Wall clock time and date at job start Tue Mar 31 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 110.88466 * 2 1 4 4 C 1.55156 * 111.00736 * 123.92188 * 2 1 3 5 5 C 1.54334 * 103.01796 * 153.37997 * 4 2 1 6 6 H 1.09000 * 109.98953 * 218.66574 * 5 4 2 7 7 C 1.53007 * 109.77589 * 97.50043 * 5 4 2 8 8 N 1.47013 * 107.26943 * 338.14608 * 5 4 2 9 9 C 1.34781 * 125.65023 * 178.84790 * 8 5 4 10 10 O 1.21350 * 119.99803 * 359.71887 * 9 8 5 11 11 C 1.49450 * 120.00233 * 179.71205 * 9 8 5 12 12 O 1.21351 * 119.99839 * 354.35675 * 11 9 8 13 13 N 1.34774 * 119.99904 * 174.35472 * 11 9 8 14 14 C 1.46503 * 119.99938 * 184.55060 * 13 11 9 15 15 C 1.52996 * 109.47460 * 175.27118 * 14 13 11 16 16 C 1.50698 * 115.55220 * 282.46331 * 15 14 13 17 17 H 1.07995 * 120.00633 * 143.69653 * 16 15 14 18 18 C 1.37877 * 119.99738 * 323.69507 * 16 15 14 19 19 N 1.31518 * 119.99835 * 338.22527 * 18 16 15 20 20 Si 1.86794 * 120.00289 * 158.23216 * 18 16 15 21 21 H 1.48504 * 109.47493 * 59.99332 * 20 18 16 22 22 H 1.48501 * 109.47656 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46864 * 299.99602 * 20 18 16 24 24 C 1.52997 * 117.50005 * 136.74854 * 15 14 13 25 25 C 1.53001 * 60.00106 * 252.51348 * 24 15 14 26 26 C 1.47428 * 108.70441 * 358.58276 * 8 5 4 27 27 H 1.08999 * 109.47377 * 182.42808 * 1 2 3 28 28 H 1.09005 * 109.47416 * 302.42557 * 1 2 3 29 29 H 1.09004 * 109.47500 * 62.42812 * 1 2 3 30 30 H 1.08995 * 110.72104 * 271.93847 * 4 2 1 31 31 H 1.09005 * 110.71399 * 35.03723 * 4 2 1 32 32 H 1.09001 * 109.46861 * 300.80383 * 7 5 4 33 33 H 1.09002 * 109.46886 * 60.80739 * 7 5 4 34 34 H 1.09000 * 109.47048 * 180.80458 * 7 5 4 35 35 H 0.96996 * 120.00200 * 4.54646 * 13 11 9 36 36 H 1.09002 * 109.46836 * 295.27724 * 14 13 11 37 37 H 1.09000 * 109.47259 * 55.27243 * 14 13 11 38 38 H 0.97000 * 119.99800 * 185.02299 * 19 18 16 39 39 H 1.09000 * 117.49757 * 0.02562 * 24 15 14 40 40 H 1.08995 * 117.50096 * 145.02472 * 24 15 14 41 41 H 1.08998 * 117.49690 * 252.50964 * 25 24 15 42 42 H 1.09008 * 117.51663 * 107.48215 * 25 24 15 43 43 H 1.08996 * 110.37027 * 143.19724 * 26 8 5 44 44 H 1.08996 * 110.36380 * 265.41087 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0862 -0.8083 1.2019 5 6 3.4657 -1.2796 0.6953 6 1 3.6601 -2.2967 1.0356 7 6 4.5559 -0.3379 1.2110 8 7 3.4271 -1.2426 -0.7738 9 6 4.4476 -1.5608 -1.5947 10 8 5.5134 -1.9095 -1.1308 11 6 4.2668 -1.4842 -3.0763 12 8 3.1742 -1.2355 -3.5420 13 7 5.3171 -1.6913 -3.8950 14 6 5.1635 -1.5185 -5.3416 15 6 6.5213 -1.6970 -6.0237 16 6 7.4591 -0.5217 -5.9222 17 1 8.5210 -0.6860 -5.8132 18 6 6.9615 0.7633 -5.9686 19 7 5.7872 0.9944 -6.5137 20 14 7.9553 2.1759 -5.2573 21 1 9.2581 2.2700 -5.9639 22 1 7.2055 3.4458 -5.4315 23 1 8.1928 1.9352 -3.8112 24 6 6.5627 -2.5254 -7.3093 25 6 7.1391 -3.0967 -6.0122 26 6 2.0852 -0.8061 -1.2007 27 1 -0.3634 -1.0267 0.0435 28 1 -0.3634 0.5511 0.8675 29 1 -0.3634 0.4757 -0.9110 30 1 2.1922 -0.1707 2.0795 31 1 1.4451 -1.6619 1.4223 32 1 4.3567 0.6748 0.8607 33 1 4.5615 -0.3510 2.3010 34 1 5.5261 -0.6669 0.8388 35 1 6.1748 -1.9548 -3.5264 36 1 4.4642 -2.2621 -5.7241 37 1 4.7810 -0.5192 -5.5496 38 1 5.4691 1.9054 -6.6123 39 1 5.6224 -2.9430 -7.6694 40 1 7.2682 -2.2204 -8.0821 41 1 8.2238 -3.1674 -5.9318 42 1 6.5782 -3.8904 -5.5185 43 1 2.1558 -0.1711 -2.0838 44 1 1.4525 -1.6698 -1.4050 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326143892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:17 Heat of formation + Delta-G solvation = -46.601932 kcal Electronic energy + Delta-G solvation = -24550.524444 eV Core-core repulsion = 21082.610283 eV Total energy + Delta-G solvation = -3467.914162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55644 -38.75025 -37.47597 -36.73340 -33.47663 -32.84241 -32.27786 -31.72502 -27.23394 -26.82932 -25.83402 -25.48034 -23.74919 -21.43386 -21.07703 -20.31270 -19.44321 -18.98439 -17.57931 -16.55342 -16.26807 -15.95017 -15.34259 -14.97377 -14.67490 -14.33179 -13.87354 -13.77907 -13.63500 -13.50918 -13.18570 -12.80749 -12.70568 -12.58952 -12.34797 -12.01162 -11.78181 -11.76069 -11.60471 -11.21681 -10.95583 -10.86315 -10.81204 -10.69965 -10.63235 -10.52387 -10.32713 -9.58756 -9.33759 -8.95519 -8.82195 -8.68046 -8.37201 -8.00636 -6.18499 -4.14902 1.91238 2.65038 3.24417 3.31364 3.35935 3.70735 3.93169 4.30761 4.33576 4.46456 4.65479 4.84771 4.95727 5.07074 5.20579 5.21745 5.30306 5.46540 5.49919 5.50537 5.60452 5.67285 5.76310 5.89462 5.90795 5.94370 6.04295 6.15451 6.18605 6.25950 6.39242 6.46374 6.53242 6.62272 6.82671 6.98319 7.15119 7.28944 7.39442 7.48662 7.86532 7.88463 8.24829 8.31935 8.65442 8.79217 9.41846 10.84568 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.004488 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.484947 B = 6236.695146 C = 6595.487481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.124 4.124 5 C 0.133 3.867 6 H 0.077 0.923 7 C -0.165 4.165 8 N -0.593 5.593 9 C 0.522 3.478 10 O -0.523 6.523 11 C 0.497 3.503 12 O -0.534 6.534 13 N -0.668 5.668 14 C 0.142 3.858 15 C 0.038 3.962 16 C -0.501 4.501 17 H 0.064 0.936 18 C 0.077 3.923 19 N -0.866 5.866 20 Si 0.886 3.114 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.190 4.190 25 C -0.210 4.210 26 C 0.105 3.895 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.408 0.592 36 H 0.038 0.962 37 H 0.123 0.877 38 H 0.266 0.734 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.067 -2.480 13.880 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 H 0.103 0.897 4 C -0.162 4.162 5 C 0.030 3.970 6 H 0.095 0.905 7 C -0.223 4.223 8 N -0.328 5.328 9 C 0.306 3.694 10 O -0.398 6.398 11 C 0.276 3.724 12 O -0.413 6.413 13 N -0.317 5.317 14 C 0.021 3.979 15 C 0.037 3.963 16 C -0.537 4.537 17 H 0.083 0.917 18 C -0.127 4.127 19 N -0.501 5.501 20 Si 0.713 3.287 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.228 4.228 25 C -0.247 4.247 26 C -0.017 4.017 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.244 0.756 36 H 0.057 0.943 37 H 0.140 0.860 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.337 -2.346 13.709 16.752 hybrid contribution 0.965 0.583 0.412 1.201 sum -8.372 -1.763 14.121 16.511 Atomic orbital electron populations 1.21675 0.93645 1.02168 1.02194 1.22438 0.96307 0.99595 0.94572 0.89734 1.22808 0.94867 1.00289 0.98232 1.21630 0.95953 0.99937 0.79501 0.90530 1.22167 0.99971 0.99447 1.00705 1.48325 1.12773 1.65501 1.06207 1.20261 0.83091 0.78071 0.87974 1.90715 1.25441 1.46230 1.77455 1.19779 0.85663 0.80160 0.86755 1.90667 1.24841 1.48782 1.76967 1.45921 1.12583 1.64519 1.08681 1.21443 0.96744 1.04427 0.75307 1.19114 0.93064 0.89089 0.95069 1.20418 0.92785 0.88852 1.51688 0.91740 1.24947 0.94971 0.98820 0.94011 1.69856 1.19777 1.21045 1.39457 0.86747 0.80289 0.81207 0.80485 1.20053 1.21172 1.19884 1.22938 1.00740 1.06968 0.92190 1.22906 0.99328 0.99038 1.03460 1.22670 0.81958 0.99082 0.98032 0.92337 0.92299 0.91979 0.89903 0.90483 0.92388 0.91738 0.90826 0.75643 0.94326 0.85965 0.92368 0.91503 0.90005 0.90328 0.91265 0.88157 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.29 37.16 0.35 -0.73 16 2 C -0.11 -1.06 3.64 -88.47 -0.32 -1.39 16 3 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 4 C -0.12 -1.08 5.95 -24.89 -0.15 -1.23 16 5 C 0.13 1.58 3.51 -66.95 -0.23 1.34 16 6 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 7 C -0.16 -1.96 9.05 37.16 0.34 -1.62 16 8 N -0.59 -8.91 3.08 -163.51 -0.50 -9.42 16 9 C 0.52 9.63 7.70 -11.58 -0.09 9.54 16 10 O -0.52 -10.38 15.38 5.50 0.08 -10.29 16 11 C 0.50 10.19 7.83 -11.59 -0.09 10.10 16 12 O -0.53 -11.51 13.87 5.50 0.08 -11.43 16 13 N -0.67 -14.32 5.54 -60.73 -0.34 -14.66 16 14 C 0.14 3.34 5.30 -4.04 -0.02 3.32 16 15 C 0.04 0.89 1.71 -155.66 -0.27 0.63 16 16 C -0.50 -13.14 8.97 -34.44 -0.31 -13.45 16 17 H 0.06 1.69 7.91 -52.49 -0.41 1.28 16 18 C 0.08 2.04 5.05 -17.82 -0.09 1.95 16 19 N -0.87 -23.63 11.15 55.43 0.62 -23.01 16 20 Si 0.89 20.71 29.59 -169.99 -5.03 15.68 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.19 -4.19 9.88 -26.73 -0.26 -4.45 16 25 C -0.21 -4.37 9.94 -26.73 -0.27 -4.64 16 26 C 0.10 1.38 5.44 -2.53 -0.01 1.37 16 27 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.59 7.83 -51.93 -0.41 0.19 16 31 H 0.08 0.58 8.01 -51.93 -0.42 0.17 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.07 6.74 -51.93 -0.35 0.72 16 35 H 0.41 8.55 7.96 -40.82 -0.32 8.22 16 36 H 0.04 0.88 7.98 -51.93 -0.41 0.47 16 37 H 0.12 3.26 5.49 -51.93 -0.29 2.97 16 38 H 0.27 6.99 8.32 -40.82 -0.34 6.65 16 39 H 0.07 1.39 8.10 -51.93 -0.42 0.96 16 40 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 43 H 0.10 1.55 6.32 -51.93 -0.33 1.23 16 44 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -28.73 357.30 -8.28 -37.01 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.14 Total: 9.98 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.43 Total: 0.76 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.22 Total: -47.09 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.16 Total: -21.72 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.73 -8.28 -37.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326143892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.587 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds