -0.30 2.98 16 40 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 41 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 356.01 15.07 5.37 5.37 Total: -1.00 -28.25 356.01 -8.26 -36.51 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -7.12 Total: 10.68 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.39 Total: 1.59 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.24 Total: -47.30 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.16 Total: -22.42 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.25 -8.26 -36.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324837769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.590 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds