Wall clock time and date at job start Tue Mar 31 2020 06:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.64567 * 2 1 4 4 C 1.55159 * 110.72154 * 236.65656 * 2 1 3 5 5 C 1.55129 * 101.48839 * 205.96855 * 4 2 1 6 6 H 1.08997 * 110.49904 * 278.45550 * 5 4 2 7 7 C 1.53000 * 110.34304 * 156.06136 * 5 4 2 8 8 N 1.47430 * 104.71852 * 37.29979 * 5 4 2 9 9 C 1.34777 * 125.64437 * 155.81866 * 8 5 4 10 10 O 1.21351 * 120.00613 * 359.71153 * 9 8 5 11 11 C 1.49452 * 119.99562 * 179.71625 * 9 8 5 12 12 O 1.21347 * 120.00401 * 359.97438 * 11 9 8 13 13 N 1.34785 * 119.99800 * 179.97438 * 11 9 8 14 14 C 1.46494 * 119.99768 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.46901 * 184.78915 * 14 13 11 16 16 C 1.50695 * 115.54938 * 294.80496 * 15 14 13 17 17 H 1.07995 * 120.00171 * 99.43507 * 16 15 14 18 18 C 1.37888 * 119.99960 * 279.43770 * 16 15 14 19 19 N 1.31506 * 119.99900 * 5.41800 * 18 16 15 20 20 Si 1.86797 * 119.99563 * 185.41710 * 18 16 15 21 21 H 1.48509 * 109.47040 * 179.97438 * 20 18 16 22 22 H 1.48497 * 109.47602 * 299.99726 * 20 18 16 23 23 H 1.48506 * 109.47358 * 60.00025 * 20 18 16 24 24 C 1.52994 * 117.52039 * 80.51145 * 15 14 13 25 25 C 1.52996 * 60.00211 * 107.48080 * 24 15 14 26 26 C 1.47018 * 108.70324 * 335.54717 * 8 5 4 27 27 H 1.09006 * 109.47350 * 298.31577 * 1 2 3 28 28 H 1.08999 * 109.47504 * 58.31710 * 1 2 3 29 29 H 1.09003 * 109.47238 * 178.31454 * 1 2 3 30 30 H 1.08995 * 111.00868 * 324.21262 * 4 2 1 31 31 H 1.08999 * 111.00235 * 88.02742 * 4 2 1 32 32 H 1.09006 * 109.47161 * 303.28860 * 7 5 4 33 33 H 1.08996 * 109.47023 * 63.28326 * 7 5 4 34 34 H 1.08998 * 109.47153 * 183.29103 * 7 5 4 35 35 H 0.96995 * 119.99961 * 359.97438 * 13 11 9 36 36 H 1.09000 * 109.47338 * 64.79008 * 14 13 11 37 37 H 1.09004 * 109.47271 * 304.78524 * 14 13 11 38 38 H 0.96999 * 120.00371 * 354.99843 * 19 18 16 39 39 H 1.09004 * 117.50008 * 214.97520 * 24 15 14 40 40 H 1.09006 * 117.49894 * 359.97438 * 24 15 14 41 41 H 1.09004 * 117.49591 * 252.50845 * 25 24 15 42 42 H 1.08994 * 117.49969 * 107.49642 * 25 24 15 43 43 H 1.09007 * 109.88173 * 120.70397 * 26 8 5 44 44 H 1.09000 * 109.88426 * 241.87087 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7977 -1.2123 5 6 3.4665 -1.2468 -0.6839 6 1 4.1946 -0.4429 -0.7921 7 6 3.9390 -2.4982 -1.4266 8 7 3.2444 -1.5495 0.7418 9 6 3.9922 -2.3810 1.4940 10 8 4.9388 -2.9589 1.0014 11 6 3.6556 -2.5914 2.9348 12 8 2.7093 -2.0133 3.4276 13 7 4.4031 -3.4234 3.6870 14 6 4.0735 -3.6292 5.0994 15 6 5.1379 -4.5170 5.7474 16 6 5.2120 -5.9289 5.2258 17 1 5.9643 -6.1972 4.4990 18 6 4.3193 -6.8781 5.6767 19 7 3.3378 -6.5290 6.4793 20 14 4.5043 -8.6600 5.1473 21 1 3.4270 -9.4743 5.7652 22 1 4.4068 -8.7497 3.6683 23 1 5.8264 -9.1727 5.5883 24 6 6.4477 -3.8523 6.1756 25 6 5.4339 -4.2959 7.2321 26 6 2.0760 -0.7891 1.2087 27 1 -0.3634 0.4875 0.9047 28 1 -0.3634 0.5397 -0.8745 29 1 -0.3634 -1.0272 -0.0302 30 1 1.4452 -1.6562 -1.4346 31 1 2.1844 -0.1557 -2.0869 32 1 3.1935 -3.2866 -1.3210 33 1 4.0736 -2.2648 -2.4827 34 1 4.8861 -2.8350 -1.0052 35 1 5.1593 -3.8858 3.2930 36 1 3.0998 -4.1127 5.1786 37 1 4.0437 -2.6664 5.6096 38 1 3.2837 -5.6196 6.8122 39 1 7.3632 -4.4363 6.0799 40 1 6.5516 -2.7823 5.9953 41 1 4.8707 -3.5177 7.7472 42 1 5.6824 -5.1716 7.8317 43 1 1.3128 -1.4730 1.5802 44 1 2.3740 -0.0989 1.9979 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326143891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:14 Heat of formation + Delta-G solvation = -72.906060 kcal Electronic energy + Delta-G solvation = -24336.714464 eV Core-core repulsion = 20867.659670 eV Total energy + Delta-G solvation = -3469.054794 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97757 -40.26112 -38.87163 -38.72309 -35.28731 -34.02064 -33.94172 -32.86186 -28.85871 -28.01462 -27.06497 -26.74665 -25.12716 -23.16529 -22.28287 -21.65767 -21.42342 -20.54598 -18.97470 -18.31506 -18.20966 -17.44965 -16.79753 -16.53543 -15.79850 -15.68513 -15.58881 -15.32507 -14.83059 -14.77788 -14.62146 -14.34354 -14.17288 -13.76038 -13.68779 -13.59326 -13.20114 -12.88754 -12.79991 -12.67341 -12.65509 -12.42937 -12.25172 -11.97078 -11.74499 -11.69130 -11.54978 -11.48207 -10.65316 -10.58771 -10.52473 -10.28093 -10.16257 -9.85641 -8.55449 -6.31641 0.30604 1.22165 1.54352 1.59973 1.78997 2.08508 2.42662 2.56667 3.13153 3.22473 3.37637 3.46674 3.65523 3.83964 3.96860 4.13323 4.26263 4.29347 4.32846 4.40025 4.45865 4.55787 4.62422 4.69333 4.71099 4.80768 4.80996 4.82966 4.99404 5.02389 5.02534 5.10864 5.13094 5.21830 5.28983 5.31131 5.40404 5.42921 5.49664 6.02280 6.10834 6.21101 6.25722 6.65197 6.67827 6.92203 7.50211 8.84332 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019056 B = 0.003895 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.988185 B = 7187.685184 C = 7502.099614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.104 0.896 4 C -0.114 4.114 5 C 0.122 3.878 6 H 0.094 0.906 7 C -0.164 4.164 8 N -0.587 5.587 9 C 0.522 3.478 10 O -0.538 6.538 11 C 0.493 3.507 12 O -0.549 6.549 13 N -0.670 5.670 14 C 0.171 3.829 15 C -0.024 4.024 16 C -0.581 4.581 17 H 0.047 0.953 18 C -0.015 4.015 19 N -0.928 5.928 20 Si 1.106 2.894 21 H -0.287 1.287 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.166 4.166 25 C -0.171 4.171 26 C 0.105 3.895 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.037 0.963 37 H 0.057 0.943 38 H 0.266 0.734 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 14.351 -15.556 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.122 0.878 4 C -0.152 4.152 5 C 0.021 3.979 6 H 0.112 0.888 7 C -0.221 4.221 8 N -0.321 5.321 9 C 0.304 3.696 10 O -0.416 6.416 11 C 0.274 3.726 12 O -0.428 6.428 13 N -0.320 5.320 14 C 0.047 3.953 15 C -0.025 4.025 16 C -0.618 4.618 17 H 0.066 0.934 18 C -0.216 4.216 19 N -0.563 5.563 20 Si 0.929 3.071 21 H -0.213 1.213 22 H -0.204 1.204 23 H -0.196 1.196 24 C -0.203 4.203 25 C -0.209 4.209 26 C -0.017 4.017 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.137 0.863 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.250 0.750 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.482 12.907 -15.290 20.310 hybrid contribution 1.002 0.943 0.442 1.445 sum -2.480 13.849 -14.848 20.456 Atomic orbital electron populations 1.21738 0.92659 1.02176 1.03105 1.22311 0.97283 0.99619 0.92433 0.87752 1.23034 0.92957 1.00820 0.98390 1.22439 0.99527 0.98279 0.77604 0.88816 1.22137 1.02114 0.96521 1.01340 1.48496 1.29432 1.42092 1.12070 1.19681 0.83032 0.80302 0.86553 1.90689 1.29239 1.48508 1.73133 1.20399 0.83424 0.80882 0.87886 1.90678 1.28914 1.49149 1.74075 1.45720 1.31747 1.43157 1.11331 1.20868 0.97995 0.97049 0.79347 1.19311 0.93901 0.94801 0.94471 1.21489 1.19297 0.93449 1.27581 0.93441 1.26944 0.91829 1.08214 0.94629 1.70840 1.30118 1.22452 1.32928 0.83055 0.76537 0.71253 0.76218 1.21266 1.20392 1.19602 1.22878 0.93806 0.99396 1.04221 1.22731 1.04102 1.01551 0.92506 1.22409 0.86516 0.94699 0.98053 0.92248 0.89970 0.93180 0.90433 0.86340 0.93790 0.88819 0.92183 0.75003 0.94487 0.92501 0.92346 0.89675 0.88921 0.89568 0.91250 0.92077 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.13 71.98 0.66 -1.08 16 2 C -0.10 -1.41 3.54 -9.61 -0.03 -1.44 16 3 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.11 -1.50 5.96 32.06 0.19 -1.31 16 5 C 0.12 2.45 3.78 45.54 0.17 2.62 16 6 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 7 C -0.16 -3.56 8.71 71.98 0.63 -2.93 16 8 N -0.59 -16.28 3.24 -789.27 -2.56 -18.83 16 9 C 0.52 18.46 7.70 87.27 0.67 19.13 16 10 O -0.54 -20.58 14.13 -3.25 -0.05 -20.62 16 11 C 0.49 19.71 7.86 87.27 0.69 20.39 16 12 O -0.55 -23.06 14.12 -3.24 -0.05 -23.10 16 13 N -0.67 -28.34 5.47 -464.40 -2.54 -30.88 16 14 C 0.17 7.82 5.36 86.38 0.46 8.28 16 15 C -0.02 -1.13 0.91 -52.93 -0.05 -1.18 16 16 C -0.58 -31.01 8.57 25.60 0.22 -30.79 16 17 H 0.05 2.55 7.82 -2.91 -0.02 2.52 16 18 C -0.02 -0.84 5.42 84.66 0.46 -0.38 16 19 N -0.93 -54.53 13.61 21.45 0.29 -54.24 16 20 Si 1.11 49.77 29.91 68.60 2.05 51.83 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 C -0.17 -6.70 9.95 30.59 0.30 -6.39 16 25 C -0.17 -7.48 8.97 30.59 0.27 -7.21 16 26 C 0.11 2.53 5.08 86.73 0.44 2.98 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.72 8.13 -2.39 -0.02 0.71 16 30 H 0.08 1.10 7.96 -2.39 -0.02 1.08 16 31 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.69 5.89 -2.39 -0.01 1.67 16 35 H 0.41 17.55 7.80 -92.71 -0.72 16.83 16 36 H 0.04 1.93 7.64 -2.39 -0.02 1.92 16 37 H 0.06 2.45 8.09 -2.38 -0.02 2.43 16 38 H 0.27 15.60 6.08 -92.71 -0.56 15.04 16 39 H 0.08 3.40 8.14 -2.38 -0.02 3.38 16 40 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 41 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 42 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.06 1.71 7.26 -2.38 -0.02 1.69 16 44 H 0.07 1.75 7.69 -2.39 -0.02 1.73 16 Total: -1.00 -65.77 356.66 2.71 -63.06 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.47 Total: 32.11 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.08 Total: 0.68 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -4.81 Total: -103.96 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.09 Total: -43.72 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.05 Total: 51.83 kcal Total: -65.77 2.71 -63.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326143891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.843 kcal (2) G-P(sol) polarization free energy of solvation -65.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds