Wall clock time and date at job start Tue Mar 31 2020 06:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.64567 * 2 1 4 4 C 1.55159 * 110.72154 * 236.65656 * 2 1 3 5 5 C 1.55129 * 101.48839 * 205.96855 * 4 2 1 6 6 H 1.08997 * 110.49904 * 278.45550 * 5 4 2 7 7 C 1.53000 * 110.34304 * 156.06136 * 5 4 2 8 8 N 1.47430 * 104.71852 * 37.29979 * 5 4 2 9 9 C 1.34777 * 125.64437 * 155.81866 * 8 5 4 10 10 O 1.21351 * 120.00613 * 359.71153 * 9 8 5 11 11 C 1.49452 * 119.99562 * 179.71625 * 9 8 5 12 12 O 1.21347 * 120.00401 * 359.97438 * 11 9 8 13 13 N 1.34785 * 119.99800 * 179.97438 * 11 9 8 14 14 C 1.46494 * 119.99768 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.46901 * 184.78915 * 14 13 11 16 16 C 1.50695 * 115.54938 * 294.80496 * 15 14 13 17 17 H 1.07995 * 120.00171 * 99.43507 * 16 15 14 18 18 C 1.37888 * 119.99960 * 279.43770 * 16 15 14 19 19 N 1.31506 * 119.99900 * 5.41800 * 18 16 15 20 20 Si 1.86797 * 119.99563 * 185.41710 * 18 16 15 21 21 H 1.48509 * 109.47040 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47602 * 299.99726 * 20 18 16 23 23 H 1.48506 * 109.47358 * 60.00025 * 20 18 16 24 24 C 1.52994 * 117.52039 * 80.51145 * 15 14 13 25 25 C 1.52996 * 60.00211 * 107.48080 * 24 15 14 26 26 C 1.47018 * 108.70324 * 335.54717 * 8 5 4 27 27 H 1.09006 * 109.47350 * 298.31577 * 1 2 3 28 28 H 1.08999 * 109.47504 * 58.31710 * 1 2 3 29 29 H 1.09003 * 109.47238 * 178.31454 * 1 2 3 30 30 H 1.08995 * 111.00868 * 324.21262 * 4 2 1 31 31 H 1.08999 * 111.00235 * 88.02742 * 4 2 1 32 32 H 1.09006 * 109.47161 * 303.28860 * 7 5 4 33 33 H 1.08996 * 109.47023 * 63.28326 * 7 5 4 34 34 H 1.08998 * 109.47153 * 183.29103 * 7 5 4 35 35 H 0.96995 * 119.99961 * 359.97438 * 13 11 9 36 36 H 1.09000 * 109.47338 * 64.79008 * 14 13 11 37 37 H 1.09004 * 109.47271 * 304.78524 * 14 13 11 38 38 H 0.96999 * 120.00371 * 354.99843 * 19 18 16 39 39 H 1.09004 * 117.50008 * 214.97520 * 24 15 14 40 40 H 1.09006 * 117.49894 * 359.97438 * 24 15 14 41 41 H 1.09004 * 117.49591 * 252.50845 * 25 24 15 42 42 H 1.08994 * 117.49969 * 107.49642 * 25 24 15 43 43 H 1.09007 * 109.88173 * 120.70397 * 26 8 5 44 44 H 1.09000 * 109.88426 * 241.87087 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7977 -1.2123 5 6 3.4665 -1.2468 -0.6839 6 1 4.1946 -0.4429 -0.7921 7 6 3.9390 -2.4982 -1.4266 8 7 3.2444 -1.5495 0.7418 9 6 3.9922 -2.3810 1.4940 10 8 4.9388 -2.9589 1.0014 11 6 3.6556 -2.5914 2.9348 12 8 2.7093 -2.0133 3.4276 13 7 4.4031 -3.4234 3.6870 14 6 4.0735 -3.6292 5.0994 15 6 5.1379 -4.5170 5.7474 16 6 5.2120 -5.9289 5.2258 17 1 5.9643 -6.1972 4.4990 18 6 4.3193 -6.8781 5.6767 19 7 3.3378 -6.5290 6.4793 20 14 4.5043 -8.6600 5.1473 21 1 3.4270 -9.4743 5.7652 22 1 4.4068 -8.7497 3.6683 23 1 5.8264 -9.1727 5.5883 24 6 6.4477 -3.8523 6.1756 25 6 5.4339 -4.2959 7.2321 26 6 2.0760 -0.7891 1.2087 27 1 -0.3634 0.4875 0.9047 28 1 -0.3634 0.5397 -0.8745 29 1 -0.3634 -1.0272 -0.0302 30 1 1.4452 -1.6562 -1.4346 31 1 2.1844 -0.1557 -2.0869 32 1 3.1935 -3.2866 -1.3210 33 1 4.0736 -2.2648 -2.4827 34 1 4.8861 -2.8350 -1.0052 35 1 5.1593 -3.8858 3.2930 36 1 3.0998 -4.1127 5.1786 37 1 4.0437 -2.6664 5.6096 38 1 3.2837 -5.6196 6.8122 39 1 7.3632 -4.4363 6.0799 40 1 6.5516 -2.7823 5.9953 41 1 4.8707 -3.5177 7.7472 42 1 5.6824 -5.1716 7.8317 43 1 1.3128 -1.4730 1.5802 44 1 2.3740 -0.0989 1.9979 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326143891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:15 Heat of formation + Delta-G solvation = -54.582795 kcal Electronic energy + Delta-G solvation = -24335.919908 eV Core-core repulsion = 20867.659670 eV Total energy + Delta-G solvation = -3468.260238 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.66959 -38.86944 -37.57466 -36.99067 -33.70358 -32.98277 -31.97137 -31.83525 -27.37623 -27.05777 -25.79323 -24.96221 -23.78936 -21.49427 -21.02145 -20.66072 -19.80312 -19.08145 -17.46129 -17.12370 -16.49696 -16.07865 -15.35458 -14.98895 -14.54942 -14.28782 -14.10645 -13.76793 -13.71860 -13.33847 -13.17468 -13.03995 -12.80826 -12.67643 -12.37158 -12.28996 -11.97894 -11.82220 -11.76134 -11.24335 -10.99756 -10.96503 -10.88934 -10.81757 -10.61725 -10.52489 -10.13871 -9.73995 -9.10761 -8.81190 -8.71125 -8.55619 -8.44796 -8.31306 -6.41520 -4.18133 1.78311 2.53997 3.42041 3.42334 3.57580 3.61254 3.78521 4.25367 4.39149 4.46900 4.55790 4.82164 4.99321 5.06641 5.10680 5.13574 5.26811 5.29738 5.40217 5.43403 5.61491 5.66217 5.68396 5.75114 5.83408 5.89587 5.99287 6.05506 6.07968 6.13165 6.17877 6.27388 6.43921 6.48810 6.55007 6.80072 6.91320 7.10568 7.17474 7.29767 7.74053 8.13226 8.13810 8.33192 8.49894 8.79208 9.57671 10.97393 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019056 B = 0.003895 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.988185 B = 7187.685184 C = 7502.099614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.126 4.126 5 C 0.132 3.868 6 H 0.078 0.922 7 C -0.168 4.168 8 N -0.594 5.594 9 C 0.524 3.476 10 O -0.518 6.518 11 C 0.496 3.504 12 O -0.536 6.536 13 N -0.665 5.665 14 C 0.155 3.845 15 C 0.003 3.997 16 C -0.577 4.577 17 H 0.055 0.945 18 C 0.030 3.970 19 N -0.900 5.900 20 Si 1.066 2.934 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.287 1.287 24 C -0.192 4.192 25 C -0.171 4.171 26 C 0.113 3.887 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.275 0.725 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 12.731 -13.483 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 H 0.102 0.898 4 C -0.164 4.164 5 C 0.030 3.970 6 H 0.096 0.904 7 C -0.225 4.225 8 N -0.329 5.329 9 C 0.308 3.692 10 O -0.394 6.394 11 C 0.276 3.724 12 O -0.415 6.415 13 N -0.315 5.315 14 C 0.032 3.968 15 C 0.002 3.998 16 C -0.614 4.614 17 H 0.073 0.927 18 C -0.176 4.176 19 N -0.534 5.534 20 Si 0.894 3.106 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.214 1.214 24 C -0.229 4.229 25 C -0.210 4.210 26 C -0.010 4.010 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.251 0.749 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.596 11.247 -13.190 17.703 hybrid contribution 1.055 1.369 -0.173 1.737 sum -2.541 12.616 -13.363 18.552 Atomic orbital electron populations 1.21740 0.93643 1.02398 1.02092 1.22306 0.96640 0.99353 0.94519 0.89762 1.23016 0.95325 1.00429 0.97614 1.22054 0.97122 0.98064 0.79751 0.90395 1.22200 1.04165 0.96665 0.99511 1.48319 1.30084 1.43733 1.10790 1.20118 0.82481 0.79231 0.87396 1.90689 1.28238 1.47260 1.73183 1.19907 0.84047 0.81689 0.86778 1.90694 1.28552 1.48835 1.73411 1.45763 1.31402 1.42546 1.11774 1.21218 1.00055 0.97279 0.78205 1.19309 0.91695 0.95410 0.93338 1.21235 1.20099 0.91845 1.28240 0.92686 1.25781 0.92132 1.04829 0.94880 1.70746 1.28722 1.22813 1.31104 0.83582 0.76052 0.74895 0.76071 1.20769 1.21378 1.21368 1.22866 0.95072 0.98233 1.06726 1.22778 1.03349 1.01627 0.93215 1.22249 0.87579 0.95086 0.96083 0.92062 0.92249 0.92216 0.90202 0.89838 0.92463 0.91984 0.89273 0.74912 0.91028 0.93509 0.91396 0.89883 0.91314 0.91237 0.89485 0.90136 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.13 37.15 0.34 -0.72 16 2 C -0.11 -0.95 3.54 -88.79 -0.31 -1.26 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.13 -1.05 5.96 -24.46 -0.15 -1.20 16 5 C 0.13 1.48 3.78 -66.30 -0.25 1.22 16 6 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 7 C -0.17 -1.95 8.71 37.16 0.32 -1.63 16 8 N -0.59 -8.44 3.24 -163.41 -0.53 -8.97 16 9 C 0.52 9.19 7.70 -11.58 -0.09 9.10 16 10 O -0.52 -9.78 14.13 5.50 0.08 -9.71 16 11 C 0.50 9.72 7.86 -11.58 -0.09 9.63 16 12 O -0.54 -11.03 14.12 5.50 0.08 -10.95 16 13 N -0.66 -13.80 5.47 -60.73 -0.33 -14.13 16 14 C 0.16 3.48 5.36 -4.04 -0.02 3.46 16 15 C 0.00 0.08 0.91 -155.66 -0.14 -0.06 16 16 C -0.58 -15.22 8.57 -34.44 -0.30 -15.51 16 17 H 0.05 1.46 7.82 -52.49 -0.41 1.05 16 18 C 0.03 0.83 5.42 -17.82 -0.10 0.73 16 19 N -0.90 -25.84 13.61 55.43 0.75 -25.09 16 20 Si 1.07 24.52 29.91 -169.99 -5.08 19.43 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 24 C -0.19 -3.99 9.95 -26.74 -0.27 -4.25 16 25 C -0.17 -3.78 8.97 -26.73 -0.24 -4.02 16 26 C 0.11 1.40 5.08 -3.06 -0.02 1.38 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.08 0.69 7.96 -51.93 -0.41 0.27 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.27 5.89 -51.93 -0.31 0.97 16 35 H 0.41 8.61 7.80 -40.82 -0.32 8.30 16 36 H 0.07 1.80 7.64 -51.93 -0.40 1.40 16 37 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 38 H 0.27 7.80 6.08 -40.82 -0.25 7.55 16 39 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 43 H 0.08 1.11 7.26 -51.93 -0.38 0.74 16 44 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -29.76 356.66 -8.12 -37.88 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.16 Total: 9.28 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.30 Total: -3.13 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.11 Total: -48.19 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.16 Total: -20.65 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.76 -8.12 -37.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326143891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.701 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds