Wall clock time and date at job start Tue Mar 31 2020 06:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.89001 * 2 1 4 4 C 1.55159 * 111.00435 * 236.11740 * 2 1 3 5 5 C 1.54329 * 102.94344 * 206.38924 * 4 2 1 6 6 H 1.08994 * 110.01451 * 141.68218 * 5 4 2 7 7 C 1.53001 * 109.87882 * 262.77660 * 5 4 2 8 8 N 1.47024 * 107.27164 * 22.19073 * 5 4 2 9 9 C 1.34776 * 125.65325 * 181.02817 * 8 5 4 10 10 O 1.21355 * 119.99273 * 359.97438 * 9 8 5 11 11 C 1.49443 * 120.00437 * 179.97438 * 9 8 5 12 12 O 1.21358 * 119.99913 * 5.08699 * 11 9 8 13 13 N 1.34774 * 120.00136 * 185.08416 * 11 9 8 14 14 C 1.46503 * 119.99956 * 185.18301 * 13 11 9 15 15 C 1.52997 * 109.46869 * 175.18111 * 14 13 11 16 16 C 1.50704 * 115.54970 * 56.60269 * 15 14 13 17 17 H 1.07997 * 120.00023 * 215.23328 * 16 15 14 18 18 C 1.37873 * 120.00129 * 35.51512 * 16 15 14 19 19 N 1.31520 * 119.99742 * 10.31502 * 18 16 15 20 20 Si 1.86794 * 120.00195 * 190.31843 * 18 16 15 21 21 H 1.48502 * 109.47090 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47557 * 119.99673 * 20 18 16 23 23 H 1.48503 * 109.47069 * 239.99633 * 20 18 16 24 24 C 1.53008 * 117.49769 * 202.26993 * 15 14 13 25 25 C 1.52995 * 117.50059 * 270.92795 * 15 14 13 26 26 C 1.47430 * 108.69863 * 1.28649 * 8 5 4 27 27 H 1.09004 * 109.47438 * 183.87912 * 1 2 3 28 28 H 1.08995 * 109.47407 * 303.88746 * 1 2 3 29 29 H 1.09004 * 109.46855 * 63.88336 * 1 2 3 30 30 H 1.08994 * 110.72477 * 88.02635 * 4 2 1 31 31 H 1.08997 * 110.72029 * 324.74477 * 4 2 1 32 32 H 1.09005 * 109.47007 * 179.25705 * 7 5 4 33 33 H 1.08997 * 109.47267 * 299.25801 * 7 5 4 34 34 H 1.09003 * 109.47463 * 59.25887 * 7 5 4 35 35 H 0.96998 * 119.99893 * 5.17661 * 13 11 9 36 36 H 1.08999 * 109.47275 * 55.18150 * 14 13 11 37 37 H 1.09001 * 109.46900 * 295.17741 * 14 13 11 38 38 H 0.97010 * 119.99672 * 184.99447 * 19 18 16 39 39 H 1.09004 * 117.49486 * 215.00543 * 24 15 14 40 40 H 1.08996 * 117.49497 * 0.02562 * 24 15 14 41 41 H 1.09001 * 117.49727 * 359.97438 * 25 15 14 42 42 H 1.09003 * 117.50111 * 144.97703 * 25 15 14 43 43 H 1.09005 * 110.36155 * 94.48980 * 26 8 5 44 44 H 1.09000 * 110.36755 * 216.80306 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0861 -0.8075 -1.2025 5 6 3.4678 -1.2732 -0.6968 6 1 3.6685 -2.2877 -1.0409 7 6 4.5552 -0.3259 -1.2079 8 7 3.4280 -1.2423 0.7726 9 6 4.4489 -1.5603 1.5930 10 8 5.5144 -1.9090 1.1285 11 6 4.2688 -1.4836 3.0745 12 8 3.1786 -1.2248 3.5407 13 7 5.3171 -1.7018 3.8930 14 6 5.1182 -1.7390 5.3440 15 6 6.4323 -2.1189 6.0292 16 6 7.6080 -1.2284 5.7196 17 1 8.5994 -1.6499 5.6435 18 6 7.4188 0.1253 5.5391 19 7 6.2595 0.6722 5.8337 20 14 8.8087 1.1825 4.8761 21 1 10.0007 0.3330 4.6256 22 1 8.3812 1.8230 3.6063 23 1 9.1495 2.2322 5.8697 24 6 6.3490 -2.7153 7.4359 25 6 6.7115 -3.6075 6.2461 26 6 2.0843 -0.8117 1.2000 27 1 -0.3634 -1.0253 0.0695 28 1 -0.3634 0.5729 0.8530 29 1 -0.3633 0.4524 -0.9228 30 1 2.1916 -0.1695 -2.0799 31 1 1.4472 -1.6631 -1.4210 32 1 5.5263 -0.6532 -0.8362 33 1 4.5617 -0.3345 -2.2978 34 1 4.3525 0.6848 -0.8537 35 1 6.2032 -1.8342 3.5214 36 1 4.3548 -2.4780 5.5872 37 1 4.7976 -0.7571 5.6921 38 1 6.1021 1.6095 5.6394 39 1 7.1445 -2.4634 8.1372 40 1 5.3579 -2.8373 7.8728 41 1 5.9586 -4.3162 5.9009 42 1 7.7454 -3.9429 6.1643 43 1 1.4537 -1.6784 1.3987 44 1 2.1523 -0.1801 2.0858 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326143889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:12 Heat of formation + Delta-G solvation = -47.689175 kcal Electronic energy + Delta-G solvation = -24646.187259 eV Core-core repulsion = 21178.225952 eV Total energy + Delta-G solvation = -3467.961308 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47762 -38.65432 -37.40148 -36.68952 -33.41171 -32.79780 -32.21617 -31.66611 -27.18956 -26.75029 -25.77281 -25.49568 -23.69762 -21.33575 -21.08033 -20.26913 -19.42567 -18.89920 -17.47432 -16.49840 -16.21027 -15.92805 -15.31442 -14.84519 -14.73815 -14.19617 -13.84591 -13.72871 -13.62251 -13.46845 -13.00121 -12.74906 -12.67524 -12.56499 -12.30358 -12.00335 -11.79096 -11.73239 -11.58336 -11.15357 -11.02021 -10.79507 -10.78530 -10.63088 -10.59213 -10.51539 -10.28945 -9.61113 -9.22574 -8.88476 -8.84237 -8.61822 -8.31241 -7.99823 -6.11728 -4.20869 2.00937 2.73413 3.22809 3.32887 3.36388 3.81402 4.02098 4.31318 4.36703 4.51599 4.69150 4.88277 4.98775 5.20182 5.23935 5.25585 5.33587 5.48149 5.52361 5.53649 5.62970 5.70368 5.79921 5.92562 5.94015 5.96167 6.07957 6.18221 6.22805 6.25364 6.44318 6.49931 6.55173 6.64725 6.83539 7.00572 7.22441 7.30973 7.46632 7.50621 7.86723 7.97070 8.27148 8.39420 8.77682 8.81757 9.41610 10.86038 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.004589 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.526574 B = 6099.560822 C = 6648.961632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.124 4.124 5 C 0.132 3.868 6 H 0.076 0.924 7 C -0.165 4.165 8 N -0.594 5.594 9 C 0.522 3.478 10 O -0.523 6.523 11 C 0.495 3.505 12 O -0.541 6.541 13 N -0.653 5.653 14 C 0.154 3.846 15 C 0.035 3.965 16 C -0.495 4.495 17 H 0.064 0.936 18 C 0.074 3.926 19 N -0.869 5.869 20 Si 0.889 3.111 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.283 1.283 24 C -0.193 4.193 25 C -0.210 4.210 26 C 0.106 3.894 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.412 0.588 36 H 0.033 0.967 37 H 0.120 0.880 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.842 -1.428 -12.554 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 H 0.103 0.897 4 C -0.162 4.162 5 C 0.029 3.971 6 H 0.094 0.906 7 C -0.223 4.223 8 N -0.329 5.329 9 C 0.306 3.694 10 O -0.398 6.398 11 C 0.274 3.726 12 O -0.421 6.421 13 N -0.301 5.301 14 C 0.032 3.968 15 C 0.034 3.966 16 C -0.532 4.532 17 H 0.082 0.918 18 C -0.130 4.130 19 N -0.506 5.506 20 Si 0.716 3.284 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.231 4.231 25 C -0.247 4.247 26 C -0.017 4.017 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.249 0.751 36 H 0.051 0.949 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.004 -1.283 -12.315 15.918 hybrid contribution 1.144 0.481 -0.466 1.326 sum -8.859 -0.802 -12.781 15.572 Atomic orbital electron populations 1.21674 0.93716 1.02239 1.02043 1.22479 0.96248 0.99560 0.94642 0.89750 1.22800 0.94865 1.00303 0.98220 1.21617 0.95888 0.99896 0.79651 0.90609 1.22162 1.00028 0.99404 1.00668 1.48330 1.12716 1.65749 1.06122 1.20315 0.83036 0.77970 0.88082 1.90717 1.25523 1.46115 1.77454 1.19724 0.85753 0.80430 0.86666 1.90644 1.25611 1.48889 1.76924 1.45726 1.10396 1.66058 1.07942 1.21273 0.95525 1.03580 0.76446 1.19173 0.94424 0.89473 0.93549 1.20571 0.92490 0.91193 1.48915 0.91811 1.24944 0.96008 0.97593 0.94450 1.69861 1.23278 1.12935 1.44478 0.86576 0.82573 0.80460 0.78794 1.19481 1.20755 1.20935 1.22926 1.00132 1.06952 0.93105 1.22958 1.00199 0.95736 1.05831 1.22714 0.81934 0.98990 0.98023 0.92321 0.92055 0.92331 0.89951 0.90494 0.90837 0.91789 0.92426 0.75147 0.94887 0.86286 0.92696 0.90065 0.91423 0.91297 0.90428 0.91079 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.31 37.16 0.35 -0.75 16 2 C -0.11 -1.09 3.65 -88.36 -0.32 -1.41 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.12 -1.11 5.96 -24.89 -0.15 -1.26 16 5 C 0.13 1.63 3.49 -66.95 -0.23 1.39 16 6 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 7 C -0.16 -2.02 9.06 37.16 0.34 -1.68 16 8 N -0.59 -9.19 3.08 -163.38 -0.50 -9.69 16 9 C 0.52 9.96 7.69 -11.59 -0.09 9.87 16 10 O -0.52 -10.79 15.40 5.49 0.08 -10.71 16 11 C 0.49 10.44 7.84 -11.59 -0.09 10.35 16 12 O -0.54 -11.83 13.86 5.49 0.08 -11.75 16 13 N -0.65 -14.54 5.39 -60.73 -0.33 -14.87 16 14 C 0.15 3.61 4.80 -4.04 -0.02 3.59 16 15 C 0.03 0.82 1.95 -155.66 -0.30 0.51 16 16 C -0.49 -12.76 8.38 -34.44 -0.29 -13.05 16 17 H 0.06 1.66 7.84 -52.49 -0.41 1.25 16 18 C 0.07 1.93 5.24 -17.82 -0.09 1.83 16 19 N -0.87 -23.31 10.71 55.43 0.59 -22.72 16 20 Si 0.89 20.58 29.55 -169.99 -5.02 15.56 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.19 -4.20 9.96 -26.69 -0.27 -4.47 16 25 C -0.21 -4.40 9.93 -26.70 -0.27 -4.67 16 26 C 0.11 1.42 5.47 -2.41 -0.01 1.41 16 27 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.61 7.83 -51.93 -0.41 0.20 16 31 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 32 H 0.07 1.10 6.75 -51.93 -0.35 0.75 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.41 9.34 7.53 -40.82 -0.31 9.03 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.12 3.13 5.86 -51.93 -0.30 2.83 16 38 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 39 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.07 0.92 7.99 -51.93 -0.41 0.51 16 44 H 0.10 1.59 6.29 -51.93 -0.33 1.26 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -28.25 356.08 -8.33 -36.57 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.14 Total: 10.57 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.45 Total: 1.67 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.24 Total: -47.28 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.16 Total: -22.46 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.25 -8.33 -36.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326143889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.115 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds