Wall clock time and date at job start Tue Mar 31 2020 07:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.99411 * 2 1 4 4 C 1.54324 * 109.88274 * 238.90101 * 2 1 3 5 5 H 1.09002 * 110.71702 * 336.92772 * 4 2 1 6 6 C 1.52996 * 110.71663 * 100.02783 * 4 2 1 7 7 C 1.55156 * 102.93901 * 218.38841 * 4 2 1 8 8 C 1.54687 * 101.67803 * 35.33844 * 7 4 2 9 9 N 1.47020 * 109.88175 * 121.09267 * 2 1 3 10 10 C 1.34782 * 125.64974 * 298.32256 * 9 2 1 11 11 O 1.21351 * 120.00027 * 0.02562 * 10 9 2 12 12 C 1.49446 * 120.00093 * 180.02562 * 10 9 2 13 13 O 1.21353 * 119.99889 * 4.47611 * 12 10 9 14 14 N 1.34777 * 120.00017 * 184.47573 * 12 10 9 15 15 C 1.46497 * 119.99849 * 184.86301 * 14 12 10 16 16 C 1.53000 * 109.47126 * 175.06702 * 15 14 12 17 17 C 1.50704 * 115.55229 * 59.17955 * 16 15 14 18 18 H 1.07997 * 120.00181 * 215.28978 * 17 16 15 19 19 C 1.37878 * 119.99707 * 35.57214 * 17 16 15 20 20 N 1.31518 * 120.00254 * 9.08433 * 19 17 16 21 21 Si 1.86796 * 120.00029 * 189.09069 * 19 17 16 22 22 H 1.48497 * 109.47163 * 59.99659 * 21 19 17 23 23 H 1.48501 * 109.47266 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47091 * 299.99609 * 21 19 17 25 25 C 1.53005 * 117.50241 * 204.85251 * 16 15 14 26 26 C 1.53006 * 117.49828 * 273.51470 * 16 15 14 27 27 H 1.09005 * 109.47416 * 300.35983 * 1 2 3 28 28 H 1.08993 * 109.47453 * 60.36222 * 1 2 3 29 29 H 1.09004 * 109.47159 * 180.36395 * 1 2 3 30 30 H 1.08998 * 109.47630 * 59.99719 * 6 4 2 31 31 H 1.09001 * 109.46896 * 179.97438 * 6 4 2 32 32 H 1.09000 * 109.47197 * 299.99799 * 6 4 2 33 33 H 1.09006 * 110.99712 * 153.57704 * 7 4 2 34 34 H 1.08998 * 111.00764 * 277.38928 * 7 4 2 35 35 H 1.08998 * 110.39020 * 204.35932 * 8 7 4 36 36 H 1.09004 * 110.23691 * 82.11416 * 8 7 4 37 37 H 0.96998 * 119.99886 * 4.86482 * 14 12 10 38 38 H 1.08997 * 109.47492 * 55.06766 * 15 14 12 39 39 H 1.09004 * 109.47379 * 295.06377 * 15 14 12 40 40 H 0.96996 * 120.00452 * 185.00155 * 20 19 17 41 41 H 1.08998 * 117.50187 * 215.00258 * 25 16 15 42 42 H 1.09000 * 117.49375 * 0.02562 * 25 16 15 43 43 H 1.08993 * 117.49564 * 359.97141 * 26 16 15 44 44 H 1.08993 * 117.49898 * 144.97343 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3039 -1.4438 -1.6199 6 6 2.4733 0.2379 -2.3338 7 6 3.2876 -1.5142 -0.6922 8 6 2.8191 -1.8762 0.7368 9 7 2.0300 -0.7140 1.1839 10 6 1.8085 -0.3611 2.4658 11 8 1.1447 0.6229 2.7182 12 6 2.3804 -1.1817 3.5762 13 8 3.1108 -2.1177 3.3250 14 7 2.0850 -0.8822 4.8566 15 6 2.7283 -1.6177 5.9481 16 6 2.3162 -1.0052 7.2882 17 6 0.8363 -1.0003 7.5731 18 1 0.3929 -0.1764 8.1124 19 6 0.0495 -2.0506 7.1501 20 7 0.6085 -3.1352 6.6595 21 14 -1.8107 -1.9329 7.2738 22 1 -2.2883 -0.7799 6.4690 23 1 -2.4213 -3.1838 6.7566 24 1 -2.2012 -1.7412 8.6937 25 6 3.2632 -1.1984 8.4743 26 6 3.1396 0.1746 7.8088 27 1 -0.3634 0.5194 0.8868 28 1 -0.3634 0.5082 -0.8931 29 1 -0.3634 -1.0277 0.0065 30 1 3.2630 0.8860 -1.9539 31 1 2.8404 -0.3121 -3.2002 32 1 1.6148 0.8434 -2.6244 33 1 3.4852 -2.4111 -1.2795 34 1 4.1656 -0.8690 -0.6609 35 1 3.6776 -2.0263 1.3914 36 1 2.1971 -2.7711 0.7144 37 1 1.4464 -0.1796 5.0554 38 1 3.8110 -1.5570 5.8385 39 1 2.4177 -2.6620 5.9151 40 1 0.0552 -3.8437 6.2952 41 1 2.8159 -1.3220 9.4606 42 1 4.1800 -1.7614 8.2998 43 1 3.9751 0.5141 7.1967 44 1 2.6110 0.9544 8.3569 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324837769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:39 Heat of formation + Delta-G solvation = -63.766351 kcal Electronic energy + Delta-G solvation = -24588.479690 eV Core-core repulsion = 21119.821223 eV Total energy + Delta-G solvation = -3468.658467 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.86376 -40.12691 -38.80841 -38.46466 -35.05961 -34.21457 -33.84740 -32.37362 -29.48853 -28.36296 -27.50000 -25.65583 -24.72380 -23.09151 -22.82608 -21.31463 -21.18008 -20.44334 -18.85874 -18.11846 -17.86531 -17.30220 -16.77393 -16.56732 -16.26471 -15.63888 -15.40066 -15.00658 -14.77409 -14.61863 -14.50247 -14.33289 -13.94333 -13.63018 -13.47990 -13.46122 -13.13577 -12.86166 -12.71946 -12.68792 -12.66103 -12.51029 -12.33554 -12.07878 -11.78280 -11.55622 -11.49499 -11.40661 -11.13860 -10.69293 -10.44989 -10.18033 -9.91603 -9.78085 -8.06974 -6.23316 0.42838 1.34392 1.39762 1.43230 1.48570 2.21751 2.39151 2.59275 2.99403 3.39671 3.57731 3.60803 3.68161 3.86181 4.19571 4.20369 4.27039 4.37577 4.47911 4.54937 4.60144 4.65734 4.69326 4.73161 4.85757 4.91597 4.94568 4.98222 5.05593 5.08186 5.13626 5.15588 5.24896 5.30651 5.33533 5.47427 5.48717 5.55472 5.59462 5.91419 6.11174 6.32901 6.39524 6.73543 6.83009 7.09883 7.40806 8.86461 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019177 B = 0.004406 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.764202 B = 6353.869887 C = 7014.930416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.076 0.924 4 C -0.091 4.091 5 H 0.099 0.901 6 C -0.137 4.137 7 C -0.120 4.120 8 C 0.088 3.912 9 N -0.586 5.586 10 C 0.519 3.481 11 O -0.547 6.547 12 C 0.492 3.508 13 O -0.552 6.552 14 N -0.659 5.659 15 C 0.163 3.837 16 C 0.005 3.995 17 C -0.506 4.506 18 H 0.057 0.943 19 C 0.037 3.963 20 N -0.892 5.892 21 Si 0.940 3.060 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.270 1.270 25 C -0.189 4.189 26 C -0.188 4.188 27 H 0.039 0.961 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.408 0.592 38 H 0.037 0.963 39 H 0.094 0.906 40 H 0.260 0.740 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 3.813 -17.904 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.094 0.906 4 C -0.110 4.110 5 H 0.117 0.883 6 C -0.194 4.194 7 C -0.158 4.158 8 C -0.034 4.034 9 N -0.320 5.320 10 C 0.302 3.698 11 O -0.426 6.426 12 C 0.272 3.728 13 O -0.432 6.432 14 N -0.307 5.307 15 C 0.040 3.960 16 C 0.004 3.996 17 C -0.543 4.543 18 H 0.075 0.925 19 C -0.164 4.164 20 N -0.529 5.529 21 Si 0.766 3.234 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.195 1.195 25 C -0.227 4.227 26 C -0.225 4.225 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.244 0.756 38 H 0.055 0.945 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.019 3.486 -17.849 18.625 hybrid contribution -1.348 0.170 0.834 1.594 sum 2.671 3.656 -17.015 17.607 Atomic orbital electron populations 1.22114 0.94478 1.02260 1.02901 1.22076 0.94954 0.96581 0.83985 0.90605 1.22329 0.97815 0.97819 0.93001 0.88255 1.21745 1.01768 0.98402 0.97508 1.22912 0.97753 1.02147 0.92942 1.22753 0.95953 0.87306 0.97350 1.48504 1.50562 1.29132 1.03803 1.19892 0.81234 0.85049 0.83644 1.90702 1.40023 1.28033 1.83804 1.20182 0.82936 0.85082 0.84594 1.90613 1.39077 1.29780 1.83762 1.45712 1.42992 1.37517 1.04444 1.21059 0.92554 0.98582 0.83828 1.19215 0.92226 0.97444 0.90686 1.20721 0.91522 1.04842 1.37260 0.92501 1.25490 1.01881 0.94139 0.94894 1.69917 1.36057 1.06543 1.40414 0.85884 0.81604 0.77231 0.78658 1.20035 1.21289 1.19505 1.22938 1.01631 0.99636 0.98534 1.22949 1.02971 0.91485 1.05070 0.94177 0.88681 0.92604 0.92629 0.90253 0.91625 0.87064 0.90048 0.89609 0.91366 0.75590 0.94494 0.88806 0.93029 0.90443 0.90107 0.89621 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.10 71.98 0.66 -3.06 16 2 C 0.13 2.92 3.06 45.34 0.14 3.05 16 3 H 0.08 1.81 7.82 -2.39 -0.02 1.79 16 4 C -0.09 -1.36 3.08 -9.61 -0.03 -1.39 16 5 H 0.10 1.30 7.85 -2.39 -0.02 1.28 16 6 C -0.14 -1.45 9.14 71.98 0.66 -0.79 16 7 C -0.12 -1.91 6.52 31.91 0.21 -1.70 16 8 C 0.09 2.26 6.12 86.78 0.53 2.79 16 9 N -0.59 -17.87 3.07 -790.07 -2.42 -20.30 16 10 C 0.52 20.09 7.71 87.27 0.67 20.76 16 11 O -0.55 -23.14 15.54 -3.25 -0.05 -23.19 16 12 C 0.49 21.18 7.84 87.27 0.68 21.86 16 13 O -0.55 -24.60 13.77 -3.26 -0.04 -24.65 16 14 N -0.66 -29.98 5.42 -464.42 -2.52 -32.49 16 15 C 0.16 7.75 4.85 86.38 0.42 8.17 16 16 C 0.00 0.24 1.92 -52.92 -0.10 0.13 16 17 C -0.51 -26.39 8.51 25.60 0.22 -26.17 16 18 H 0.06 2.96 7.83 -2.91 -0.02 2.94 16 19 C 0.04 1.97 5.27 84.65 0.45 2.42 16 20 N -0.89 -48.92 10.62 21.45 0.23 -48.69 16 21 Si 0.94 42.69 29.55 68.60 2.03 44.72 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C -0.19 -8.10 9.95 30.62 0.30 -7.80 16 26 C -0.19 -7.64 9.95 30.62 0.30 -7.33 16 27 H 0.04 1.20 6.88 -2.38 -0.02 1.18 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 0.64 8.10 -2.39 -0.02 0.62 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.08 1.25 8.02 -2.39 -0.02 1.23 16 35 H 0.09 2.58 6.06 -2.39 -0.01 2.57 16 36 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.41 18.97 7.62 -92.71 -0.71 18.27 16 38 H 0.04 1.69 8.11 -2.39 -0.02 1.67 16 39 H 0.09 5.11 5.69 -2.39 -0.01 5.09 16 40 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 41 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -61.72 356.01 2.61 -59.10 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: 0.29 Total: 34.55 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.11 Total: 10.95 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -4.71 Total: -101.48 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -0.10 Total: -47.84 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -61.72 2.61 -59.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324837769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.665 kcal (2) G-P(sol) polarization free energy of solvation -61.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds