Wall clock time and date at job start Tue Mar 31 2020 06:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.89001 * 2 1 4 4 C 1.55159 * 111.00435 * 236.11740 * 2 1 3 5 5 C 1.54329 * 102.94344 * 206.38924 * 4 2 1 6 6 H 1.08994 * 110.01451 * 141.68218 * 5 4 2 7 7 C 1.53001 * 109.87882 * 262.77660 * 5 4 2 8 8 N 1.47024 * 107.27164 * 22.19073 * 5 4 2 9 9 C 1.34776 * 125.65325 * 181.02817 * 8 5 4 10 10 O 1.21355 * 119.99273 * 359.97438 * 9 8 5 11 11 C 1.49443 * 120.00437 * 179.97438 * 9 8 5 12 12 O 1.21358 * 119.99913 * 5.08699 * 11 9 8 13 13 N 1.34774 * 120.00136 * 185.08416 * 11 9 8 14 14 C 1.46503 * 119.99956 * 185.18301 * 13 11 9 15 15 C 1.52997 * 109.46869 * 175.18111 * 14 13 11 16 16 C 1.50704 * 115.54970 * 56.60269 * 15 14 13 17 17 H 1.07997 * 120.00023 * 215.23328 * 16 15 14 18 18 C 1.37873 * 120.00129 * 35.51512 * 16 15 14 19 19 N 1.31520 * 119.99742 * 10.31502 * 18 16 15 20 20 Si 1.86794 * 120.00195 * 190.31843 * 18 16 15 21 21 H 1.48502 * 109.47090 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47557 * 119.99673 * 20 18 16 23 23 H 1.48503 * 109.47069 * 239.99633 * 20 18 16 24 24 C 1.53008 * 117.49769 * 202.26993 * 15 14 13 25 25 C 1.52995 * 117.50059 * 270.92795 * 15 14 13 26 26 C 1.47430 * 108.69863 * 1.28649 * 8 5 4 27 27 H 1.09004 * 109.47438 * 183.87912 * 1 2 3 28 28 H 1.08995 * 109.47407 * 303.88746 * 1 2 3 29 29 H 1.09004 * 109.46855 * 63.88336 * 1 2 3 30 30 H 1.08994 * 110.72477 * 88.02635 * 4 2 1 31 31 H 1.08997 * 110.72029 * 324.74477 * 4 2 1 32 32 H 1.09005 * 109.47007 * 179.25705 * 7 5 4 33 33 H 1.08997 * 109.47267 * 299.25801 * 7 5 4 34 34 H 1.09003 * 109.47463 * 59.25887 * 7 5 4 35 35 H 0.96998 * 119.99893 * 5.17661 * 13 11 9 36 36 H 1.08999 * 109.47275 * 55.18150 * 14 13 11 37 37 H 1.09001 * 109.46900 * 295.17741 * 14 13 11 38 38 H 0.97010 * 119.99672 * 184.99447 * 19 18 16 39 39 H 1.09004 * 117.49486 * 215.00543 * 24 15 14 40 40 H 1.08996 * 117.49497 * 0.02562 * 24 15 14 41 41 H 1.09001 * 117.49727 * 359.97438 * 25 15 14 42 42 H 1.09003 * 117.50111 * 144.97703 * 25 15 14 43 43 H 1.09005 * 110.36155 * 94.48980 * 26 8 5 44 44 H 1.09000 * 110.36755 * 216.80306 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0861 -0.8075 -1.2025 5 6 3.4678 -1.2732 -0.6968 6 1 3.6685 -2.2877 -1.0409 7 6 4.5552 -0.3259 -1.2079 8 7 3.4280 -1.2423 0.7726 9 6 4.4489 -1.5603 1.5930 10 8 5.5144 -1.9090 1.1285 11 6 4.2688 -1.4836 3.0745 12 8 3.1786 -1.2248 3.5407 13 7 5.3171 -1.7018 3.8930 14 6 5.1182 -1.7390 5.3440 15 6 6.4323 -2.1189 6.0292 16 6 7.6080 -1.2284 5.7196 17 1 8.5994 -1.6499 5.6435 18 6 7.4188 0.1253 5.5391 19 7 6.2595 0.6722 5.8337 20 14 8.8087 1.1825 4.8761 21 1 10.0007 0.3330 4.6256 22 1 8.3812 1.8230 3.6063 23 1 9.1495 2.2322 5.8697 24 6 6.3490 -2.7153 7.4359 25 6 6.7115 -3.6075 6.2461 26 6 2.0843 -0.8117 1.2000 27 1 -0.3634 -1.0253 0.0695 28 1 -0.3634 0.5729 0.8530 29 1 -0.3633 0.4524 -0.9228 30 1 2.1916 -0.1695 -2.0799 31 1 1.4472 -1.6631 -1.4210 32 1 5.5263 -0.6532 -0.8362 33 1 4.5617 -0.3345 -2.2978 34 1 4.3525 0.6848 -0.8537 35 1 6.2032 -1.8342 3.5214 36 1 4.3548 -2.4780 5.5872 37 1 4.7976 -0.7571 5.6921 38 1 6.1021 1.6095 5.6394 39 1 7.1445 -2.4634 8.1372 40 1 5.3579 -2.8373 7.8728 41 1 5.9586 -4.3162 5.9009 42 1 7.7454 -3.9429 6.1643 43 1 1.4537 -1.6784 1.3987 44 1 2.1523 -0.1801 2.0858 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326143889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:11 Heat of formation + Delta-G solvation = -64.378047 kcal Electronic energy + Delta-G solvation = -24646.910943 eV Core-core repulsion = 21178.225952 eV Total energy + Delta-G solvation = -3468.684992 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86483 -40.10862 -38.80440 -38.46731 -35.02420 -34.20580 -33.85895 -32.77847 -28.61064 -27.90127 -27.50783 -26.76892 -25.10272 -22.99967 -22.31595 -21.37143 -21.18091 -20.35879 -19.00705 -17.99392 -17.85400 -17.26776 -16.81223 -16.57699 -16.35871 -15.78834 -15.30844 -15.09510 -14.73626 -14.64039 -14.42078 -14.24865 -13.80090 -13.63165 -13.54412 -13.47237 -13.21002 -12.95724 -12.90971 -12.69137 -12.56412 -12.43132 -12.31868 -12.07668 -11.73613 -11.58500 -11.45074 -11.39286 -11.15889 -10.69532 -10.45161 -10.18545 -9.94154 -9.76821 -8.09559 -6.23451 0.42731 1.34012 1.36622 1.42368 1.50782 2.20772 2.38523 2.58454 2.98704 3.41613 3.50284 3.63858 3.69865 3.91886 4.09163 4.19640 4.29770 4.37895 4.47385 4.49599 4.64692 4.68955 4.73230 4.80696 4.83585 4.87412 4.91906 4.94755 5.04187 5.04984 5.11637 5.23365 5.24890 5.28062 5.37968 5.47177 5.48418 5.55135 5.58541 5.87789 6.10201 6.32383 6.39153 6.73547 6.82865 7.09491 7.40230 8.85899 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.004589 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.526574 B = 6099.560822 C = 6648.961632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.109 4.109 5 C 0.121 3.879 6 H 0.079 0.921 7 C -0.160 4.160 8 N -0.587 5.587 9 C 0.519 3.481 10 O -0.546 6.546 11 C 0.490 3.510 12 O -0.552 6.552 13 N -0.658 5.658 14 C 0.166 3.834 15 C 0.004 3.996 16 C -0.504 4.504 17 H 0.057 0.943 18 C 0.038 3.962 19 N -0.891 5.891 20 Si 0.939 3.061 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.282 1.282 24 C -0.189 4.189 25 C -0.187 4.187 26 C 0.098 3.902 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.409 0.591 36 H 0.038 0.962 37 H 0.089 0.911 38 H 0.259 0.741 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 -1.750 -14.536 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.120 4.120 3 H 0.100 0.900 4 C -0.147 4.147 5 C 0.020 3.980 6 H 0.097 0.903 7 C -0.218 4.218 8 N -0.320 5.320 9 C 0.302 3.698 10 O -0.424 6.424 11 C 0.271 3.729 12 O -0.433 6.433 13 N -0.306 5.306 14 C 0.043 3.957 15 C 0.003 3.997 16 C -0.541 4.541 17 H 0.075 0.925 18 C -0.164 4.164 19 N -0.528 5.528 20 Si 0.765 3.235 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.208 1.208 24 C -0.227 4.227 25 C -0.224 4.224 26 C -0.023 4.023 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.245 0.755 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.106 -1.604 -14.314 18.188 hybrid contribution 1.423 0.563 0.155 1.538 sum -9.683 -1.040 -14.159 17.185 Atomic orbital electron populations 1.21661 0.91754 1.02819 1.02983 1.22452 0.97669 0.98822 0.93091 0.90007 1.22824 0.92430 1.01178 0.98270 1.21998 0.98294 1.00400 0.77348 0.90328 1.22131 0.98158 0.98852 1.02687 1.48493 1.12415 1.63549 1.07574 1.19890 0.83768 0.78846 0.87328 1.90701 1.26500 1.47813 1.77420 1.20198 0.85256 0.79590 0.87877 1.90631 1.25928 1.49115 1.77615 1.45701 1.10569 1.66674 1.07683 1.20970 0.95583 1.01921 0.77179 1.19228 0.94015 0.91214 0.95243 1.20755 0.92885 0.91716 1.48731 0.92493 1.25480 0.97538 0.98528 0.94853 1.69991 1.24548 1.12817 1.45495 0.85796 0.80645 0.79146 0.77906 1.18999 1.21268 1.20759 1.22933 1.00797 1.06504 0.92497 1.22957 1.01036 0.94268 1.04162 1.22867 0.81182 0.99345 0.98950 0.91743 0.92544 0.90198 0.87273 0.88587 0.94158 0.88478 0.92803 0.75528 0.94371 0.89337 0.93098 0.90441 0.90112 0.89576 0.89878 0.90473 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.31 71.98 0.67 -1.04 16 2 C -0.10 -1.76 3.65 -9.33 -0.03 -1.79 16 3 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.11 -1.56 5.96 31.79 0.19 -1.37 16 5 C 0.12 2.75 3.49 45.34 0.16 2.91 16 6 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 7 C -0.16 -3.68 9.06 71.98 0.65 -3.03 16 8 N -0.59 -17.92 3.08 -789.16 -2.43 -20.35 16 9 C 0.52 20.15 7.69 87.27 0.67 20.82 16 10 O -0.55 -23.05 15.40 -3.26 -0.05 -23.10 16 11 C 0.49 21.26 7.84 87.27 0.68 21.94 16 12 O -0.55 -24.84 13.86 -3.27 -0.05 -24.89 16 13 N -0.66 -30.09 5.39 -464.41 -2.50 -32.59 16 14 C 0.17 7.94 4.80 86.38 0.41 8.35 16 15 C 0.00 0.18 1.95 -52.93 -0.10 0.07 16 16 C -0.50 -26.22 8.38 25.60 0.21 -26.00 16 17 H 0.06 2.97 7.84 -2.91 -0.02 2.95 16 18 C 0.04 1.98 5.24 84.65 0.44 2.42 16 19 N -0.89 -48.92 10.71 21.45 0.23 -48.69 16 20 Si 0.94 42.77 29.55 68.60 2.03 44.80 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 C -0.19 -8.09 9.96 30.62 0.30 -7.79 16 25 C -0.19 -7.61 9.93 30.62 0.30 -7.31 16 26 C 0.10 2.58 5.47 86.93 0.48 3.06 16 27 H 0.06 0.76 8.07 -2.39 -0.02 0.75 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.11 1.07 7.83 -2.39 -0.02 1.05 16 31 H 0.10 1.07 8.04 -2.39 -0.02 1.05 16 32 H 0.04 1.20 6.75 -2.38 -0.02 1.18 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.41 19.08 7.53 -92.71 -0.70 18.38 16 36 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 37 H 0.09 4.81 5.86 -2.39 -0.01 4.80 16 38 H 0.26 13.87 8.32 -92.70 -0.77 13.10 16 39 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.08 1.93 7.99 -2.38 -0.02 1.91 16 44 H 0.07 2.34 6.29 -2.39 -0.02 2.33 16 Total: -1.00 -62.00 356.08 2.57 -59.44 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.29 Total: 34.12 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.05 Total: 11.26 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -4.70 Total: -101.62 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -0.10 Total: -47.99 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -62.00 2.57 -59.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326143889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.943 kcal (2) G-P(sol) polarization free energy of solvation -62.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds